mRNA_H-elongata_contig152684.3481.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152684.3481.1
Unique NamemRNA_H-elongata_contig152684.3481.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: D7FLF2_ECTSI (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.900e-45
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            PT+TSGAEGIVA ACHD+ADTVVTGIVGCAGLLPTVEAIK+KKTIALANKETLIAGGPAVLPLL+  GVDM+PADSEHSAIFQCLQ
Sbjct:  112 PTVTSGAEGIVATACHDDADTVVTGIVGCAGLLPTVEAIKRKKTIALANKETLIAGGPAVLPLLKEYGVDMVPADSEHSAIFQCLQ 197
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A835ZCZ6_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCZ6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.700e-38
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P + +G  GIVAAA HD+ DTVVTGIVGCAGLLPTVEAIKK+KTIALANKETLIAGGP V+PL R  GVDMIPADSEHSAIFQCLQ
Sbjct:  111 PELAAGQAGIVAAASHDDCDTVVTGIVGCAGLLPTVEAIKKRKTIALANKETLIAGGPVVVPLCREYGVDMIPADSEHSAIFQCLQ 196
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A6V1P662_HETAK (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P662_HETAK)

HSP 1 Score: 128 bits (321), Expect = 3.130e-33
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P + +G EGI A A   +ADTVVTGIVGCAGLLPT+EAIK  KTIALANKETLIAGGP +LPLL  +GVDMIPADSEHSAIFQ LQ
Sbjct:  138 PEMGAGNEGICAVAAAQDADTVVTGIVGCAGLLPTIEAIKAGKTIALANKETLIAGGPIILPLLEEHGVDMIPADSEHSAIFQSLQ 223
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: B2KJ91_PHATR (1-deoxy-D-xylulose-5-phosphate reductoisomerase (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B2KJ91_PHATR)

HSP 1 Score: 124 bits (311), Expect = 4.160e-33
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P I SG EGIVAAA  D ADTVVTGIVG AGL PT+EAIK KK IALANKETLI+GGP + PL+   G++M+PADSEHSAIFQCLQ
Sbjct:  154 PLILSGQEGIVAAATVDTADTVVTGIVGAAGLEPTIEAIKMKKDIALANKETLISGGPVINPLVEKYGINMLPADSEHSAIFQCLQ 239
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A448Z184_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z184_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.050e-33
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            PTI  G EGI+AAA  D ADTVVTGIVG AGLLPT+EAIK KK IALANKETLI+GGP + PL++ +G++M+PADSEHSAIFQCLQ
Sbjct:  150 PTIMHGEEGILAAATIDTADTVVTGIVGSAGLLPTIEAIKLKKDIALANKETLISGGPVINPLVKEHGINMLPADSEHSAIFQCLQ 235
[Close]
BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A4D9CU67_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU67_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.330e-32
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P + +G EG++A A  D A+ VVTGIVGCAGLLPTVEAIK +KTIALANKETLI+GGPA++PLL+  GV++IPADSEHSAIFQ LQ
Sbjct:  136 PMLGAGQEGVIACATEDAANVVVTGIVGCAGLLPTVEAIKARKTIALANKETLISGGPAIVPLLKEYGVNVIPADSEHSAIFQSLQ 221
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A7S2BEC1_9STRA (1-deoxy-D-xylulose-5-phosphate reductoisomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEC1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.160e-32
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    7 ITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            +  GAEG+ A A  DEA  VVTGIVGCAGLLPT+EAIKKKK IALANKETLIAGGP +LPLL   GV M PADSEHSAIFQ LQ
Sbjct:   51 VMGGAEGVNAVATEDEAGVVVTGIVGCAGLLPTIEAIKKKKRIALANKETLIAGGPVILPLLEEYGVTMTPADSEHSAIFQALQ 134
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BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A7S1LQI9_ALECA (1-deoxy-D-xylulose-5-phosphate reductoisomerase (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LQI9_ALECA)

HSP 1 Score: 125 bits (313), Expect = 2.420e-32
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P +  G +G +A AC++E+ TVVTGIVGCAGL+PT+EAIK KK IALANKETLIAGGP + P+   +GV M+P DSEHSAIFQCLQ
Sbjct:   93 PVLLGGKDGQIAVACYEESKTVVTGIVGCAGLIPTIEAIKAKKDIALANKETLIAGGPVIAPMFEEHGVSMLPVDSEHSAIFQCLQ 178
[Close]
BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A086CHR4_9CHRO (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=2 Tax=Candidatus Atelocyanobacterium thalassa TaxID=713887 RepID=A0A086CHR4_9CHRO)

HSP 1 Score: 123 bits (309), Expect = 6.630e-32
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            P I +G +G++  AC+ + +++VTGIVGCAGLLPT+EAIK  K IALANKETLIAGGP VLPL+   GV ++PADSEHSAIFQCLQ
Sbjct:   76 PIIVAGDQGVIEVACYGDTESIVTGIVGCAGLLPTIEAIKAGKDIALANKETLIAGGPVVLPLIEKYGVKLLPADSEHSAIFQCLQ 161
[Close]
BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Match: A0A7C3KFI6_9CYAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3KFI6_9CYAN)

