mRNA_H-elongata_contig151966.3438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151966.3438.1
Unique NamemRNA_H-elongata_contig151966.3438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151966.3438.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.590e-17
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:    3 YIWKYGMTDHVARCHNEDTLVEVGTEGAKKFKKDYTVSEMEKSKVLKKFKARKLRPR-RDTDNLPPGARRSVSGDGAVGSGVPGTR 257
            YIWKYGM++HV RCH ED LV  GT    +FK+ YT+SE EK+KVL+KFKA + R R +  + LP GA  S  G+G  G  + GTR
Sbjct:   13 YIWKYGMSEHVTRCHREDILVAAGTT-VDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTR 97
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BLAST of mRNA_H-elongata_contig151966.3438.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.380e-16
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 3 
Query:    3 YIWKYGMTDHVARCHNEDTLVEVGTEGAKKFKKDYTVSEMEKSKVLKKFKARKLRPR-RDTDNLPPGARRSVSGDGAVGSGVPGTRP---QGEQEE 278
            YIWKYGM++HV R H ED  V  GT G  KFK+ Y++SE EK+K L KFKA K R R +  + LPPGA     G+GA G  + GTR     GE++E
Sbjct:   13 YIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLEDMGEEDE 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151966.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNW9_ECTSI4.590e-1753.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE1.380e-1651.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151966contigH-elongata_contig151966:173..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size385
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151966.3438.1prot_H-elongata_contig151966.3438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151966 193..453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.0118043-UTR-H-elongata_contig151966:172..1921622929899.0118043-UTR-H-elongata_contig151966:172..192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151966 173..192 +
1691679200.2320287-UTR-H-elongata_contig151966:172..1921691679200.2320287-UTR-H-elongata_contig151966:172..192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151966 173..192 +
1622929899.0465446-UTR-H-elongata_contig151966:453..5571622929899.0465446-UTR-H-elongata_contig151966:453..557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151966 454..557 +
1691679200.2500827-UTR-H-elongata_contig151966:453..5571691679200.2500827-UTR-H-elongata_contig151966:453..557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig151966 454..557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929899.02418-CDS-H-elongata_contig151966:192..4531622929899.02418-CDS-H-elongata_contig151966:192..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151966 193..453 +
1691679200.2418444-CDS-H-elongata_contig151966:192..4531691679200.2418444-CDS-H-elongata_contig151966:192..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151966 193..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151966.3438.1

>prot_H-elongata_contig151966.3438.1 ID=prot_H-elongata_contig151966.3438.1|Name=mRNA_H-elongata_contig151966.3438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MTDHVARCHNEDTLVEVGTEGAKKFKKDYTVSEMEKSKVLKKFKARKLRP
RRDTDNLPPGARRSVSGDGAVGSGVPGTRPQGEQEE*
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mRNA from alignment at H-elongata_contig151966:173..557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151966.3438.1 ID=mRNA_H-elongata_contig151966.3438.1|Name=mRNA_H-elongata_contig151966.3438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=385bp|location=Sequence derived from alignment at H-elongata_contig151966:173..557+ (Himanthalia elongata Himel1 dioecious)
CGTACATATGGAAGTATGGTATGACCGACCACGTCGCCAGATGCCACAAC
GAGGACACACTAGTTGAGGTCGGCACAGAGGGGGCAAAGAAGTTCAAGAA
GGACTATACTGTGTCGGAAATGGAAAAGAGCAAGGTGCTGAAGAAGTTCA
AAGCCAGGAAGCTTCGCCCTCGTCGCGACACGGACAATCTCCCCCCTGGC
GCACGTAGGAGCGTGTCGGGGGATGGCGCTGTGGGAAGCGGTGTGCCGGG
CACCCGGCCCCAAGGAGAGCAGGAGGAGTAAGAGGAAGAGGGCGACGACG
ACGACGAAGAAGATGATGATGATGATGAAGACCAGGAGGATCAGGACGGG
GGGAAAGAAGACGAGGAGGCCGACGGACGGGAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig151966:173..557+

>mRNA_H-elongata_contig151966.3438.1 ID=mRNA_H-elongata_contig151966.3438.1|Name=mRNA_H-elongata_contig151966.3438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig151966:173..557+ (Himanthalia elongata Himel1 dioecious)
ATGACCGACCACGTCGCCAGATGCCACAACGAGGACACACTAGTTGAGGT
CGGCACAGAGGGGGCAAAGAAGTTCAAGAAGGACTATACTGTGTCGGAAA
TGGAAAAGAGCAAGGTGCTGAAGAAGTTCAAAGCCAGGAAGCTTCGCCCT
CGTCGCGACACGGACAATCTCCCCCCTGGCGCACGTAGGAGCGTGTCGGG
GGATGGCGCTGTGGGAAGCGGTGTGCCGGGCACCCGGCCCCAAGGAGAGC
AGGAGGAGTAAATGACCGACCACGTCGCCAGATGCCACAACGAGGACACA
CTAGTTGAGGTCGGCACAGAGGGGGCAAAGAAGTTCAAGAAGGACTATAC
TGTGTCGGAAATGGAAAAGAGCAAGGTGCTGAAGAAGTTCAAAGCCAGGA
AGCTTCGCCCTCGTCGCGACACGGACAATCTCCCCCCTGGCGCACGTAGG
AGCGTGTCGGGGGATGGCGCTGTGGGAAGCGGTGTGCCGGGCACCCGGCC
CCAAGGAGAGCAGGAGGAGTAA
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