mRNA_H-elongata_contig15451.3585.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15451.3585.1
Unique NamemRNA_H-elongata_contig15451.3585.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 654 bits (1688), Expect = 6.760e-219
Identity = 344/519 (66.28%), Postives = 413/519 (79.58%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRCAVVAALNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNEPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVAGLAGLDLAPGMLEEVVVDMLALPA 1569
            R F+SP+YLK SEG+RLLA  FGLH SL+ +IHAV++AQ+PGA+  VLAAYGE+YFRVWRG +G YLEKVE+ CLQDLMHACIHAST KMH ++L VL+G+HSQKK KG+DA LLRLYGPV+WR+LRVANP+VRAQACQVLVDAFPLQDP+AGAA+Y+A L+QQF AL  LLED HP+VRAVA KGAC VL V+WEM+P+ TTRALL RVVGRLASDG+S  VRL AVEGL  LL CPASH+VLK+MLP V   L+HD NK+VR   V+LL +VKG++SIKYY +  VDHILARL+ED   CPASAS L++LILNSYFPTG GVTGS QVSRCLTLLSQDEGAA AF+SRLHQ+AG+PS+AK++AMLVRC +V A                    +  ++G R          + G +       TL ASD+K+MSG+L LIA+IWESILP L++++NEPSL+LIQQTVT E+L+ L+ RF   + CR+AFMRVAGLAG DLAPGMLE+VVV+MLALPA
Sbjct:  288 RTFMSPVYLKCSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGTEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILIVLEGLHSQKKVKGVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTDLLEDAHPQVRAVAGKGACRVLSVFWEMVPLDTTRALLTRVVGRLASDGSSPAVRLAAVEGLSVLLECPASHAVLKSMLPGV-QNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDDAKCPASASGLSKLILNSYFPTGSGVTGSFQVSRCLTLLSQDEGAAVAFFSRLHQNAGVPSSAKMIAMLVRCILVVARAXXXXXXXXXXXXXXXXXXKVDRKGKRXXXXX--XGGQRGAKGGNKTGLTLKASDSKTMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRFSGQDECRAAFMRVAGLAGGDLAPGMLEDVVVEMLALPA 803          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 621 bits (1602), Expect = 8.050e-207
Identity = 336/530 (63.40%), Postives = 406/530 (76.60%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSK------LVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRCAVVAA-----LNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNEPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVAGLAGLDLAPGMLEEVVVDMLALPA 1569
            R F+SP+YLKSSEG+RLLA  FGLH SL+ +IHAV++AQ+PGA+  VLAAYGE+YFRVWRGA+G YLEKVE+ CLQDLMHACIHAST KMH ++L VL+G+HSQKK KG+DA LLRLYGPV+WR+LRVANP+VRAQ   +            GAAAY+A L+QQF AL  LLED HP+VRAVA KGAC VL V+WEM+P+ TTRALL RVVGRLASDG+S  VRL AVEGL  LL CPASH+VLK+MLP   S+      L+HD NK+VR   V+LL +VKG++SIKYY +  VDHILARL+EDH  CPASAS L++LILNSYFPTG GVTGS QVSRCLTLLSQDEGAA AF+SRLHQ+AG+PS+AK++AMLVRC +VAA      +            V    +R+  E G G           G +     + TL ASD+K+MSG+L LIA+IWESILP L++++NEPSL+LIQQTVT E+L+ L+ RF   + CR+AFMR+AGLAG DLAPGMLE+VVV+MLALPA
Sbjct:  161 RTFMSPVYLKSSEGKRLLASFFGLHPSLVSEIHAVMKAQMPGAKKAVLAAYGEVYFRVWRGAEGQYLEKVEMLCLQDLMHACIHASTPKMHQNILVVLEGLHSQKKAKGVDADLLRLYGPVMWRSLRVANPSVRAQGYLL---------SGVGAAAYDATLQQQFVALTDLLEDAHPQVRAVAGKGACRVLSVFWEMVPLDTTRALLTRVVGRLASDGSSPAVRLAAVEGLSVLLECPASHAVLKSMLPVSVSEEGGVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDHAKCPASASGLSKLILNSYFPTGSGVTGSFQVSRCLTLLSQDEGAAVAFFSRLHQNAGVPSSAKMIAMLVRCILVAARAPAVADNXXXXXXXXXXXVDRRGKRKGVEEGGGHC---------GAKGGNKARLTLKASDSKTMSGILNLIASIWESILPALEKTINEPSLDLIQQTVTGEALSILYRRFCGQDECRAAFMRLAGLAGGDLAPGMLEDVVVEMLALPA 672          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 5.490e-121
Identity = 224/522 (42.91%), Postives = 314/522 (60.15%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPAS---ASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRC---AVVAALNRDEGAGRTLPQNVVAESEREKK------------------------------------EGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNEPSLELIQQTVTVESLAALHGR 1452
            + F+ P YLKS++GRRLL +LFGLH SL++DIH  V++Q+P A+  ++ AYG++YFR WR A+GPYLE +E  C+QDLMHA +H ++  ++A+L  +L   H+ K+ + +DA LLRLY P+LWR+LRVA+PTVRAQA  +LVDAFPLQDP  G     A+L++Q D L +LL D  P VR  A  G C VL ++WE IP+  T+A + R+VG LA D +SA+VRL  VEGL +LL  P +H VLK+ LP + + L+ DK  RVR   V LL+ VK +R IK+Y +VPV+H+LAR A D    P S   ++++T L+LNSYFP G GVTGS QVSRCLT LSQ + AA AFY RL +H GL    ++ AML++C   A+    N  EG G    Q   A                                           + G G+ KR                  ++  D  ++SG+L+++A +W S+ P L   VNE + +L++ T+  E ++AL+ +
