mRNA_H-elongata_contig153189.3510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig153189.3510.1
Unique NamemRNA_H-elongata_contig153189.3510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.110e-21
Identity = 47/75 (62.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            EVLRYRG+  ++P  NPL WW+   A+F LLREL  R+LC+PASSA+SE LFSKAGL  T QR+ L G RVAQ+V
Sbjct:  486 EVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLV 560          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.830e-17
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGA--SFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVA 216
            EVLRYR + K+D + +PL WWE      SF  LRELV RVLC+PA SASS+ +FSK GLV  ++R RL+G+RVA
Sbjct:  824 EVLRYRALDKIDSEADPLLWWEQEQQRWSFPFLRELVMRVLCVPACSASSKRVFSKTGLVDNSKRARLRGSRVA 897          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: A0A8D9E9A5_9HEMI (Zinc finger BED domain-containing protein 4 n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E9A5_9HEMI)

HSP 1 Score: 68.2 bits (165), Expect = 9.270e-12
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            E+ RY   P +D +E+PL WW+ +   +  L E++T+ LCI A+S  SE +FSK G + T +R+RL   R AQI+
Sbjct:  249 EIDRYLNEPIIDRREDPLAWWDISKKVYPTLHEMMTKRLCIQATSVPSERIFSKGGEILTAKRSRLTNKRFAQII 323          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: A0A6P7GHW3_DIAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7GHW3_DIAVI)

HSP 1 Score: 65.9 bits (159), Expect = 4.790e-11
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            E+ RY   P L   E+PLKWW    A F  L +LV + LCI A+S   E  FSKAGL+ T++R+R+K +++++++
Sbjct:  198 EIDRYIKEPILQRTEDPLKWWNDRQAIFPALVDLVKKRLCITATSVPCERQFSKAGLIMTDKRSRMKASKLSKVM 272          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: A0A1X7UCW0_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UCW0_AMPQE)

HSP 1 Score: 65.5 bits (158), Expect = 1.070e-10
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            E+ RY   P ++   NPL+WW+     F  L ++  + LCIP SS  SE LFSKAG + + +RNR+K   +  I+
Sbjct:  514 EIRRYFEEPNIERSFNPLEWWKANAIRFPRLSKIAAKYLCIPGSSVPSERLFSKAGQLVSERRNRIKPKNIDMIL 588          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: UPI001EEADC39 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEADC39)

HSP 1 Score: 65.5 bits (158), Expect = 1.070e-10
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    4 VLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            + +Y  +P LD K NPL++WE     F  L +L    LCIPA+S SSE LFSKAG+V+  +RNRL   ++  I+
Sbjct:  557 INQYIELPYLDRKANPLQFWEERKHIFPSLYKLAQMYLCIPATSVSSERLFSKAGMVANERRNRLLPKKLDSIL 630          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: UPI00106C4427 (zinc finger BED domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C4427)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-10
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            E+ RY   P +D  ++PL+WW+     F LL + V R L IPASSA +E LFSKAG + T +R  LK ++   +V
Sbjct:  282 EIARYLQFPTIDGDDDPLQWWKFHENDFPLLSQYVRRYLAIPASSAPTERLFSKAGQIVTAKRVNLKPSQANMLV 356          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: A0A8J2QTV3_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2QTV3_9NEOP)

HSP 1 Score: 65.1 bits (157), Expect = 1.470e-10
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    4 VLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            V +Y  +P LD K +PL++W      F  L E+  + LCIPASS  SE LFSKAG++  ++RNRL   ++ QI+
Sbjct:  548 VKQYIELPYLDRKCDPLQFWNDKKCLFPRLSEIAQKYLCIPASSVPSERLFSKAGILCNDRRNRLAPKKIDQIL 621          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: UPI0018D0C22E (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0C22E)

HSP 1 Score: 65.1 bits (157), Expect = 1.470e-10
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            +V +Y  +P LD K +PLK+WE    +   L ++  + LCIPA+S  SE +FSKAGL+   +RNRL+  +V QI+
Sbjct:  563 KVKQYVELPYLDRKADPLKFWELRKVTNNGLYKIALKYLCIPATSVPSERVFSKAGLLCNQRRNRLESKKVDQIL 637          
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Match: UPI0018E2124D (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Acanthomorphata TaxID=123368 RepID=UPI0018E2124D)

