mRNA_H-elongata_contig15416.3570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15416.3570.1
Unique NamemRNA_H-elongata_contig15416.3570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15416.3570.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.990e-10
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:    3 GVPVYEGQLPVRKWYTRYMGGVHLSDQYNAVHAFMHRAVNYFWRRVFEQKLAQPVTSGWLMYQAWLTTL 209
            G  V   Q   RK Y + MGGV ++DQ    HA  HR + +FWRRVF+QK AQ V++GWL++  W   L
Sbjct:  254 GEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVL 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15416.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KQZ5_9PHAE3.990e-1046.38DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15416contigH-elongata_contig15416:7007..7509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size483
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15416.3570.1prot_H-elongata_contig15416.3570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15416 7071..7453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.911202-UTR-H-elongata_contig15416:7006..70701622929910.911202-UTR-H-elongata_contig15416:7006..7070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15416 7007..7070 -
1691679205.2020388-UTR-H-elongata_contig15416:7006..70701691679205.2020388-UTR-H-elongata_contig15416:7006..7070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15416 7007..7070 -
1622929910.9629734-UTR-H-elongata_contig15416:7453..75091622929910.9629734-UTR-H-elongata_contig15416:7453..7509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15416 7454..7509 -
1691679205.2336657-UTR-H-elongata_contig15416:7453..75091691679205.2336657-UTR-H-elongata_contig15416:7453..7509Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15416 7454..7509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929910.9265652-CDS-H-elongata_contig15416:7070..71731622929910.9265652-CDS-H-elongata_contig15416:7070..7173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15416 7071..7173 -
1691679205.212656-CDS-H-elongata_contig15416:7070..71731691679205.212656-CDS-H-elongata_contig15416:7070..7173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15416 7071..7173 -
1622929910.9449713-CDS-H-elongata_contig15416:7193..74531622929910.9449713-CDS-H-elongata_contig15416:7193..7453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15416 7194..7453 -
1691679205.222517-CDS-H-elongata_contig15416:7193..74531691679205.222517-CDS-H-elongata_contig15416:7193..7453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15416 7194..7453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15416.3570.1

>prot_H-elongata_contig15416.3570.1 ID=prot_H-elongata_contig15416.3570.1|Name=mRNA_H-elongata_contig15416.3570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGGVHLSDQYNAVHAFMHRAVNYFWRRVFEQKLAQPVTSGWLMYQAWLTT
LDWEEVIIFREDMDTVRLELEAAGDGIDLQDVEGVIRRPLAQCIEGSLDG
RPVLPPHVILSGGRSRPAAG*
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mRNA from alignment at H-elongata_contig15416:7007..7509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15416.3570.1 ID=mRNA_H-elongata_contig15416.3570.1|Name=mRNA_H-elongata_contig15416.3570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig15416:7007..7509- (Himanthalia elongata Himel1 dioecious)
AGGGCGTTCCGGTCTATGAAGGTCAACTACCAGTTCGTAAGTGGTACACC
AGGTACATGGGCGGGGTACACTTATCGGATCAGTACAACGCCGTCCATGC
ATTCATGCACCGGGCGGTAAACTACTTTTGGCGACGCGTGTTTGAGCAGA
AATTGGCACAACCTGTAACAAGCGGGTGGCTCATGTACCAAGCGTGGTTG
ACGACCTTAGACTGGGAAGAAGTCATAATATTTAGAGAGGACATGGATAC
GGTGCGGTTAGAGTTGGAGGCAGCTGGCGACGGCATAGATCTCCAGGACG
TGGAAGGGGTGATACGGCAGCGGTTTAATATTTCAGTCGACCGCTTGCGC
AATGTATCGAAGGTTCGCTGGATGGAAGACCTGTGCTGCCACCTCATGTC
ATTTTGTCAGGAGGGAGGTCTCGCCCAGCAGCAGGTTGATGCCCGTACCG
GTTGTAAGAAGCGCTTGGGCCGTGGGAGTCGGGGAGCGAGAAAGGGCAAG
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig15416:7007..7509-

>mRNA_H-elongata_contig15416.3570.1 ID=mRNA_H-elongata_contig15416.3570.1|Name=mRNA_H-elongata_contig15416.3570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig15416:7007..7509- (Himanthalia elongata Himel1 dioecious)
ATGGGCGGGGTACACTTATCGGATCAGTACAACGCCGTCCATGCATTCAT
GCACCGGGCGGTAAACTACTTTTGGCGACGCGTGTTTGAGCAGAAATTGG
CACAACCTGTAACAAGCGGGTGGCTCATGTACCAAGCGTGGTTGACGACC
TTAGACTGGGAAGAAGTCATAATATTTAGAGAGGACATGGATACGGTGCG
GTTAGAGTTGGAGGCAGCTGGCGACGGCATAGATCTCCAGGACGTGGAAG
GGGTGATACGATGGGCGGGGTACACTTATCGGATCAGTACAACGCCGTCC
ATGCATTCATGCACCGGGCGGTAAACTACTTTTGGCGACGCGTGTTTGAG
CAGAAATTGGCACAACCTGTAACAAGCGGGTGGCTCATGTACCAAGCGTG
GTTGACGACCTTAGACTGGGAAGAAGTCATAATATTTAGAGAGGACATGG
ATACGGTGCGGTTAGAGTTGGAGGCAGCTGGCGACGGCATAGATCTCCAG
GACGTGGAAGGGGTGATACGTCGACCGCTTGCGCAATGTATCGAAGGTTC
GCTGGATGGAAGACCTGTGCTGCCACCTCATGTCATTTTGTCAGGAGGGA
GGTCTCGCCCAGCAGCAGGTTGATCGACCGCTTGCGCAATGTATCGAAGG
TTCGCTGGATGGAAGACCTGTGCTGCCACCTCATGTCATTTTGTCAGGAG
GGAGGTCTCGCCCAGCAGCAGGTTGA
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