Sbjct:  240 QCFLKPTYLKSADGRRLLTFLFGLHPSLVVDIHETVKSQLPYAKKKLVQAYGDVYFRAWRAAEGPYLEAIETGCVQDLMHAAVHCASPSLYATLRLLLQSFHANKRLREVDAMLLRLYDPILWRSLRVASPTVRAQATSLLVDAFPLQDPDMGTIEAAALLQRQLDVLQSLLLDPAPHVRVTAVAGVCRVLSLFWEAIPLQVTKAYVTRLVGSLAFDASSALVRLSVVEGLQQLLEQPLAHPVLKSALP-LTAPLLQDKTPRVRAAFVGLLQKVKSVRDIKFYEVVPVEHLLARFATDAAK-PGSRTLSARMTGLLLNSYFPQGVGVTGSKQVSRCLTFLSQSKPAALAFYGRLREHVGLGPVTRLTAMLLKCVLGAIADQQNDKEGRGEGGAQAGKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGHGQKKR------------------MSEVDEATLSGMLEVVAVLWASVGPELALPVNEAAADLLRHTLASEDMSALYDK 741          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 315 bits (808), Expect = 4.800e-99
Identity = 173/367 (47.14%), Postives = 236/367 (64.31%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAML 1113
            R  I PLY+  ++GRR LA+LF LH + + D+H  ++ Q+P  R  V AAYGE+YF+ WR ++G    K+E  C+QDLMH  +HAS   M A+   VL    ++K+++G+D  L RLY P+LWR+L  ANPTVR  A   LVDAFPLQ+P A     +A L++QFDAL ALL D  P VR VA  G C VL V+WE+IP  T  ALLAR+VG LA D  S+ VR    EGL  +L C  SH +LK +LP++ + L+HD+++RVR   V LL+ V  +RSI+++ +V +DH++ARLA D    PA AS +TEL+L SYFP G G  GS Q+ R +  L++   AA  F+   H H  + + AK+  ML
Sbjct:   91 RCVIHPLYVSRADGRRFLAFLFSLHPTFVDDLHDTIKNQMPSTRR-VHAAYGEVYFKAWRNSEGELTLKIERGCVQDLMHRGVHASLPAMFAATRQVLAAFINEKRSRGVDEMLDRLYEPILWRSLAAANPTVRRNAATALVDAFPLQNPEAARPVVDASLQKQFDALGALLSDPVPNVRVVAVHGVCKVLGVFWELIPAATAHALLARLVGELAHDVRSSAVRAAVFEGLDYVLDCGLSHPMLKPLLPAL-APLLHDRSERVRAAFVALLQRVSKVRSIRFFDVVHIDHVMARLAMD-ADVPAVASPMTELLLPSYFPQGVG--GSEQLKRAVKCLTRYPAAALVFFRHAHDHTDVAAVAKLGLML 452          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: UPI000F554239 (condensin-2 complex subunit G2-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F554239)

HSP 1 Score: 308 bits (789), Expect = 7.110e-90
Identity = 191/525 (36.38%), Postives = 287/525 (54.67%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHAS---TSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRCAVVAALNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLN---ASDAKSMSGVLKLIATIWESILPGLKESVNEPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVAGLAGLDLAPGMLEEVVVDMLALPA 1569
            +  I P YLK  EGRR L+Y FGL+  L  + H  ++ QIP   M VL+ YGE+YFR WR A G YL+ +E +C+QDLM A +HA    T  M + L  VL+ +H QKK +G+D ALLRLY P++WRA +VANP VRA A  +L D FPLQ+P AG    + +L++QFD L  LL D HP VRA A  G C +  V+WE+IP    +  L ++V  LA D +S+ VR+   +GL  LL    SH +LK +L ++   LVHD+ +RVRV  +++L LVKG+++IK++++VP++ +LA+L  +     A   +L +L++NS+ PT   V   +Q +RC  L   +  AA  FY  +H H  + +  K +A L  C V  A N  +    +L    V+++E                        D+ N   L      D  +++G+ + IA  W  I   L +S N+ +   + +  T  +L  L G  F+    ++A + +AG       P    + +  + +LPA
Sbjct:  209 QCMIHPTYLKLEEGRRFLSYSFGLNPGLAKEFHKTIKNQIPYCTMNVLSLYGEVYFRAWRVASGAYLKVLEENCIQDLMFAAVHAQRTGTKSMASRLRKVLEYIHQQKKQRGVDEALLRLYQPIIWRAFKVANPMVRANAAALLTDIFPLQNPDAGNEEIDELLQKQFDILKDLLGDAHPTVRATAIHGVCRITGVFWELIPAHIIKMFLTKLVTELAFDTSSSAVRVAVFQGLKFLLDNRLSHPLLKPLLSNL-QDLVHDQTERVRVVFLDVLLLVKGLKAIKFWNIVPLEQLLAQLEVEQSA--AVIRRLVKLLVNSFHPTNKSV--DVQATRCSALWQSNPLAARKFYQYVHLHTTISATGKFIAFLGNCLVKCAKNEHD---ESLSLEPVSQAE------------------------DKENSECLEKLGTYDVNTLAGLAETIAICWGGIKDKLDKSANDATRSKLVEKFT-NALPILFG-VFKQTRIQAACLVIAGFLPSSSLPAFSAKCLSSLSSLPA 699          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: L8GEA4_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA)

HSP 1 Score: 309 bits (792), Expect = 7.730e-90
Identity = 185/498 (37.15%), Postives = 275/498 (55.22%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRC---AVVAALNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNEPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVA 1497
            R FI P++L++++G++ L YLFGLH   I  IH  ++ Q+P     +L AYGE+YF+ W+ A GPYL K+E  CLQDL+   +H     + + L  VL  +H QKK KG+D  LLRLY P++WR+L+VANP VR  A  +L DAFPLQDP +     + +L++QF+   ALL D  P VR VA +  C +L V+WE+IP  T R LL +++   A D +S+ VR    EGL  LL    S  VLK  LP + + L+HD  +RVRV  ++LL  +K +R+I++Y +VP++H+L RL  D LT      KLT+L+LNSYFP      GS+Q  RC+ L+  +  A   FY+ L Q        K + +L +     +  A +   GA                K             +EE           ++A D+  M  +L+++ T+W+SILP LK+  N+ + + ++ T   E+L  L   F   +  + A +R+A