HSP 1 Score: 64.3 bits (155), Expect = 2.710e-10
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 EVLRYRGMPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGLVSTNQRNRLKGTRVAQIV 225
            E+  Y   P +D +++PL WW     +F  L  L  + LCIPA+SA SE LFS +G + T QR  LK TRV  +V
Sbjct:  416 ELDNYLITPSIDGEQDPLAWWRVHNVNFPWLSRLARKYLCIPATSAPSERLFSASGNIVTCQRASLKPTRVDMLV 490          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig153189.3510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE1.110e-2162.67Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
D8LDT4_ECTSI1.830e-1758.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A8D9E9A5_9HEMI9.270e-1242.67Zinc finger BED domain-containing protein 4 n=2 Ta... [more]
A0A6P7GHW3_DIAVI4.790e-1142.67zinc finger BED domain-containing protein 1-like n... [more]
A0A1X7UCW0_AMPQE1.070e-1040.00BED-type domain-containing protein n=1 Tax=Amphime... [more]
UPI001EEADC391.070e-1045.95E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homalodi... [more]
UPI00106C44271.320e-1044.00zinc finger BED domain-containing protein 1-like n... [more]
A0A8J2QTV3_9NEOP1.470e-1044.59(African queen) hypothetical protein n=1 Tax=Danau... [more]
UPI0018D0C22E1.470e-1044.00E3 SUMO-protein ligase ZBED1-like n=1 Tax=Plutella... [more]
UPI0018E2124D2.710e-1044.00E3 SUMO-protein ligase ZBED1-like n=3 Tax=Acanthom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig153189contigH-elongata_contig153189:372..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.0
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog7029.ACYPI50869-PA
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs39TTD@33154,3BCXB@33208,3DFW4@33213,3SQVQ@50557,421YH@6656,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.318064-CDS-H-elongata_contig153189:371..5751622929905.318064-CDS-H-elongata_contig153189:371..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153189 372..575 -
1691679202.5977626-CDS-H-elongata_contig153189:371..5751691679202.5977626-CDS-H-elongata_contig153189:371..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig153189 372..575 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929905.3367937-UTR-H-elongata_contig153189:575..5961622929905.3367937-UTR-H-elongata_contig153189:575..596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153189 576..596 -
1691679202.614028-UTR-H-elongata_contig153189:575..5961691679202.614028-UTR-H-elongata_contig153189:575..596Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig153189 576..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig153189.3510.1prot_H-elongata_contig153189.3510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig153189 372..575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig153189.3510.1

>prot_H-elongata_contig153189.3510.1 ID=prot_H-elongata_contig153189.3510.1|Name=mRNA_H-elongata_contig153189.3510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MPKLDPKENPLKWWETTGASFLLLRELVTRVLCIPASSASSECLFSKAGL
VSTNQRNRLKGTRVAQIV
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mRNA from alignment at H-elongata_contig153189:372..596-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig153189.3510.1 ID=mRNA_H-elongata_contig153189.3510.1|Name=mRNA_H-elongata_contig153189.3510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig153189:372..596- (Himanthalia elongata Himel1 dioecious)
GAGGTGCTCAGGTACCGCGGTATGCCCAAGCTTGACCCGAAGGAGAATCC GCTCAAGTGGTGGGAGACAACGGGCGCGAGCTTCCTTCTTCTCCGTGAGC TGGTTACACGTGTCCTCTGTATCCCGGCTTCGTCCGCGTCGTCGGAGTGC CTGTTCTCCAAGGCAGGGCTCGTTTCGACAAACCAGCGGAACAGGCTGAA GGGAACAAGGGTGGCCCAGATAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig153189:372..596-

>mRNA_H-elongata_contig153189.3510.1 ID=mRNA_H-elongata_contig153189.3510.1|Name=mRNA_H-elongata_contig153189.3510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig153189:372..596- (Himanthalia elongata Himel1 dioecious)
ATGCCCAAGCTTGACCCGAAGGAGAATCCGCTCAAGTGGTGGGAGACAAC
GGGCGCGAGCTTCCTTCTTCTCCGTGAGCTGGTTACACGTGTCCTCTGTA
TCCCGGCTTCGTCCGCGTCGTCGGAGTGCCTGTTCTCCAAGGCAGGGCTC
GTTTCGACAAACCAGCGGAACAGGCTGAAGGGAACAAGGGTGGCCCAGAT
AGTGATGCCCAAGCTTGACCCGAAGGAGAATCCGCTCAAGTGGTGGGAGA
CAACGGGCGCGAGCTTCCTTCTTCTCCGTGAGCTGGTTACACGTGTCCTC
TGTATCCCGGCTTCGTCCGCGTCGTCGGAGTGCCTGTTCTCCAAGGCAGG
GCTCGTTTCGACAAACCAGCGGAACAGGCTGAAGGGAACAAGGGTGGCCC
AGATAGTG
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