mRNA_H-elongata_contig15202.3444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15202.3444.1
Unique NamemRNA_H-elongata_contig15202.3444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15202.3444.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.760e-112
Identity = 174/245 (71.02%), Postives = 214/245 (87.35%), Query Frame = 1 
Query:   22 NKVNRVGELKLALEEGARALAQSRSQLEAVRAESGAERTAQEEKARFEAHRPRRVPPAPYRFDIVANGVNIRSYRSASMIAQNLSVRAWMVLTQPCRPWCNGGPEEESTMYAGVWDALGFLPNNDPMFAREALDVTILLDQLDLSLTRGQYATILAIIMDNFAEPWAVCPPVIEWPRRDPEVSEGVCRDALKGRRTAQTVPVYARRLRLTVSEDEEAFFYAPNQGSLDHGRRDWVAERKATEARS 756
            N+VNRVG+LKL+L+E    L + RS+L +VR E+ AERTAQ EKARFEAHRP RVPPAP RFD+VA+GV IRSYRSAS++A++LS+RAWMV+  P RPWC GG  +ES M+ GVWD+LGFLPN DPMFA+EALDVT+L+D+LD SLTR QY+TI++I+MDNF EPW++CPPVIEWP+RDPEVS+GVCRD L+GRRTAQ+VPVYARRLRLTVSE+EEA+F+APN+  LDH RRDWV++R+A EA S
Sbjct:  754 NQVNRVGDLKLSLDERVETLKRVRSRLGSVRREANAERTAQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSENEEAYFFAPNEEPLDHHRRDWVSKRRAEEAAS 998
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BLAST of mRNA_H-elongata_contig15202.3444.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.030e-111
Identity = 173/243 (71.19%), Postives = 212/243 (87.24%), Query Frame = 1 
Query:   22 NKVNRVGELKLALEEGARALAQSRSQLEAVRAESGAERTAQEEKARFEAHRPRRVPPAPYRFDIVANGVNIRSYRSASMIAQNLSVRAWMVLTQPCRPWCNGGPEEESTMYAGVWDALGFLPNNDPMFAREALDVTILLDQLDLSLTRGQYATILAIIMDNFAEPWAVCPPVIEWPRRDPEVSEGVCRDALKGRRTAQTVPVYARRLRLTVSEDEEAFFYAPNQGSLDHGRRDWVAERKATEA 750
            N+VNRVG+LKL+L+E    L + RS+LE+VR E+ AERT Q EKARFEAHRP RVPPAP RFD+VA+GV IRSYRSAS++A+NLS+RAWMV+  P RPWC GG  +ES M+ GVWD+LGFLPN DPMFA+EALD+T+L+D+LD SLTR QY+TI++I+MDNF EPW++CPPVIEWP+RDPEVS+GVCRD L+GRRTAQ+VPVYARRLRLTVSEDEEA+F+APN+  LD  RRDWV++R+A EA
Sbjct: 1745 NQVNRVGDLKLSLDERVETLKRVRSRLESVRREANAERTVQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSEDEEAYFFAPNEEPLDRNRRDWVSKRRAEEA 1987
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15202.3444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI2.760e-11271.02Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE1.030e-11171.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15202contigH-elongata_contig15202:3543..6642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size756
Cds size756
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15202.3444.1prot_H-elongata_contig15202.3444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15202 3543..6642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.6178076-CDS-H-elongata_contig15202:3542..36831622929899.6178076-CDS-H-elongata_contig15202:3542..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 3543..3683 -