Sbjct:  275 RCFIHPMFLRAADGKKFLVYLFGLHPPYIDAIHDTIKGQLPACPKSLLEAYGEVYFKAWKVAQGPYLLKLEYTCLQDLISCAVHVQNEAVVSGLRKVLRHIHEQKKQKGVDEMLLRLYEPIIWRSLKVANPMVRRNATVLLADAFPLQDPDSAQRETDELLQKQFNQFEALLTDDVPVVRCVAVQAVCRILGVFWELIPAATIRTLLTKLINDSARDKSSSAVRQAVFEGLRYLLDNHLSQPVLKTHLPQL-APLIHDTAERVRVAFIDLLCEIKTIRAIRFYDIVPIEHLLTRLELDSLTVQ---KKLTKLLLNSYFPLDR--KGSVQAKRCIILVQGNRKAGLHFYASLRQCVAAGPLCKFIGVLYKLLCKCIERAASSGAGAXXXXXXXXXXXXXXXXK-------------SEE-----------ISAKDSDLMESILEVMYTLWDSILPDLKKEENKAAKKYLKDTFNDEALENLTTNFTTPKA-QLAILRIA 741          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: A0A835YRM8_9STRA (Condensin II non structural maintenance of chromosomes subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM8_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.100e-89
Identity = 239/657 (36.38%), Postives = 309/657 (47.03%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGP------------YLEKVEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLR------------QQFDALAALLED--------------------------------GHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAM-----------------------VRLGAVEGLIELLGCPASHS------------------------------VLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAML---VRCAVVAALNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRR---------------------EDRTNK----RTLNASDAKSMSGVLKLIATIWESILPGLKESVN---EPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVAGLAGLDLAPGMLEEVVVDMLAL 1563
            RAF++P +L+   GRR LA +FGLH +    IHAVV AQ+P AR  VLAAYGE+YFR WRGADG             Y  ++E  C+Q LM                 VLD  H+Q++ KG+DAALLRLY P+LWRALRVANP VRAQA  +L  AFPLQDP   AAA EA L+            +QFDAL+A+++D                                G PRVRA AA+  C V+  +WE IPM TTRALL RV+                                  VR+ A+EGL  LL C  SHS                               LKA+LP++ + L HD N R R   V LL  V+ +R+I++YH+ PVD +LA+L  D    P  A  L EL+ NSY+P G GVTG  QV R LT++ Q+ GAA AF   L  H G  +  K+  ML   V+ A  AAL++ E     L     A ++R   +G  G            +R                      DR N      T+N   A S + +L L   +WESI  G   S N   +P  EL+  TV   +L  L  R   +   R+A +R+AGL G    P +LE +V  +L+L
Sbjct:  241 RAFLAPAFLRGDAGRRFLASVFGLHPAFAARIHAVVSAQLPRARRAVLAAYGEVYFRAWRGADGXXXXXXXXXXXXXYAAEIEGACMQPLMXXXXXXXXXXXXXXARGVLDAFHAQRRQKGVDAALLRLYDPILWRALRVANPVVRAQAAALLARAFPLQDPDGPAAAAEATLQHXXXXXXXXXXXRQFDALSAIMQDFDLCVPINXXXXXXXXXXXXXXXXXXXXXXXXGDPRVRAAAARAVCAVVGDWWEAIPMATTRALLTRVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRIAALEGLTALLDCALSHSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKALLPALRNTL-HDANPRARRAFVALLLRVRSVRAIRFYHVAPVDALLAQLEVDDGDAPPVARALAELLANSYYPQGAGVTGEEQVGRMLTMVQQNYGAARAFCRHLRAHVGAGAVTKMAVMLFKAVQVAAAAALSKGESKAAALRNGESALNKRGGAKGVGGAXXXXXXXXXXRKRTAXXXXXXXXXXXXXXXXXXXSDRENAVAAAPTVNIDTALS-ARLLTLCVDLWESI--GSDLSTNPALQPCQELLSATVDGRALTLLLTRLEGNADARAALLRMAGLMGAAALPELLEAMVGQLLSL 893          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: A0A6P8HAI6_ACTTE (condensin-2 complex subunit G2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HAI6_ACTTE)

HSP 1 Score: 306 bits (783), Expect = 5.030e-89
Identity = 176/462 (38.10%), Postives = 261/462 (56.49%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHAS---TSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRCAVVAALNRDEGAGRTLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNE 1389
            +  I P +L++ EG R L++LFG+H   I ++H  ++ QIP   M VL+ YGEIYFR WR A GP+LE +E  C Q+LM+A +HA    T  M + L  VL  +H QKK +G+D AL+RLY P++WRA +VANP VRA A  +L+DAFPLQDP A     + +L++QFD L  LLED  P VRA    G C +  V+WE+IP+ T + LL +++  +A D +S+ VR+   +GL  LL    SH  LK +L S+   L+HD +++VR   V+LL LVKGM++IK++ +VP++H+LARL  +  T      KL +L++NS+ P        +Q++RC  L   +  AA  FY   H H  + +  K + +L +C    A N       ++      +S                 D +E    D +    L   D  +++G+L+ IA  W  I   L++  NE
