mRNA_H-elongata_contig152311.3456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig152311.3456.1
Unique NamemRNA_H-elongata_contig152311.3456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: D7G245_ECTSI (Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G245_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 4.830e-62
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            SIMLRFTDDTFD+HLQSTIGVDFKVKM+DAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRP+TFDNLSKWLEEVETYHPGRGREV++
Sbjct:   27 SIMLRFTDDTFDDHLQSTIGVDFKVKMVDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPETFDNLSKWLEEVETYHPGRGREVVK 123
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BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A835YPZ0_9STRA (Rab18, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ0_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.100e-55
Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            SIMLRFTDD+FD+ LQSTIGVDFKVKM++ G K+IKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDV RP+TFDNL+KWLEEVETYHPGRGR+V++
Sbjct:   25 SIMLRFTDDSFDDKLQSTIGVDFKVKMMEVGDKKIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVERPETFDNLNKWLEEVETYHPGRGRDVVK 121
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BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A067C8B0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8B0_SAPPC)

HSP 1 Score: 164 bits (414), Expect = 2.860e-49
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFTDDTFD+HLQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R +TF+NL  WL+EVE Y P  GR+V++
Sbjct:   27 SMLLRFTDDTFDDHLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVARKETFENLGTWLQEVEVYSPANGRDVVK 123
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A485LUC0_9STRA (Aste57867_25090 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LUC0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.540e-48
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFT+DTFD+HLQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL  WL+EV+ Y P  GR+V++
Sbjct:   27 SMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDTWLQEVQVYSPANGRDVVK 123
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A024TX33_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TX33_9STRA)

HSP 1 Score: 161 bits (408), Expect = 3.400e-48
Identity = 75/97 (77.32%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFT+DTFD+HLQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF NL  WL+EVE Y P  GR+V++
Sbjct:   44 SMLLRFTEDTFDDHLQSTIGVDFKVKMITVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFANLDTWLQEVEVYSPANGRDVVK 140
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: D0NMU9_PHYIT (Rab18 family GTPase, putative n=6 Tax=Oomycota TaxID=4762 RepID=D0NMU9_PHYIT)

HSP 1 Score: 160 bits (404), Expect = 7.180e-48
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFTDDTFD++LQSTIGVDFKVKM+   GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL  WL+EVE Y P  GR+V++
Sbjct:   22 SMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVK 118
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BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: K3WMM1_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WMM1_GLOUD)

HSP 1 Score: 160 bits (404), Expect = 7.400e-48
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFTDDTFD++LQSTIGVDFKVKM+   GKRIKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL  WL+EVE Y P  G++V++
Sbjct:   22 SMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGKDVVK 118
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: W2NT60_PHYPR (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2NT60_PHYPR)