1691679200.4180148-CDS-H-elongata_contig15202:3542..36831691679200.4180148-CDS-H-elongata_contig15202:3542..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 3543..3683 -
1622929899.6280723-CDS-H-elongata_contig15202:4065..42691622929899.6280723-CDS-H-elongata_contig15202:4065..4269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 4066..4269 -
1691679200.4260542-CDS-H-elongata_contig15202:4065..42691691679200.4260542-CDS-H-elongata_contig15202:4065..4269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 4066..4269 -
1622929899.637771-CDS-H-elongata_contig15202:4994..51351622929899.637771-CDS-H-elongata_contig15202:4994..5135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 4995..5135 -
1691679200.4341776-CDS-H-elongata_contig15202:4994..51351691679200.4341776-CDS-H-elongata_contig15202:4994..5135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 4995..5135 -
1622929899.6467535-CDS-H-elongata_contig15202:5590..56781622929899.6467535-CDS-H-elongata_contig15202:5590..5678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 5591..5678 -
1691679200.4423175-CDS-H-elongata_contig15202:5590..56781691679200.4423175-CDS-H-elongata_contig15202:5590..5678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 5591..5678 -
1622929899.657021-CDS-H-elongata_contig15202:6460..66421622929899.657021-CDS-H-elongata_contig15202:6460..6642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 6461..6642 -
1691679200.4500103-CDS-H-elongata_contig15202:6460..66421691679200.4500103-CDS-H-elongata_contig15202:6460..6642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15202 6461..6642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15202.3444.1

>prot_H-elongata_contig15202.3444.1 ID=prot_H-elongata_contig15202.3444.1|Name=mRNA_H-elongata_contig15202.3444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MNFDSATNKVNRVGELKLALEEGARALAQSRSQLEAVRAESGAERTAQEE
KARFEAHRPRRVPPAPYRFDIVANGVNIRSYRSASMIAQNLSVRAWMVLT
QPCRPWCNGGPEEESTMYAGVWDALGFLPNNDPMFAREALDVTILLDQLD
LSLTRGQYATILAIIMDNFAEPWAVCPPVIEWPRRDPEVSEGVCRDALKG
RRTAQTVPVYARRLRLTVSEDEEAFFYAPNQGSLDHGRRDWVAERKATEA
RS
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mRNA from alignment at H-elongata_contig15202:3543..6642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15202.3444.1 ID=mRNA_H-elongata_contig15202.3444.1|Name=mRNA_H-elongata_contig15202.3444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3100bp|location=Sequence derived from alignment at H-elongata_contig15202:3543..6642- (Himanthalia elongata Himel1 dioecious)