Sbjct:  204 QCMIHPTFLRAEEGHRFLSFLFGIHPGFIKELHKTIKNQIPVCSMDVLSTYGEIYFRAWRVASGPFLEVIENDCFQNLMYAAVHAQRTGTQSMASRLRKVLGYLHQQKKQQGVDEALVRLYQPIIWRAFKVANPMVRANAAALLIDAFPLQDPDANNEEVDNLLQKQFDILQNLLEDPSPVVRATGVHGVCRIAGVFWELIPVTTLKTLLNKLICEVAFDASSSSVRVAVFQGLKFLLENHLSHLFLKTLLVSL-RDLIHDNSEKVRAAFVDLLLLVKGMKAIKFWSIVPLEHLLARLELE--TSAPVMRKLVKLLMNSFHPLNKET--DIQITRCTALWEANPVAARRFYQYAHLHTSVHATGKFILLLGQCLSHWAKNVGSADNTSVEDITRTDS----------------TDNKENEGIDESADAVLTLPDVNTIAGILETIAISWAGIKDQLEKKANE 644          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: A0A7S2EFC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EFC5_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.800e-86
Identity = 160/405 (39.51%), Postives = 236/405 (58.27%), Query Frame = 1
Query:   25 SPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGAD------------------GPYLEK-VEIHCLQDLMHACIHASTSKMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDP---AAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASK-----------------LTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRC 1122
            SPL+L+ ++GR  +++LF LH S +  +H  +R QIP AR  +L AYG IY R W+ A                   G  ++K +E + LQDLM+A +H ST  M  ++  VL  +H+ KK+  +D+ L R+Y P+LWRAL  ANP VR  A  +LVD FPL+DP   + G A  +  +++   AL +LL D  P VRA A+  +  +L  +W+ IP    R +L  ++   ASD  S+ VR  AV  +  LL  P SH+VL+++LPS+   L+HD  +RVR+++V+LL  VK ++ IK+YH+VPVDH+LARLA +      + +K                 LT+L+LNSYFP G  VTG+ Q+ R LT L+    AAT FYS + +   + +  K+ AML++C
Sbjct:   45 SPLFLRHNDGREFISHLFTLHPSFVPHLHQAIRVQIPNARHRILQAYGNIYLRAWKKASASATPFRSGNIVEHERGLGEAIQKSIEENALQDLMYAALHVSTKSMSKAIRLVLQPIHAAKKSPQIDSLLYRMYTPILWRALSAANPLVRLNATSILVDTFPLRDPNDASRGDATTQEGVQKTHKALVSLLTDDDPAVRASASDASARILATFWDAIPTNNIRTILNHIIAEHASDKTSSSVRASAVTSIALLLDAPQSHAVLRSLLPSL-GNLIHDNIERVRLSVVKLLLRVKKIKGIKFYHVVPVDHLLARLAAERSNITTTRNKKVVTQDPAFNASSVAIALTDLLLNSYFPRGEHVTGADQIRRTLTFLTNHPDAATVFYSNISRQLSVNAVCKLAAMLLKC 448          
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Match: UPI000A2A85E3 (condensin-2 complex subunit G2-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A85E3)

HSP 1 Score: 298 bits (763), Expect = 2.920e-86
Identity = 178/471 (37.79%), Postives = 266/471 (56.48%), Query Frame = 1
Query:   13 RAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMPVLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTS---KMHASLLAVLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFPLQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWEMIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKAMLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLAEDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATAFYSRLHQHAGLPSAAKVLAMLVRCAVVAALNRDEGAGR---------TLPQNVVAESEREKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIWESILPGLKESVNE 1389
            ++ I P +L++ EGRR L++LFG+H     ++H  ++ QIP   +  L+ YGEIYFR WR A GPYLE +E  C QDLM+A +HA  +    M + L  VL  VH QKK +G+D  L+RLY P+LWRA +VANP VRA A  +L+DAFPLQ+P A     + +L++QFD L  L ED  P VRA    G C +  V+WE+IP+   +ALL +++  +A D +S+ VR+   +GL  LL    SH +LK +L ++   L+HD +++VR   ++LL LVKG+++IK++ +VP++H+LA L  +  T      KL +L++NS+ P        +Q++RC  L   +  AA  FY   H HA + +  K + +L RC V  A N                TL  +V+  SE ++ E             EE        +  L   D  ++SG+L+ IA  W  I   L+++ NE
Sbjct:  203 QSMIHPTFLRAEEGRRFLSFLFGMHPEFSKELHKTIKNQIPNCSIGTLSLYGEIYFRAWRVASGPYLEVLEKDCFQDLMYAAVHAQRTGVQPMSSRLRKVLSYVHQQKKQQGVDEMLIRLYQPILWRAFKVANPMVRANASALLIDAFPLQNPEASNEQADELLQKQFDILQGLFEDPSPIVRATGVHGVCRITGVFWELIPVHXIKALLNKLISEVAFDSSSSTVRVAVFQGLKFLLENHLSHPLLKTLLGNL-RDLIHDVSEKVRSAFLDLLLLVKGIKAIKFWTIVPLEHLLACLEVE--TSATVLRKLVKLLMNSFHPLNK--EADVQITRCAALWEANPVAARKFYQYAHLHAAVXATGKFILLLCRCLVQWAKNIAPDTSFESFLLDDTCTLNPSVLDPSENKENE-----------TIEE------VGEAVLTLPDIDTISGILETIAISWSGIKDQLEKTSNE 651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15451.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF93_ECTSI6.760e-21966.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG90_9PHAE8.050e-20763.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TM42_9STRA5.490e-12142.91Condensin-2 complex subunit g2 n=2 Tax=Monodopsida... [more]
A0A7S1CM40_9STRA4.800e-9947.14Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI000F5542397.110e-9036.38condensin-2 complex subunit G2-like n=1 Tax=Pocill... [more]
L8GEA4_ACACA7.730e-9037.15HEAT repeat domain containing protein n=1 Tax=Acan... [more]
A0A835YRM8_9STRA1.100e-8936.38Condensin II non structural maintenance of chromos... [more]