HSP 1 Score: 160 bits (404), Expect = 7.860e-48
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFTDDTFD++LQSTIGVDFKVKM+   GK+IKMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDV R DTF+NL  WL+EVE Y P  GR+V++
Sbjct:   43 SMLLRFTDDTFDDNLQSTIGVDFKVKMMQVDGKKIKMTIWDTAGQERFRTLTSSYYRGAQGIVLVYDVARRDTFENLDLWLQEVEVYSPAGGRDVVK 139
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A7S2CPE8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPE8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.500e-47
Identity = 74/97 (76.29%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            SIMLRF DD FD+H+ STIGVDFKVKM++  GKR+KMTIWDTAGQERFRTLTSSYYRGAQGI+LVYDVTR DTF++L +WL+E+E Y PG GREV++
Sbjct:   45 SIMLRFCDDHFDQHIGSTIGVDFKVKMMNRRGKRVKMTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRADTFESLDQWLQELEVYCPGGGREVVK 141
[Close]
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Match: A0A7S1H2S8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2S8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.060e-47
Identity = 71/97 (73.20%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:    1 SIMLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLTSSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR 291
            S++LRFTDD+FDEH+QSTIGVDFKVK LD  GKR+K+TIWDTAGQERFRTLTSSYYRGA G+  VYDVTRPDTF+NL +WL+EV+ Y P  G  V++
Sbjct:   29 SMLLRFTDDSFDEHIQSTIGVDFKVKHLDVNGKRVKLTIWDTAGQERFRTLTSSYYRGAHGVCFVYDVTRPDTFENLDQWLKEVKLYAPNNGESVVK 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig152311.3456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G245_ECTSI4.830e-6294.85Rab18, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YPZ0_9STRA1.100e-5585.57Rab18, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A067C8B0_SAPPC2.860e-4977.32Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A485LUC0_9STRA1.540e-4876.29Aste57867_25090 protein n=2 Tax=Aphanomyces TaxID=... [more]
A0A024TX33_9STRA3.400e-4877.32Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
D0NMU9_PHYIT7.180e-4876.29Rab18 family GTPase, putative n=6 Tax=Oomycota Tax... [more]
K3WMM1_GLOUD7.400e-4876.29Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
W2NT60_PHYPR7.860e-4876.29Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A7S2CPE8_9STRA1.500e-4776.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1H2S8_9STRA2.060e-4773.20Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig152311contigH-elongata_contig152311:465..1405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.0
Seed ortholog evalue6.5e-47
Seed eggNOG ortholog2880.D7G245
Preferred nameRAB18
KEGG koko:K07910,ko:K07976,ko:K17506
GOsGO:0000166,GO:0001654,GO:0001775,GO:0001882,GO:0001883,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006913,GO:0006955,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008092,GO:0008150,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017022,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0023052,GO:0030141,GO:0030659,GO:0030667,GO:0030742,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032029,GO:0032036,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034389,GO:0035556,GO:0036094,GO:0036230,GO:0042119,GO:0042175,GO:0042579,GO:0043009,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060322,GO:0065007,GO:0071782,GO:0071786,GO:0071840,GO:0071944,GO:0080115,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099503,GO:1901265,GO:1901363
EggNOG free text desc.myosin XI tail binding
EggNOG OGsKOG0080@1,KOG0080@2759
EC3.1.3.16
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size291
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig152311.3456.1prot_H-elongata_contig152311.3456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig152311 465..1399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.526133-CDS-H-elongata_contig152311:464..5621622929900.526133-CDS-H-elongata_contig152311:464..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 465..562 -
1691679200.7175279-CDS-H-elongata_contig152311:464..5621691679200.7175279-CDS-H-elongata_contig152311:464..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 465..562 -
1622929900.5449493-CDS-H-elongata_contig152311:942..10631622929900.5449493-CDS-H-elongata_contig152311:942..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 943..1063 -
1691679200.7300925-CDS-H-elongata_contig152311:942..10631691679200.7300925-CDS-H-elongata_contig152311:942..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 943..1063 -
1622929900.563187-CDS-H-elongata_contig152311:1333..13991622929900.563187-CDS-H-elongata_contig152311:1333..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 1334..1399 -
1691679200.7386608-CDS-H-elongata_contig152311:1333..13991691679200.7386608-CDS-H-elongata_contig152311:1333..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig152311 1334..1399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929900.5752556-UTR-H-elongata_contig152311:1399..14051622929900.5752556-UTR-H-elongata_contig152311:1399..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152311 1400..1405 -
1691679200.7484663-UTR-H-elongata_contig152311:1399..14051691679200.7484663-UTR-H-elongata_contig152311:1399..1405Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig152311 1400..1405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig152311.3456.1