ATGAATTTTGATTCTGCTACGAATAAGGTTAACCGCGTCGGAGAGCTCAA
GCTCGCGCTGGAAGAAGGTGCCCGAGCCTTAGCCCAATCGCGGTCTCAGC
TTGAGGCCGTCAGGGCAGAGTCCGGAGCTGAACGGACGGCCCAGGAAGAA
AAGGCCCGGTTCGAAGCCCACCGACCCCGCAGGTTTGTTATATATTTATA
TATACTAAATGTATAACTCGTCGCCCGCGCAGTCTAGTCCAATTGTGGTA
AATACTGTGGTATAGTATAGTATAGTACAGCATAGTACAACTTGTGACGA
CTTTAATGAGAAGTGCGGGGTGAGATGGGTTGATCGACGGACACCGTTGC
AGCCCCCGTGGTTATTTGTATCTTGGCGTAAATGGTATGGTATGAAATGG
TATGGTTTGGTTACCTATATATGATGGTTTCGCGTGAGGAGGGGGTCACA
GAAGGTTTCGCGTTTACAGGCAATATATATATATATATATATATATGATA
ATTATGGGTAGACTTTTAAGATCGCGATCTGTAATTGTGTGTGTGAATGT
TTATGTGTGTATATGTGTTTATTTATTAAAGTGTAGATAACCGCTCAATC
CTCCCCTGTCACGTTAGTCATTCTAGACTATTCGCATTGATTCGCTCTGT
ATATGTATATTAAGTTTACACATAACCCCGCAAGCCGTGTGTCTCGTGTA
TGTATTAAATTGATCATATAATAATCGCGTATTACGGCCTTGTCATGCTA
GGCTATACGCATTGGCCGTAATACGGGGTTATTATATTATCAATTGTATT
TGTTTTTTTGTCTTCGGTGTTCTTCGCATAATCAATTATAGTGCGTATAC
CCTACAATATGCCCTATATTTACGTATAATTATCATACCTAGTCGCCAAT
CGCCATTCCGTTGTTCTTATCCTTCTCTATATCTTTCTCTATTTCCCTCT
CTTACTCATTCTAGAGTGCCCCCGGCCCCGTACCGTTTCGACATTGTGGC
CAACGGGGTCAACATCCGCTCCTATCGATCGGCAAGCATGATCGCGCAAA
ATGTGAGCAGGGTGGGGGGGGGGGATAGCTGTCGGTCACCTTGCCGGTGG
ACGTGACGTAGCGAAAATAATAATACAATAAATGGTTTGGACTGAATAAC
ACCACTGTATATAAAAATAAATACAGCTAGATCCCATTGTTTTACTCTGA
TTTTCCAGGAAAGTTCGCAGCCGCAGGCGTCGTGGAGACTCTCAAGAGGC
TCTTAATCGGCCGCATCAAACTTCGCCGGCAGCGGCGGTTCTAAGCTCTC
ACTCTCTTCGTTTCTCTCCCTCTGTCTTTGTCTTTGTCTTTGTATTTCTC
CCCCTCCTTCGCCCCCCCCCCCCAAGATCCCGATATTGTGTTATTTTTGT
TATGTGCCCGTTGCCACTTCTCCGACTTACAGAAGGCTTTTGTCATTTCG
TCCCCTGCCCCCTACCCCCCACCCTACCCCCCCCCTCTCAACACCGCCTC
CCTACAGTTGTCCGTCCGCGCGTGGATGGTGCTCACGCAACCCTGCCGTC
CCTGGTGCAACGGTGGCCCCGAAGAAGAGTCGACCATGTACGCCGGGGTC
TGGGACGCCCTCGGATTCCTGCCGAACAATGACCCCATGTTCGCGAGGGT
AAGAGAAGAGAGAAGCCTCAAGAGGTTGTCCGCGGTGATGGCCGTGAAGA
TGGTGGTGGTGGGTTCTGGTAGAAGCACCTGCGACACCCACACGTTTGGA
TTTTTGTAACGCTGCAGGCGTCTTGCATCTCCCTCGGGGATATGTTTTTT
CATCGAGAACCGGGTCTATTTTGTGGTCCGTTAAGCGACGTCGGCGGGTG
CGGTTGGGGGGGGGGGGGGGGGGGGGGAGTCTCTTTCTTTCACTCTTTTC
TTTTTCCATTTAAAAACAACTTCTTGTAACGAAAAACAAAATGAGTGCTC
TACATTAAACATGGCTTCTGGAAAGGAATTTCATACTAGATAATAGTCCG
AATATGTTCACTTACTTATATACCCCCACGTGTGACGATTTTGTGCTCAA
AGGTAGTAATGTACACATTTGAACCTGACGATAGTTGGTCCCCTTGATGG
CACCTCTCACGGCGCTAATAAGGTGTGGATGTTCGGAGGGTTGGAATGAG
TTCAAGTTTTTTTTTTAAATAAACCTTGGTTTCGCTACCCTTTTATCTAC
TTCGGTATATATTTTTAAAAAGTCTATTCATGTGGAAACCCCCTCCCCTG
CCCCACCCACACCCACACAGACGTCCCCTCGAGTACGAAATAACGCCTCC
CGTCCATTACTCTCCCTCCATTCCTCCCTATCCGTCCCCCTCCCCCTCCG
TTTTGTTCCTTTGAAAATCTCAGGAAGCCTTAGACGTGACCATCTTGCTG
GATCAGCTCGACCTCAGCCTCACGCGGGGACAGTACGCCACGATCCTCGC
