mRNA_H-elongata_contig153235.3513.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI) HSP 1 Score: 207 bits (527), Expect = 2.270e-60 Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
MG S+PMDVL+TKPEHSLVFQSRDASFHPGC DKRNIRVN DG G+AWY P+ I++GGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA L GNVNHENTHPFK
Sbjct: 1 MGASVPMDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFK 111
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE) HSP 1 Score: 198 bits (504), Expect = 7.080e-59 Identity = 90/105 (85.71%), Postives = 96/105 (91.43%), Query Frame = 1
Query: 19 MDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
MDVL+TKPEHSLVFQSRDASFHPGC DKRNIRVN DG G+AWY P+ I++GGCVVKFPTPAWS+ NLLNIAKFVESGLVFAHVRAA DGA L GNVNHENTHPFK
Sbjct: 1 MDVLVTKPEHSLVFQSRDASFHPGCADKRNIRVNGDGFGIAWYTPRRIEEGGCVVKFPTPAWSNTNLLNIAKFVESGLVFAHVRAASDGAVLVGNVNHENTHPFK 105
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A482RVP5_9ARCH (Class II glutamine amidotransferase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVP5_9ARCH) HSP 1 Score: 107 bits (268), Expect = 3.270e-27 Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 28 LITKPEHSLVFQSRDASFHPGCLDK---RNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGN---VNHENTHPFK 333
L+T P +SL++QSRDA++HPG DK RNI VN DG GV WY + + GGC KF TPAWS+ NL +I + V S LV AH+RAA G V+HEN HPF+
Sbjct: 17 LVTNPSNSLIYQSRDAAYHPGVTDKTHRRNILVNGDGFGVCWYG-ENVSKGGCCFKFVTPAWSNGNLRSIGEHVASHLVCAHIRAASSGHDPLHERVAVSHENCHPFR 123
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: UPI001BC06FEB (class II glutamine amidotransferase n=1 Tax=unclassified Jannaschia TaxID=2645469 RepID=UPI001BC06FEB) HSP 1 Score: 79.7 bits (195), Expect = 1.300e-15 Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPF 330
+GPSIP++ ++T+P HSL+ QS+ A D+ + VN DG G+AWY P+ + G + + PAWS NL ++ + + S L AHVRA TG + N HPF
Sbjct: 8 VGPSIPLERIVTRPRHSLLQQSQHA-------DEAKLAVNGDGFGMAWYVPETPEPG--LYRDVQPAWSDANLASLCRVLRSELFLAHVRAG-----TTGGTSRANCHPF 103
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A1N6GGW4_9RHOB (Glutamine amidotransferase n=1 Tax=Vannielia litorea TaxID=1217970 RepID=A0A1N6GGW4_9RHOB) HSP 1 Score: 79.0 bits (193), Expect = 2.070e-15 Identity = 51/111 (45.95%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 4 GPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFKV 336
G I ++ +I+KPEHSL+ QSR+A C +N DGVGVAWY+ + D G + K PAWS PNL I + V SGL AHVRA+ G A + N N HPF V
Sbjct: 9 GAQIYLEEVISKPEHSLIIQSREAH---SC----KTAINADGVGVAWYDGRP-DPG--LYKNVHPAWSDPNLRQIVRQVRSGLFMAHVRAS-TGTATSYN----NCHPFAV 104
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A0D8ZVA1_9CYAN (Glutamine amidotransferase n=1 Tax=Aliterella atlantica CENA595 TaxID=1618023 RepID=A0A0D8ZVA1_9CYAN) HSP 1 Score: 79.0 bits (193), Expect = 2.180e-15 Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
+GPSIP+D ++TKPEHSLV QS + P + ++ VN DG G+ WY+P+ D V K P W+ NL ++ +++ES + ++R+A G A V+ N PFK
Sbjct: 8 IGPSIPLDYVLTKPEHSLVVQS----YQP--REMKSGVVNADGFGIGWYHPQK-DTAPFVYKNILPIWNDVNLSSLGRYIESDCILGYIRSATTGQA----VDMSNCQPFK 107