A0A6P8HAI6_ACTTE5.030e-8938.10condensin-2 complex subunit G2-like n=1 Tax=Actini... [more]
A0A7S2EFC5_9STRA1.800e-8639.51Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
UPI000A2A85E32.920e-8637.79condensin-2 complex subunit G2-like n=1 Tax=Exaipt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15451contigH-elongata_contig15451:852..7563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score657.5
Seed ortholog evalue5.1e-186
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
KEGG koko:K11492
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons11
Model size1569
Cds size1569
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929912.3487084-CDS-H-elongata_contig15451:851..9971622929912.3487084-CDS-H-elongata_contig15451:851..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 852..997 -
1691679205.691266-CDS-H-elongata_contig15451:851..9971691679205.691266-CDS-H-elongata_contig15451:851..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 852..997 -
1622929912.3787136-CDS-H-elongata_contig15451:1623..17351622929912.3787136-CDS-H-elongata_contig15451:1623..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 1624..1735 -
1691679205.7065032-CDS-H-elongata_contig15451:1623..17351691679205.7065032-CDS-H-elongata_contig15451:1623..1735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 1624..1735 -
1622929912.4018412-CDS-H-elongata_contig15451:2141..24791622929912.4018412-CDS-H-elongata_contig15451:2141..2479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 2142..2479 -
1691679205.7178552-CDS-H-elongata_contig15451:2141..24791691679205.7178552-CDS-H-elongata_contig15451:2141..2479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 2142..2479 -
1622929912.4214065-CDS-H-elongata_contig15451:3011..30701622929912.4214065-CDS-H-elongata_contig15451:3011..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 3012..3070 -
1691679205.7267652-CDS-H-elongata_contig15451:3011..30701691679205.7267652-CDS-H-elongata_contig15451:3011..3070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 3012..3070 -
1622929912.4381468-CDS-H-elongata_contig15451:3492..36471622929912.4381468-CDS-H-elongata_contig15451:3492..3647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 3493..3647 -
1691679205.7336907-CDS-H-elongata_contig15451:3492..36471691679205.7336907-CDS-H-elongata_contig15451:3492..3647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 3493..3647 -
1622929912.4607923-CDS-H-elongata_contig15451:4505..46971622929912.4607923-CDS-H-elongata_contig15451:4505..4697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 4506..4697 -
1691679205.7409518-CDS-H-elongata_contig15451:4505..46971691679205.7409518-CDS-H-elongata_contig15451:4505..4697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 4506..4697 -
1622929912.4783006-CDS-H-elongata_contig15451:5149..52471622929912.4783006-CDS-H-elongata_contig15451:5149..5247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 5150..5247 -
1691679205.7509053-CDS-H-elongata_contig15451:5149..52471691679205.7509053-CDS-H-elongata_contig15451:5149..5247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 5150..5247 -
1622929912.4931445-CDS-H-elongata_contig15451:6159..62081622929912.4931445-CDS-H-elongata_contig15451:6159..6208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 6160..6208 -
1691679205.7582157-CDS-H-elongata_contig15451:6159..62081691679205.7582157-CDS-H-elongata_contig15451:6159..6208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 6160..6208 -
1622929912.5074189-CDS-H-elongata_contig15451:6533..66231622929912.5074189-CDS-H-elongata_contig15451:6533..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 6534..6623 -
1691679205.765286-CDS-H-elongata_contig15451:6533..66231691679205.765286-CDS-H-elongata_contig15451:6533..6623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 6534..6623 -
1622929912.5245912-CDS-H-elongata_contig15451:7006..70961622929912.5245912-CDS-H-elongata_contig15451:7006..7096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 7007..7096 -
