mRNA_H-elongata_contig153833.3553.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153833.3553.1
Unique NamemRNA_H-elongata_contig153833.3553.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 251 bits (641), Expect = 5.920e-84
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:   13 TITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            T TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    4 TETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.390e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 252 bits (644), Expect = 1.970e-83
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:   13 TITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            T+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   71 TVKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 248 bits (634), Expect = 5.650e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (635), Expect = 6.360e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: X1X909_ACYPI (Histone domain-containing protein n=2 Tax=Bilateria TaxID=33213 RepID=X1X909_ACYPI)

HSP 1 Score: 249 bits (635), Expect = 8.060e-83
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1 
Query:    1 SKTNTITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            S TN+  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   15 SSTNSFDMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 157
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: A0A3Q3G4G3_KRYMA (Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3G4G3_KRYMA)

HSP 1 Score: 248 bits (632), Expect = 1.390e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   16 ITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    5 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: A0A3B5KKG2_TAKRU (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A3B5KKG2_TAKRU)

HSP 1 Score: 247 bits (631), Expect = 1.790e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   16 ITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            +TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: B0WZ61_CULQU (Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=B0WZ61_CULQU)

HSP 1 Score: 248 bits (632), Expect = 1.890e-82
Identity = 133/142 (93.66%), Postives = 139/142 (97.89%), Query Frame = 1 
Query:    4 KTNTITMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            K+ +I MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   10 KSTSIAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 151
[Close]
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 3.270e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   22 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 429
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153833.3553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK5.920e-8497.84Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA1.390e-8399.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
K0S7I6_THAOC1.970e-8397.84Histone domain-containing protein n=8 Tax=Bacillar... [more]
A0A1Z5K8H0_FISSO5.650e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA6.360e-8398.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
X1X909_ACYPI8.060e-8393.71Histone domain-containing protein n=2 Tax=Bilateri... [more]
A0A3Q3G4G3_KRYMA1.390e-8295.65Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A3B5KKG2_TAKRU1.790e-8295.65Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
B0WZ61_CULQU1.890e-8293.66Histone H3.1t n=1 Tax=Culex quinquefasciatus TaxID... [more]
D7G4I9_ECTSI3.270e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153833contigH-elongata_contig153833:107..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.9e-66
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.5159125-CDS-H-elongata_contig153833:106..5171622929909.5159125-CDS-H-elongata_contig153833:106..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153833 107..517 -
1691679204.6390896-CDS-H-elongata_contig153833:106..5171691679204.6390896-CDS-H-elongata_contig153833:106..517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153833 107..517 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929909.5308285-UTR-H-elongata_contig153833:517..5381622929909.5308285-UTR-H-elongata_contig153833:517..538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153833 518..538 -
1691679204.6504672-UTR-H-elongata_contig153833:517..5381691679204.6504672-UTR-H-elongata_contig153833:517..538Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153833 518..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153833.3553.1prot_H-elongata_contig153833.3553.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153833 107..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153833.3553.1

>prot_H-elongata_contig153833.3553.1 ID=prot_H-elongata_contig153833.3553.1|Name=mRNA_H-elongata_contig153833.3553.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at H-elongata_contig153833:107..538-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153833.3553.1 ID=mRNA_H-elongata_contig153833.3553.1|Name=mRNA_H-elongata_contig153833.3553.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig153833:107..538- (Himanthalia elongata Himel1 dioecious)
AGCAAGACCAACACCATCACAATGGCCAGAACCAAGCAAACTGCCCGGAA
GTCTACTGGCGGAAAAGCCCCCCGCAAGCAACTCGCCACCAAAGCTGCTC
GCAAGTCTGCTCCTGCTACCGGCGGTGTTAAGAAACCTCACCGCTACAGG
CCAGGTACCGTGGCCCTCCGCGAGATCCGCCGGTACCAGAAGTCTACGGA
GTTGCTTATCCGCAAGTTGCCTTTCCAGCGCCTGGTGCGTGAGATTGCAC
AGGACTTCAAGAGCGACTTGCGCTTCCAAGGCTCCGCGGTGCTGGCCCTG
CAGGAGGCGGCCGAAGCGTACCTGGTTGGTCTTTTTGAAGACACAAATTT
GTGCGCCATTCACGCCAAGCGTGTTACCATCATGCCGAAGGACATCCAAC
TGGCCAGGCGTATTCGCGGCGAGCGATCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig153833:107..538-

>mRNA_H-elongata_contig153833.3553.1 ID=mRNA_H-elongata_contig153833.3553.1|Name=mRNA_H-elongata_contig153833.3553.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig153833:107..538- (Himanthalia elongata Himel1 dioecious)
ATGGCCAGAACCAAGCAAACTGCCCGGAAGTCTACTGGCGGAAAAGCCCC
CCGCAAGCAACTCGCCACCAAAGCTGCTCGCAAGTCTGCTCCTGCTACCG
GCGGTGTTAAGAAACCTCACCGCTACAGGCCAGGTACCGTGGCCCTCCGC
GAGATCCGCCGGTACCAGAAGTCTACGGAGTTGCTTATCCGCAAGTTGCC
TTTCCAGCGCCTGGTGCGTGAGATTGCACAGGACTTCAAGAGCGACTTGC
GCTTCCAAGGCTCCGCGGTGCTGGCCCTGCAGGAGGCGGCCGAAGCGTAC
CTGGTTGGTCTTTTTGAAGACACAAATTTGTGCGCCATTCACGCCAAGCG
TGTTACCATCATGCCGAAGGACATCCAACTGGCCAGGCGTATTCGCGGCG
AGCGATCTTAGATGGCCAGAACCAAGCAAACTGCCCGGAAGTCTACTGGC
GGAAAAGCCCCCCGCAAGCAACTCGCCACCAAAGCTGCTCGCAAGTCTGC
TCCTGCTACCGGCGGTGTTAAGAAACCTCACCGCTACAGGCCAGGTACCG
TGGCCCTCCGCGAGATCCGCCGGTACCAGAAGTCTACGGAGTTGCTTATC
CGCAAGTTGCCTTTCCAGCGCCTGGTGCGTGAGATTGCACAGGACTTCAA
GAGCGACTTGCGCTTCCAAGGCTCCGCGGTGCTGGCCCTGCAGGAGGCGG
CCGAAGCGTACCTGGTTGGTCTTTTTGAAGACACAAATTTGTGCGCCATT
CACGCCAAGCGTGTTACCATCATGCCGAAGGACATCCAACTGGCCAGGCG
TATTCGCGGCGAGCGATCTTAG
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