TATCATCATGGACAACTTCGCCGAGCCATGGGCCGTGTGCCCCCCGGTGA
TCGAGTGGCCCAGACGAGACCCCGAGGTTTCGGAGGGTGTGTGCAGAGAC
GCCCTCAAAGGGCGTCGCACGGCTCAGGTGAGCTCCAAGAGGGATCAGGT
GTCCTAGTAGTTCTAAATTGAGAACGTTTTCGCTCGCAGAACATGGCCTC
AGTCTTTGTTGTCGATACTTCAGAGGCTGTGAACGGCATATTTTTCTTCT
TCTAATTTTTTTTTAATCTCTCCCCCAACCCCTCCCGCCTTTATTTTCTC
ATTTTTTCTCTATTTTCCTCATTTTTCCTTCATTTTTCTCATTTTTTCTC
CATTTTTCTCCTTTCGTTTTAAAATTGCGAGCGATTCATTTCGTGGCCAC
GTGCAAATATATCATCTTTCTATTTAATTTCCTTTTGCTACCCCTCTGCC
ATACCCTCTCTCTCTCCCCCCCCCCCGGGGGACCAACGCCTGAAAAATTA
TTGTACAAGACCGTCCCCGTGTACGCGCGACGGCTGCGTCTGACGGTTTC
AGAAGACGAAGAGGCGTTCTTCTATGCCCCCAATCAGGGTTCCCTAGACC
ACGGCCGACGGGATTGGGTGGCTGAGAGGAAGGCAACGGAAGCGAGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig15202:3543..6642-

>mRNA_H-elongata_contig15202.3444.1 ID=mRNA_H-elongata_contig15202.3444.1|Name=mRNA_H-elongata_contig15202.3444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig15202:3543..6642- (Himanthalia elongata Himel1 dioecious)
ATGAATTTTGATTCTGCTACGAATAAGGTTAACCGCGTCGGAGAGCTCAA
GCTCGCGCTGGAAGAAGGTGCCCGAGCCTTAGCCCAATCGCGGTCTCAGC
TTGAGGCCGTCAGGGCAGAGTCCGGAGCTGAACGGACGGCCCAGGAAGAA
AAGGCCCGGTTCGAAGCCCACCGACCCCGCAGATGAATTTTGATTCTGCT
ACGAATAAGGTTAACCGCGTCGGAGAGCTCAAGCTCGCGCTGGAAGAAGG
TGCCCGAGCCTTAGCCCAATCGCGGTCTCAGCTTGAGGCCGTCAGGGCAG
AGTCCGGAGCTGAACGGACGGCCCAGGAAGAAAAGGCCCGGTTCGAAGCC
CACCGACCCCGCAGAGTGCCCCCGGCCCCGTACCGTTTCGACATTGTGGC
CAACGGGGTCAACATCCGCTCCTATCGATCGGCAAGCATGATCGCGCAAA
ATAGTGCCCCCGGCCCCGTACCGTTTCGACATTGTGGCCAACGGGGTCAA
CATCCGCTCCTATCGATCGGCAAGCATGATCGCGCAAAATTTGTCCGTCC
GCGCGTGGATGGTGCTCACGCAACCCTGCCGTCCCTGGTGCAACGGTGGC
CCCGAAGAAGAGTCGACCATGTACGCCGGGGTCTGGGACGCCCTCGGATT
CCTGCCGAACAATGACCCCATGTTCGCGAGGTTGTCCGTCCGCGCGTGGA
TGGTGCTCACGCAACCCTGCCGTCCCTGGTGCAACGGTGGCCCCGAAGAA
GAGTCGACCATGTACGCCGGGGTCTGGGACGCCCTCGGATTCCTGCCGAA
CAATGACCCCATGTTCGCGAGGGAAGCCTTAGACGTGACCATCTTGCTGG
ATCAGCTCGACCTCAGCCTCACGCGGGGACAGTACGCCACGATCCTCGCT
ATCATCATGGACAACTTCGCCGAGCCATGGGCCGTGTGCCCCCCGGTGAT
CGAGTGGCCCAGACGAGACCCCGAGGTTTCGGAGGGTGTGTGCAGAGACG
CCCTCAAAGGGCGTCGCACGGCTCAGGAAGCCTTAGACGTGACCATCTTG
CTGGATCAGCTCGACCTCAGCCTCACGCGGGGACAGTACGCCACGATCCT
CGCTATCATCATGGACAACTTCGCCGAGCCATGGGCCGTGTGCCCCCCGG
TGATCGAGTGGCCCAGACGAGACCCCGAGGTTTCGGAGGGTGTGTGCAGA
GACGCCCTCAAAGGGCGTCGCACGGCTCAGACCGTCCCCGTGTACGCGCG
ACGGCTGCGTCTGACGGTTTCAGAAGACGAAGAGGCGTTCTTCTATGCCC
CCAATCAGGGTTCCCTAGACCACGGCCGACGGGATTGGGTGGCTGAGAGG
AAGGCAACGGAAGCGAGGTCGACCGTCCCCGTGTACGCGCGACGGCTGCG
TCTGACGGTTTCAGAAGACGAAGAGGCGTTCTTCTATGCCCCCAATCAGG
GTTCCCTAGACCACGGCCGACGGGATTGGGTGGCTGAGAGGAAGGCAACG
GAAGCGAGGTCG
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