1691679205.772749-CDS-H-elongata_contig15451:7006..70961691679205.772749-CDS-H-elongata_contig15451:7006..7096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 7007..7096 -
1622929912.5466843-CDS-H-elongata_contig15451:7323..75631622929912.5466843-CDS-H-elongata_contig15451:7323..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 7324..7563 -
1691679205.7799356-CDS-H-elongata_contig15451:7323..75631691679205.7799356-CDS-H-elongata_contig15451:7323..7563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15451 7324..7563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15451.3585.1prot_H-elongata_contig15451.3585.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15451 852..7563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15451.3585.1

>prot_H-elongata_contig15451.3585.1 ID=prot_H-elongata_contig15451.3585.1|Name=mRNA_H-elongata_contig15451.3585.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=523bp
TPVCRAFISPLYLKSSEGRRLLAYLFGLHQSLILDIHAVVRAQIPGARMP
VLAAYGEIYFRVWRGADGPYLEKVEIHCLQDLMHACIHASTSKMHASLLA
VLDGVHSQKKTKGMDAALLRLYGPVLWRALRVANPTVRAQACQVLVDAFP
LQDPAAGAAAYEAVLRQQFDALAALLEDGHPRVRAVAAKGACHVLRVYWE
MIPMPTTRALLARVVGRLASDGASAMVRLGAVEGLIELLGCPASHSVLKA
MLPSVFSKLVHDKNKRVRVTLVELLRLVKGMRSIKYYHLVPVDHILARLA
EDHLTCPASASKLTELILNSYFPTGPGVTGSLQVSRCLTLLSQDEGAATA
FYSRLHQHAGLPSAAKVLAMLVRCAVVAALNRDEGAGRTLPQNVVAESER
EKKEGGRGRSKRKDLDAEEGRREDRTNKRTLNASDAKSMSGVLKLIATIW
ESILPGLKESVNEPSLELIQQTVTVESLAALHGRFFRDEGCRSAFMRVAG
LAGLDLAPGMLEEVVVDMLALPA
back to top

mRNA from alignment at H-elongata_contig15451:852..7563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15451.3585.1 ID=mRNA_H-elongata_contig15451.3585.1|Name=mRNA_H-elongata_contig15451.3585.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6712bp|location=Sequence derived from alignment at H-elongata_contig15451:852..7563- (Himanthalia elongata Himel1 dioecious)
ACGCCCGTTTGCAGGGCGTTCATCTCCCCCCTGTACCTCAAGTCCAGCGA AGGCAGGCGTCTTCTGGCGTATCTTTTCGGCCTGCACCAGTCGCTGATCC TGGACATCCACGCCGTCGTCCGGGCACAGATTCCGGGCGCCAGGATGCCC GTGCTCGCGGCCTACGGAGAGATTTATTTCCGTGTGTGGAGAGGGGCGGA CGGGCCGTACCTGGAGAAAGTAGAGATACACTGCCTCCAGGTGGGAATTG GTTTGGCCCTAAGGAGACGAAACATTCTTTCGTAGTGTGGTAAAGAGACC AGGGGCAGGGCTTGGCGTGGTGCGTGCGACGCGCGTTCAGCAGCGGTAGC AGCAGCAGCAGCAGATATAGCAGGAAATATATATTATGGTTCTACTATTA ATAGGCGTGTTGTGCTTTCCCTCCTTTTTGCTCTCAAATTTTGTGTTCGG TCAATTTTTCTCCACAGGACCTAATGCACGCCTGTATTCACGCCTCCACG TCCAAGATGCACGCGAGTCTACTCGCGGTGCTGGATGGCGTCCACTCCCA GAAGAAGGTGCGAATTGTGACCTATTACCATCGCAAAAGGAGGAATTCGG GAGGGGAAACATGAAACGCTCTTCCCAGCACCCCTCCGCGTTTTTTCGTA CTGATTTGCCACAATGGATGTATGGTTATGTCGTCCTCTGCCGAGCATCG ATTGCTCTGCGGTCCGTCAATCCAACCTCTCCCTATGATATTGCACGCTT CCCGTTCCAAATCCATTCTCCATAATAAATAAAATTCATTGTCATGATCA CGATAGTAGTAATAATAATAACAATATTTTCCCTTTTTTGCACATAAAAA GACTAATTCCAACTGATTTTCTTGAAAAATGGCGAAGTGTTTCCCCATCC TTACCTAGCTTGTCTTTGCCTCGCACCTTGGGGTTTCTAGACCAAGGGCA TGGACGCCGCTCTTCTTCGCCTATACGGACCCGTCCTGTGGAGAGCGCTT CGCGTGGCCAACCCCACCGTCAGGGCTCAGGTGCGTGCCGCGCAGAGGGC GCGCGTGCCGAGGGGGAGAAATCGATAGGTCGATAGGTGAACGTCCTGGT ACAAAAATGTTCAGTAGTTGATGTGTAATTTTTGCGTGCTCCGTGACGAT GAGAATGGGCGCCTGCTTCAGGCCTATCACCTTGCCGAAAAATTGCACGG TCTTGGCTCGTTCTTAGTCCCCGAAGTCACTCCCCCCCCTCCCCCCCCTC CCTGACCGTGGTAAGTGAGATTCTCCCCGCGTGCACATTTTCCCTCTCCT TCGTTTGGTTGGTTGGTCGGTGTTTGTGTTTTTTGGGGGCACTTATTTGA CGCAGGCTTGTCAGGTGCTTGTCGACGCCTTCCCTTTACAAGATCCCGCT GCAGGTGCGATCTCGCCTACCTATAATACTTATTTTCTGTCTACTAGTAT CCGGCCACTGAAAACGGGTGGTACGTGGCGAAACGATGTGGGATGGCGCC GAGGAGCAAGGGCTATGTTATTTATAGGGAGCGCTTCCTACTTTTCTTTT TTCCCTTTTTCCTTTTTTCCCTTTTTTTTTTTTTTTTACGATTTGTTTTT GCGCCGAGGAGCAGGGGCTATGTTATTTATGGGGAGCGCTTCCTACTTTT CTTTTTTCCCTTTTTCCTTTTTTCCCTTTTTTTTTTTTATCTTTATATTG TTTATTTTTTCATTTCTTTCTTCGACGGCATAGCTAGTATCACTGTCTCC GTTTGCCGCCTTTTGTCCGTGTGCCTTGCTTGTGGCTCTCTCCATGCTTG CGTCCGTGTAGTTCGTTCCAAGCGTTTTGTGTGGCGCGAATAGCGTATGT TTTGGTGGTTTTGGTGGTGTTGTGTTGGCATAATATAGCCCCTGGAGTGT TCCTTTTTGCGTGAAACCGTCGATTAATGGTGACTTGTTTAGGCACAAAG AAACGGCGCGAGCGCGCGTGCAGGAACAAACTAGAACTCTCTCTCTCTCT CGGGTGTTAATGGCTAGGTTGCTATTCATGTACGGCTCAAAAGTGCGGTA CGGTTGCTATAAGCGAGGGAAGTTCATCATTAGGCGGTAAACGGCTGACC TTTCCAAAGCACGCTTTTTAGTGCACAAAACGAAAGGAGACTTGAGAAGA CCGAAACAGCTCTGGCGAAGTAAGAATATCAGCATACCTACTCTTTTTAA