HSP 1 Score: 123 bits (309), Expect = 7.510e-32
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANKETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQ 258
            PT+ +G EGIV  A   EAD VVTGIVGCAGLLPT+ AIK  K IALANKETLIAGGP VLPL++ +G+ ++PADSEHSAIFQCLQ
Sbjct:   76 PTLLAGEEGIVEIARTPEADVVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVLPLIQEHGIKLLPADSEHSAIFQCLQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152684.3481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF2_ECTSI5.900e-4590.701-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A835ZCZ6_9STRA1.700e-3882.561-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A6V1P662_HETAK3.130e-3376.741-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
B2KJ91_PHATR4.160e-3374.421-deoxy-D-xylulose-5-phosphate reductoisomerase (F... [more]
A0A448Z184_9STRA8.050e-3374.421-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A4D9CU67_9STRA1.330e-3272.091-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S2BEC1_9STRA2.160e-3276.191-deoxy-D-xylulose-5-phosphate reductoisomerase n=... [more]
A0A7S1LQI9_ALECA2.420e-3267.441-deoxy-D-xylulose-5-phosphate reductoisomerase (F... [more]
A0A086CHR4_9CHRO6.630e-3267.441-deoxy-D-xylulose 5-phosphate reductoisomerase n=... [more]
A0A7C3KFI6_9CYAN7.510e-3272.091-deoxy-D-xylulose 5-phosphate reductoisomerase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152684contigH-elongata_contig152684:174..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D7FLF2
Preferred nameDXR
KEGG rclassRC01452
KEGG koko:K00099
KEGG ReactionR05688
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009987,GO:0016114,GO:0016491,GO:0016614,GO:0016616,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0030145,GO:0030604,GO:0032787,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0046490,GO:0046872,GO:0046914,GO:0048037,GO:0050661,GO:0050662,GO:0051483,GO:0051484,GO:0055114,GO:0070402,GO:0071704,GO:0090407,GO:0097159,GO:1901135,GO:1901265,GO:1901363,GO:1901576
EggNOG free text desc.1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
EggNOG OGs2QPJ7@2759,COG0020@1
EC1.1.1.267
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor
Ec32 orthologEc-12_007940.1
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929902.759574-CDS-H-elongata_contig152684:173..2461622929902.759574-CDS-H-elongata_contig152684:173..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152684 174..246 +
1691679201.6782522-CDS-H-elongata_contig152684:173..2461691679201.6782522-CDS-H-elongata_contig152684:173..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152684 174..246 +
1622929902.7838292-CDS-H-elongata_contig152684:480..6741622929902.7838292-CDS-H-elongata_contig152684:480..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152684 481..674 +
1691679201.690398-CDS-H-elongata_contig152684:480..6741691679201.690398-CDS-H-elongata_contig152684:480..674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152684 481..674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152684.3481.1prot_H-elongata_contig152684.3481.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152684 174..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152684.3481.1

>prot_H-elongata_contig152684.3481.1 ID=prot_H-elongata_contig152684.3481.1|Name=mRNA_H-elongata_contig152684.3481.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
PTITSGAEGIVAAACHDEADTVVTGIVGCAGLLPTVEAIKKKKTIALANK
ETLIAGGPAVLPLLRANGVDMIPADSEHSAIFQCLQVR*
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mRNA from alignment at H-elongata_contig152684:174..674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152684.3481.1 ID=mRNA_H-elongata_contig152684.3481.1|Name=mRNA_H-elongata_contig152684.3481.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig152684:174..674+ (Himanthalia elongata Himel1 dioecious)
CCCACCATTACCTCGGGCGCTGAGGGCATCGTTGCGGCAGCATGTCACGA
CGAGGCTGATACCGTTGTTACAGGTGAGTCAGGAGATCGCAGTTATTTTA
GGGCTCAACGGTAGGAGTACAGGAGCATTTTTTCTTGACACTAATTATCA
AGGCCTACATCAGCGTGCATGTGTTGCTTGGCAATATGGTTATACTGGGA
ATTACCGCTGTAGGAAACACGGGGTCACGAGCCTTTGACAACACGAGATT
CCTTACAAGCACGAAAGGCTGCTAACAAGGGATATTTTCACCTAAATTAA
TTCGAAGGTATTGTTGGGTGTGCGGGGTTGCTACCTACCGTCGAGGCAAT
CAAGAAGAAAAAAACAATCGCACTGGCAAATAAGGAAACTCTTATTGCGG
GAGGACCAGCTGTGCTACCACTTCTCAGAGCCAATGGAGTGGACATGATT
CCAGCTGATTCTGAGCACTCTGCCATCTTCCAGTGCCTCCAGGTAAGATA
A
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Coding sequence (CDS) from alignment at H-elongata_contig152684:174..674+

>mRNA_H-elongata_contig152684.3481.1 ID=mRNA_H-elongata_contig152684.3481.1|Name=mRNA_H-elongata_contig152684.3481.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig152684:174..674+ (Himanthalia elongata Himel1 dioecious)
CCCACCATTACCTCGGGCGCTGAGGGCATCGTTGCGGCAGCATGTCACGA
CGAGGCTGATACCGTTGTTACAGCCCACCATTACCTCGGGCGCTGAGGGC
ATCGTTGCGGCAGCATGTCACGACGAGGCTGATACCGTTGTTACAGGTAT
TGTTGGGTGTGCGGGGTTGCTACCTACCGTCGAGGCAATCAAGAAGAAAA
AAACAATCGCACTGGCAAATAAGGAAACTCTTATTGCGGGAGGACCAGCT
GTGCTACCACTTCTCAGAGCCAATGGAGTGGACATGATTCCAGCTGATTC
TGAGCACTCTGCCATCTTCCAGTGCCTCCAGGTAAGATAAGTATTGTTGG
GTGTGCGGGGTTGCTACCTACCGTCGAGGCAATCAAGAAGAAAAAAACAA
TCGCACTGGCAAATAAGGAAACTCTTATTGCGGGAGGACCAGCTGTGCTA
CCACTTCTCAGAGCCAATGGAGTGGACATGATTCCAGCTGATTCTGAGCA
CTCTGCCATCTTCCAGTGCCTCCAGGTAAGATAA
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