>prot_H-elongata_contig152311.3456.1 ID=prot_H-elongata_contig152311.3456.1|Name=mRNA_H-elongata_contig152311.3456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MLRFTDDTFDEHLQSTIGVDFKVKMLDAGGKRIKMTIWDTAGQERFRTLT
SSYYRGAQGIMLVYDVTRPDTFDNLSKWLEEVETYHPGRGREVMR
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mRNA from alignment at H-elongata_contig152311:465..1405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig152311.3456.1 ID=mRNA_H-elongata_contig152311.3456.1|Name=mRNA_H-elongata_contig152311.3456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at H-elongata_contig152311:465..1405- (Himanthalia elongata Himel1 dioecious)
AGCATCATGCTGCGGTTCACCGACGACACCTTCGACGAGCATTTGCAAAG
CACAATCGGGGTCGACTTTAAGGTGAGATAACACAGGGGGTACGTCTCTC
CCCGAGGAACGAGTACGTAGACCATTCCCACTCCCTATTCTTTCAAGATG
ATGCCATTTGCTGCACACAGTCCCTGTTTCATAACACCTCTGTCCATGTA
TCGCCTCTATTTCCATTGTCTGCGGTTGTAAAAGGGCTCACCGACTCCAA
CTCTCTGGGGGCGACTGGAATTCTCACTCGAGCACGCCTCTTTCTCTCTG
TCTGAACCCTCAAATATACTTGGGACGCCTCATTCTCGACAGGTTAAAAT
GCTTGACGCCGGCGGGAAGCGGATAAAGATGACGATATGGGACACCGCGG
GACAAGAGCGCTTCCGAACGCTCACGAGCTCGTACTACCGAGGGGCTCAG
GGGATTATGCTAGGTGACGAGCGTAGACAAAAAAAAAAACATGACGTGCG
TGGCACGAGAAGAACAGGGTGTCCAAAGCTTCCCCCCCCCCCATATTTTG
TGAGCGAGGGCTCCGAGCAAGCAATATAGTGAAACTCGGCCTGTGTAGTA
TTTTCGAGCAATATACCTTCCCCTCCTCTCGACGCGCCTTTCAGAAGCCT
CACCGATCGCACCCGCGTGTCAACTTAACCGTTTTCGAAGTTATGTTTGG
CGCGCGAATCAAGACGACCATGGAGGCTCACGTGAATCGAATATCGAGCA
CGGCCGCGCCCCTGAACCCACAAGTTATATGATTTTCTATCGTGTGTTCT
GCGCATTGTCCCCCGGTCGCCGAATACATTTTTATGGGTGAAGTGTATGA
CGTCACTCGTCCGGATACGTTCGACAACTTGTCCAAGTGGCTGGAAGAGG
TCGAGACCTACCACCCGGGAAGAGGTCGCGAGGTGATGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig152311:465..1405-

>mRNA_H-elongata_contig152311.3456.1 ID=mRNA_H-elongata_contig152311.3456.1|Name=mRNA_H-elongata_contig152311.3456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig152311:465..1405- (Himanthalia elongata Himel1 dioecious)
ATGCTGCGGTTCACCGACGACACCTTCGACGAGCATTTGCAAAGCACAAT
CGGGGTCGACTTTAAGATGCTGCGGTTCACCGACGACACCTTCGACGAGC
ATTTGCAAAGCACAATCGGGGTCGACTTTAAGGTTAAAATGCTTGACGCC
GGCGGGAAGCGGATAAAGATGACGATATGGGACACCGCGGGACAAGAGCG
CTTCCGAACGCTCACGAGCTCGTACTACCGAGGGGCTCAGGGGATTATGC
TAGGTTAAAATGCTTGACGCCGGCGGGAAGCGGATAAAGATGACGATATG
GGACACCGCGGGACAAGAGCGCTTCCGAACGCTCACGAGCTCGTACTACC
GAGGGGCTCAGGGGATTATGCTAGTGTATGACGTCACTCGTCCGGATACG
TTCGACAACTTGTCCAAGTGGCTGGAAGAGGTCGAGACCTACCACCCGGG
AAGAGGTCGCGAGGTGATGCGGTGTATGACGTCACTCGTCCGGATACGTT
CGACAACTTGTCCAAGTGGCTGGAAGAGGTCGAGACCTACCACCCGGGAA
GAGGTCGCGAGGTGATGCGG
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