mRNA_H-elongata_contig153937.3558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153937.3558.1
Unique NamemRNA_H-elongata_contig153937.3558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig153937.3558.1 vs. uniprot
Match: D7FQA2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.960e-17
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 TFKRKITRLRHLYVFNLARKIMRRMFAEAGLGPGNDPTPPPGPF--DEIEIEAASP-GMPKSMQVQAAILQRRQVLLHEIERTTREENELEKAIE 276
            T  +K+  LR   VFNLA K+MRR F +AGLGPGNDP PP GP   D+ ++E A   G+P  MQV AA L+++  +  EIE+T R E EL+ AIE
Sbjct:  503 TLTQKVKTLRRTLVFNLACKVMRRRFKDAGLGPGNDPNPPKGPIVVDDSQLEGAGDRGLPPDMQVHAARLEQKNAVQREIEQTERREQELQHAIE 597
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153937.3558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA2_ECTSI4.960e-1751.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153937contigH-elongata_contig153937:551..1153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.8371444-CDS-H-elongata_contig153937:550..7011622929909.8371444-CDS-H-elongata_contig153937:550..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153937 551..701 +
1691679204.823429-CDS-H-elongata_contig153937:550..7011691679204.823429-CDS-H-elongata_contig153937:550..701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153937 551..701 +
1622929909.8590612-CDS-H-elongata_contig153937:1028..11531622929909.8590612-CDS-H-elongata_contig153937:1028..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153937 1029..1153 +
1691679204.8411312-CDS-H-elongata_contig153937:1028..11531691679204.8411312-CDS-H-elongata_contig153937:1028..1153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153937 1029..1153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153937.3558.1prot_H-elongata_contig153937.3558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153937 551..1153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153937.3558.1

>prot_H-elongata_contig153937.3558.1 ID=prot_H-elongata_contig153937.3558.1|Name=mRNA_H-elongata_contig153937.3558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
TFKRKITRLRHLYVFNLARKIMRRMFAEAGLGPGNDPTPPPGPFDEIEIE
AASPGMPKSMQVQAAILQRRQVLLHEIERTTREENELEKAIE
back to top

mRNA from alignment at H-elongata_contig153937:551..1153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153937.3558.1 ID=mRNA_H-elongata_contig153937.3558.1|Name=mRNA_H-elongata_contig153937.3558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig153937:551..1153+ (Himanthalia elongata Himel1 dioecious)
ACTTTCAAACGGAAGATTACCCGTCTGAGGCATCTATATGTGTTCAACTT
GGCTAGGAAGATCATGAGGAGAATGTTTGCCGAAGCCGGCCTTGGTCCGG
GTAACGATCCAACTCCACCTCCGGGACCCTTTGATGAAATTGAAATAGAA
GGTAAAGATAAAGCCTCCTTCAAACGAGCCCGTTGTCTGTACGTAGAGGG
TCCCAGGTAAAAACAATAGTTCCTGTATACTTAATGTCATTCAGTGACGA
CCTCCCTCGTGGGTTTTCTCCTGAGGAGGACCCGTAAGAGTTCTGACTCG
ATACCAAATCTCCCAATTACCTACCGGGGCGATTTCTTTCCCTCTGCTGC
TTGCCTCGAAGGTCATCGCACCCTTGTATTGATTTTCCACTTCAGAGCCT
TCTCTCGCTCTTGCTATAACTCGACCCCTCCGTTGCGACATACCGATCTC
GTTTCAATTGGAGCCAATCATCGGGTAGCAGCGTCCCCCGGTATGCCAAA
GAGTATGCAAGTCCAAGCCGCAATCCTCCAGCGAAGGCAGGTCCTTCTAC
ACGAGATCGAACGAACCACCCGAGAAGAAAATGAGCTGGAAAAGGCGATC
GAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig153937:551..1153+

>mRNA_H-elongata_contig153937.3558.1 ID=mRNA_H-elongata_contig153937.3558.1|Name=mRNA_H-elongata_contig153937.3558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig153937:551..1153+ (Himanthalia elongata Himel1 dioecious)
ACTTTCAAACGGAAGATTACCCGTCTGAGGCATCTATATGTGTTCAACTT
GGCTAGGAAGATCATGAGGAGAATGTTTGCCGAAGCCGGCCTTGGTCCGG
GTAACGATCCAACTCCACCTCCGGGACCCTTTGATGAAATTGAAATAGAA
GACTTTCAAACGGAAGATTACCCGTCTGAGGCATCTATATGTGTTCAACT
TGGCTAGGAAGATCATGAGGAGAATGTTTGCCGAAGCCGGCCTTGGTCCG
GGTAACGATCCAACTCCACCTCCGGGACCCTTTGATGAAATTGAAATAGA
AGCAGCGTCCCCCGGTATGCCAAAGAGTATGCAAGTCCAAGCCGCAATCC
TCCAGCGAAGGCAGGTCCTTCTACACGAGATCGAACGAACCACCCGAGAA
GAAAATGAGCTGGAAAAGGCGATCGAACAGCGTCCCCCGGTATGCCAAAG
AGTATGCAAGTCCAAGCCGCAATCCTCCAGCGAAGGCAGGTCCTTCTACA
CGAGATCGAACGAACCACCCGAGAAGAAAATGAGCTGGAAAAGGCGATCG
AA
back to top