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A1H2VHY1_9RHOB (Glutamine amidotransferase n=2 Tax=Roseicitreum antarcticum TaxID=564137 RepID=A0A1H2VHY1_9RHOB) HSP 1 Score: 79.0 bits (193), Expect = 2.550e-15 Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFKV 336
+G + M+ LI++PEHSL+ QSRDA C +N DGVGVAWY + + G + K PAWS PNLL IA+ + + + AHVRA+ A ++ N HPF V
Sbjct: 8 LGKPVFMEDLISRPEHSLIHQSRDAH----CC---KTAINADGVGVAWYGARP-EPG--IYKDTRPAWSDPNLLQIARQIAAPVFLAHVRASTGSAT-----SYNNCHPFAV 104
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A2W1JZH4_9CYAN (Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase n=1 Tax=Acaryochloris thomasi RCC1774 TaxID=1764569 RepID=A0A2W1JZH4_9CYAN) HSP 1 Score: 77.0 bits (188), Expect = 1.130e-14 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
+GPS+ +D L+ KPEHSL+ QS L +N DG G+ WY+P+ C+ + TP WS NL N+A +VESG + A+VR+A G + V N P++
Sbjct: 8 LGPSVRLDTLLLKPEHSLIAQSYQPREMTAGL------LNADGFGLGWYHPEQ-PIAPCIYRNTTPIWSDQNLTNLAHYVESGCMLAYVRSATVGQS----VQLSNCQPYR 107
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: A0A2T1EHH2_9CHRO (Ergothioneine biosynthesis protein EgtC n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A2T1EHH2_9CHRO) HSP 1 Score: 76.3 bits (186), Expect = 2.250e-14 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPFK 333
+G SIP+D +++KPEHSL+ QS + P L+ + VN DG G+ WY+P+ D + K P W+ NL ++ ++VES + +VR+A G A V+ N PFK
Sbjct: 8 IGSSIPLDYILSKPEHSLIVQS----YQP--LEMNSGVVNADGFGIGWYHPEK-DTEPFIYKNVIPIWNDVNLSSLGRYVESSCILGYVRSATTGQA----VDMSNCQPFK 107
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Match: UPI00194EDF30 (class II glutamine amidotransferase n=1 Tax=Shimia biformata TaxID=1294299 RepID=UPI00194EDF30) HSP 1 Score: 75.1 bits (183), Expect = 5.730e-14 Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 1 MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNPKMIDDGGCVVKFPTPAWSSPNLLNIAKFVESGLVFAHVRAAFDGAALTGNVNHENTHPF 330
+G I ++ +ITKP HSL+ QS DA+ K +N DG G+AWY + D+ G + + PAWS PNL +A V SGL AHVRA+ G A + N N HPF
Sbjct: 8 LGKPIFLEEVITKPAHSLIIQSHDAT-------KAKTAINADGFGIAWYGER--DEPG-LYRDIYPAWSDPNLRALAHQVRSGLFLAHVRAS-TGTATSRN----NCHPF 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153235.3513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig153235.3513.1 >prot_H-elongata_contig153235.3513.1 ID=prot_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MGPSIPMDVLITKPEHSLVFQSRDASFHPGCLDKRNIRVNCDGVGVAWYNback to top mRNA from alignment at H-elongata_contig153235:218..1120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig153235.3513.1 ID=mRNA_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=903bp|location=Sequence derived from alignment at H-elongata_contig153235:218..1120- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig153235:218..1120- >mRNA_H-elongata_contig153235.3513.1 ID=mRNA_H-elongata_contig153235.3513.1|Name=mRNA_H-elongata_contig153235.3513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig153235:218..1120- (Himanthalia elongata Himel1 dioecious)back to top |