TGATACATAGTGTTTGCTACATTTTTGTAAGCCGCAGTTGTACTTGTCTT ATGTTTACGCCTGCCCCGGAATAAAACGATGCCACTTTTTCTCTCGGGTG TCGGGTGGGATTATAGGCGCTGCCGCCTACGAAGCCGTGCTCCGGCAGCA GTTTGACGCCCTCGCAGCCCTGCTCGAAGACGGTCATCCACGGGTTAGGG CTGTTGCCGCCAAGGTGACAGAAAATTGCGCCCCGCTATAAAATCATGCA CACACCAGAGGTAGAGAGTAGATAGCATAGTGTGCTTGTTCGTTGTTTGT AAAGCGAAGATCTCTCGTCACGCGAGGAGCTTCGCGGGCGTCGATATTTT GATATTTTAGCGACCGTATTTGTGGTAGTTGTGTCTCGTGGGCATGCGTG ACGTAAAAAATTCGATCGTCGTGTTAAACGGGATGCTGGCTTTAGTGCAT GCTGACGACGGCTGCAAGTTTTGTACGATGGGCAGAGGATGTCCTCCGTG CTCGTTGGGGTATGGTAGGAACGAGGGGGGGGACAAAAAATGTGTATTGG TGCCAATGATCGTTAGACAAGCCGTTGCACGATGGGTCTGACAACCCTTT TCTATCTATCTCTGCACGATCAACGTGCCACGCGTACGTGTGGATTAAAA ACGGTTGCGTGATCAGGGCGCGTGTCATGTTTTGAGGGTGTACTGGGAGA TGATTCCCATGCCCACAACGAGGGCCCTGCTGGCAAGAGTTGTGGGGAGA CTGGCGAGCGATGGAGCCTCGGCGATGGTGCGCCTCGGGGCCGTGGAGGG GTTAATCGAGCTGCTTGGGTGTCCCGCTAGCCACAGCGTTCTGAAGGCAA TGCTGCCGGTGAGCAACTCGCGGCCGCCATTCTGGTGACATTTTGTCATA TAATAGGATATGGAGTGAAATTTGTCACGGAATTTTCGAGCACATTAAAA TTCAAGTGGAACGAAATTGGGTGAAATCGATAAGAATGCAACGAAATAAG CTATATGGGATGTGTAATGTGATGAGCGGTTAGTGTGATGGAATTATGTT TAGTGGATGTGTTGATATGGTATGGAATCGGATTACATGGGGTAGAATGG AACAACATTGATTGGAATAGTACGCATCCGATCCGGATTTCTCGTTGGTG ATTCCGTCAGTTCATCTTAGCTGTTAATATCTATTAGCGCATGCCTCGCT TTCCCTACCTCTTTGGCGTAAGAAACACTGACATGTGTCTGTGCGTCGTG TTAAAGTGCTTAACACTCCTTACATGTATAAGTAAAGCTTCGGTAGTGGA ACTCCCGCGTCTACGCTCAAACTGTACGTAGTACGACAAAAAGCCTCGTG GCGAGTACATTACCGGAATTCGGCGTTTAGACGGTTTCACCTTATAATAA TCCCATACTTTCCCTTGTTTATTTGTGGATGGATGTCTTGAGCGATGTGT CTCTAGACCGTGATCTCTTTAGCGATATACAAAACCCCCTCTCTCTCAGA CGGTAGCACCAGGAAATATTAGTGTTTTGAACGTATCGTAACAGGTTCTC GAGTAAAACATGGATTGCTTTCTCCCTGCTCCCCCCCCCCAGACCTCCAT AGGCGTTTAATCTTGATTGAATCTCCTCCCCCGCCCTCCTCTTTTCTTTT CCCCTCCACAAAAACCCCTCCATACGTTTTTTTGTTTCATCCACACAAAT AAATGCAATATCAAAGAGTGTTTTTTCAAAGCTGGTCCATGACAAGAACA AAAGGGTGCGGGTGACGTTGGTGGAGCTGCTAAGGCTGGTCAAGGGCATG AGGTCGATCAAGTACTATCACTTGGTACCCGTGGACCACATTCTCGCTCG CCTCGCGGAGGACCACCTGACGTGAGTCGCTGTCTCCAGCAGCTGCGCTG CGTGTTTTTCTTCCTAGGGTTGCGTTACCTAACAAGTCTTACGGCGTAGA TTTTCGAAGACGTACTAATTATAGTATACAAATAATGAGAAACAATTTTC GCAGGACGGTAGAGAGCGAACTCCGCTAGGTAGGATGGGATGGGATGGTT ATGCTACTTGTATAACTGCTGAAACTTCCTTCTGAGGAAAAGCGTATTTC TCAACATCGTACTTCACTGTGTTCACAAATCGCGAGCGCCACAAAATCAA GTGTCACGAAGCGCTACTGTGGTACGAACGGAGACAAACAAGAGCTATTG TATGCGCGCTTTTCCTCGCTATCTTTCTCTTCTTTTTTATTTTCGTACTT ATCCTTGTTGCGCGCTGCTGGGCGGAACCGCCGTGACTTTTAGCTGTCCC GCATCAGCGTCGAAGCTGACTGAGCTCATCTTGAACTCCTATTTCCCAAC AGGTGAGGAAGGCTGCATTAGGGAATACGCTTGCGTTTATAGCAGTGCCG TGTGCCGACACTTGGTGTACAAGAGGCATCGTGCCTTCTCTGGCATAGCC CTCTGCTTGTCAAGCGCCAAAGCGCGGCGGTGCCATCGGAGGGCTGCGAT CGCCTCCCCTTTCCCCCGTTGATGTTTTTTTCTTAAACATGCAGATGATT GTTGATCTCAAAGTCGGCGAAAAGATCGTGTGGCAAGGATATTCGCTCTT CTCCGGTTAAGGGTTTGTGTGAAAAAAGATGTGTACACCATCCCGGATCA ATAGCGCGATCGATTCGACAGCTCCAGCGGCAGCGGCAGAAGCAGAAGCA GCAGCAGCGGCCGCCATCACAACATGCAATACGGGTGCATCAATTTGTTT TATCGTTTATTCCTTTCTCCTATATGTCCACTCCCTCAATGGTATAGCAG CCAAGGCATGAAAAACTTGACTATGCCCCCATCCCCGCCCAATACTTATC GAACTCCCTCGGTGCCCCGGCGCGCGCGCTGCAGGTCCGGGCGTGACGGG TTCGCTTCAAGTGTCGCGCTGTCTGACATTGCTCTCCCAGGATGAGGGAG CCGCAACAGCGTTCTACTCAAGGCTGCATCAGCACGCCGGGTTGCCTTCA GCGGCGAAGGTCCTCGCTATGCTGGTGCGGTGTGCGGTCGTTGCCGCCCT TAATCGCGACGAGGGCGCCGGAAGAACGCTTCCTCAGAATGTGGTGGCGG AGTCGGAGAGGGAGAAAAAGGAGGGAGGGAGGGGAAGGAGTAAGAGGAAA GATTTGGATGCAGAAGAAGGGCGGAGGGAAGATAGGACAAACAAGAGGAC GCTAAACGCTTCGGACGCAAAGGTGTGGTAGCTGCGATGCGGCTGGTACT GCTGTCGGCATAGCCCCTTGGAACGTGCATTTTTTGGGTTATTTATTTTA TATTATATATTTATGTTAATAATTCGTGGCCATAGCGATGTGGTATGAGC GTGTGTACGCGGGTCGTTTCGGAGTTCCCCCGCCAAAATAATATTAAAGG TAGGCAAAAAATGACGCTGATAGTTTCCGTGGGCGATGTTGCTATTCCCC CCCCCCCTAACGCTCACCCCCTTCTTGGCGTTCGTGCCTGAAGGGGCCTG TTCGTAAGAGACACACGTTAGCGTCAAAGGTAACTCGAGCGTTCGCCATG ACGATATATAAACGTAGCTGATCTTGTGTTTCATTATATGCGATCGTGAC GTGCACGTATTGTGGACAACGTACACAGTCGATGTCCGGGGTACTAAAGC TGATCGCGACCATCTGGGAAAGCATTCTGCCTGGCCTGAAAGAGAGCGTC AACGAGCCTTCGCTCGAGCTGATACAGCAAACGGTCACGGGTGAGTTGAC TTGACTTGACTTGAGTCGGCGGTCGGTGCTCATGGTCCCCGCCCGGGAGA TCCTCCCCCCCCCCCCCCCCCCTCGGGGGCGCTACGGGCGTCTTTGGACC CCCCCCCCCCCCGCCACGCAGCGGCTCANNNNNNNNNNGGGGAGTTGCTT GGACTTGCTTTGGGGGGGCGGGCGGTCCTCATGGCCCCCCCCGGGGAAAC CCCCCCCCCCCCCCCCTCGCTTGGACGATAATAAGTTGCTTGAGGACCCC CAATCGCCGCATCAAGGAGGTGACGCAACGCAATCGAAGGACAAAATAGT TTCTCGCCTTCACCCTTCACCTATCATAGAAATATCGTAATACAAAACGC GATTGGTGGTTCTACCACACTTGCCCCCGCGACTCATGTCGCATCGCTCG CCCGCGCTACGTGCGCTGAATCTAAGTACTCAGTACTTTATTGTGCCTCG TCCCATTTCATTCTATACCATCCCCTCTTTTTGTCCTGTCCAACATGTCA CACCATGCCACACCACATTTTTTATTTCGTTCCGTTCCATACTAATCCAT TCCGTGATATCCCATATCATTACCCCTCCCTGGACCAAAATGACACCGGT TGCTGCGATCAAACAGTCGAGTCCCTCGCTGCTCTGCACGGGCGCTTCTT CCGGGACGAAGGCTGCCGCTCGGCCTTCATGCGCGTTGCTGGGCTAGCCG GGCTTGACCTGGCTCCGGGCATGCTGGAAGAAGTGGTGGTGGATATGCTC GCTCTTCCTGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15451:852..7563-

>mRNA_H-elongata_contig15451.3585.1 ID=mRNA_H-elongata_contig15451.3585.1|Name=mRNA_H-elongata_contig15451.3585.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3138bp|location=Sequence derived from alignment at H-elongata_contig15451:852..7563- (Himanthalia elongata Himel1 dioecious)
ACGCCCGTTTGCAGGGCGTTCATCTCCCCCCTGTACCTCAAGTCCAGCGA
AGGCAGGCGTCTTCTGGCGTATCTTTTCGGCCTGCACCAGTCGCTGATCC
TGGACATCCACGCCGTCGTCCGGGCACAGATTCCGGGCGCCAGGATGCCC
GTGCTCGCGGCCTACGGAGAGATTTATTTCCGTGTGTGGAGAGGGGCGGA
CGGGCCGTACCTGGAGAAAGTAGAGATACACTGCCTCCAGACGCCCGTTT
GCAGGGCGTTCATCTCCCCCCTGTACCTCAAGTCCAGCGAAGGCAGGCGT
CTTCTGGCGTATCTTTTCGGCCTGCACCAGTCGCTGATCCTGGACATCCA
CGCCGTCGTCCGGGCACAGATTCCGGGCGCCAGGATGCCCGTGCTCGCGG
CCTACGGAGAGATTTATTTCCGTGTGTGGAGAGGGGCGGACGGGCCGTAC
CTGGAGAAAGTAGAGATACACTGCCTCCAGGACCTAATGCACGCCTGTAT
TCACGCCTCCACGTCCAAGATGCACGCGAGTCTACTCGCGGTGCTGGATG
GCGTCCACTCCCAGAAGAAGGACCTAATGCACGCCTGTATTCACGCCTCC
ACGTCCAAGATGCACGCGAGTCTACTCGCGGTGCTGGATGGCGTCCACTC
CCAGAAGAAGACCAAGGGCATGGACGCCGCTCTTCTTCGCCTATACGGAC
CCGTCCTGTGGAGAGCGCTTCGCGTGGCCAACCCCACCGTCAGGGCTCAG
ACCAAGGGCATGGACGCCGCTCTTCTTCGCCTATACGGACCCGTCCTGTG
GAGAGCGCTTCGCGTGGCCAACCCCACCGTCAGGGCTCAGGCTTGTCAGG
TGCTTGTCGACGCCTTCCCTTTACAAGATCCCGCTGCAGGCTTGTCAGGT
GCTTGTCGACGCCTTCCCTTTACAAGATCCCGCTGCAGGCGCTGCCGCCT
ACGAAGCCGTGCTCCGGCAGCAGTTTGACGCCCTCGCAGCCCTGCTCGAA
GACGGTCATCCACGGGTTAGGGCTGTTGCCGCCAAGGCGCTGCCGCCTAC
GAAGCCGTGCTCCGGCAGCAGTTTGACGCCCTCGCAGCCCTGCTCGAAGA
CGGTCATCCACGGGTTAGGGCTGTTGCCGCCAAGGGCGCGTGTCATGTTT
TGAGGGTGTACTGGGAGATGATTCCCATGCCCACAACGAGGGCCCTGCTG
GCAAGAGTTGTGGGGAGACTGGCGAGCGATGGAGCCTCGGCGATGGTGCG
CCTCGGGGCCGTGGAGGGGTTAATCGAGCTGCTTGGGTGTCCCGCTAGCC
ACAGCGTTCTGAAGGCAATGCTGCCGGGCGCGTGTCATGTTTTGAGGGTG
TACTGGGAGATGATTCCCATGCCCACAACGAGGGCCCTGCTGGCAAGAGT
TGTGGGGAGACTGGCGAGCGATGGAGCCTCGGCGATGGTGCGCCTCGGGG
CCGTGGAGGGGTTAATCGAGCTGCTTGGGTGTCCCGCTAGCCACAGCGTT
CTGAAGGCAATGCTGCCGAGTGTTTTTTCAAAGCTGGTCCATGACAAGAA
CAAAAGGGTGCGGGTGACGTTGGTGGAGCTGCTAAGGCTGGTCAAGGGCA
TGAGGTCGATCAAGTACTATCACTTGGTACCCGTGGACCACATTCTCGCT
CGCCTCGCGGAGGACCACCTGACAGTGTTTTTTCAAAGCTGGTCCATGAC
AAGAACAAAAGGGTGCGGGTGACGTTGGTGGAGCTGCTAAGGCTGGTCAA
GGGCATGAGGTCGATCAAGTACTATCACTTGGTACCCGTGGACCACATTC
TCGCTCGCCTCGCGGAGGACCACCTGACCTGTCCCGCATCAGCGTCGAAG
CTGACTGAGCTCATCTTGAACTCCTATTTCCCAACAGCTGTCCCGCATCA
GCGTCGAAGCTGACTGAGCTCATCTTGAACTCCTATTTCCCAACAGGTCC
GGGCGTGACGGGTTCGCTTCAAGTGTCGCGCTGTCTGACATTGCTCTCCC
AGGATGAGGGAGCCGCAACAGCGTTCTACTCAAGGCTGCATCAGCACGCC
GGGTTGCCTTCAGCGGCGAAGGTCCTCGCTATGCTGGTGCGGTGTGCGGT
CGTTGCCGCCCTTAATCGCGACGAGGGCGCCGGAAGAACGCTTCCTCAGA
ATGTGGTGGCGGAGTCGGAGAGGGAGAAAAAGGAGGGAGGGAGGGGAAGG
AGTAAGAGGAAAGATTTGGATGCAGAAGAAGGGCGGAGGGAAGATAGGAC
AAACAAGAGGACGCTAAACGCTTCGGACGCAAAGGTCCGGGCGTGACGGG
TTCGCTTCAAGTGTCGCGCTGTCTGACATTGCTCTCCCAGGATGAGGGAG
CCGCAACAGCGTTCTACTCAAGGCTGCATCAGCACGCCGGGTTGCCTTCA
GCGGCGAAGGTCCTCGCTATGCTGGTGCGGTGTGCGGTCGTTGCCGCCCT
TAATCGCGACGAGGGCGCCGGAAGAACGCTTCCTCAGAATGTGGTGGCGG
AGTCGGAGAGGGAGAAAAAGGAGGGAGGGAGGGGAAGGAGTAAGAGGAAA
GATTTGGATGCAGAAGAAGGGCGGAGGGAAGATAGGACAAACAAGAGGAC
GCTAAACGCTTCGGACGCAAAGTCGATGTCCGGGGTACTAAAGCTGATCG
CGACCATCTGGGAAAGCATTCTGCCTGGCCTGAAAGAGAGCGTCAACGAG
CCTTCGCTCGAGCTGATACAGCAAACGGTCACGGTCGATGTCCGGGGTAC
TAAAGCTGATCGCGACCATCTGGGAAAGCATTCTGCCTGGCCTGAAAGAG
AGCGTCAACGAGCCTTCGCTCGAGCTGATACAGCAAACGGTCACGGTCGA
GTCCCTCGCTGCTCTGCACGGGCGCTTCTTCCGGGACGAAGGCTGCCGCT
CGGCCTTCATGCGCGTTGCTGGGCTAGCCGGGCTTGACCTGGCTCCGGGC
ATGCTGGAAGAAGTGGTGGTGGATATGCTCGCTCTTCCTGCGTCGAGTCC
CTCGCTGCTCTGCACGGGCGCTTCTTCCGGGACGAAGGCTGCCGCTCGGC
CTTCATGCGCGTTGCTGGGCTAGCCGGGCTTGACCTGGCTCCGGGCATGC
TGGAAGAAGTGGTGGTGGATATGCTCGCTCTTCCTGCG
back to top