mRNA_H-elongata_contig151933.3434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151933.3434.1
Unique NamemRNA_H-elongata_contig151933.3434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig151933.3434.1 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.670e-23
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1 
Query:   46 PSLVEWCANNADLLLPWISGEDGLAI-PGLAGLLHVLVLLSPSVTEAQRGYLVTIGFHSKLIRLFKWTIDTMRREHKH--RGRQGK--------PRAKAAEWPRYLTPCLLLLDLLAKPSN 375
            PSLV  C   A+ +LP  +G    A+ PGLAG+LHVL+LL+   TEAQR  LVT GFH KL+ LFK T+  +RR  +   +G  G              A+WP Y+TPCLLLLDL+AKPS+
Sbjct:  644 PSLVLSCIRRAEAMLPSEAGVSAAAVRPGLAGILHVLLLLATGATEAQRRALVTTGFHVKLLELFKTTMAELRRARRADMKGESGDCGXXXXXXXXXXTADWPEYMTPCLLLLDLVAKPSS 764
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151933.3434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6M1_9PHAE7.670e-2348.76UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151933contigH-elongata_contig151933:245..1158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929898.392964-CDS-H-elongata_contig151933:246..4171622929898.392964-CDS-H-elongata_contig151933:246..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151933 247..417 -
1691679200.1388571-CDS-H-elongata_contig151933:246..4171691679200.1388571-CDS-H-elongata_contig151933:246..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151933 247..417 -
1622929898.4059424-CDS-H-elongata_contig151933:936..11581622929898.4059424-CDS-H-elongata_contig151933:936..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151933 937..1158 -
1691679200.1487782-CDS-H-elongata_contig151933:936..11581691679200.1487782-CDS-H-elongata_contig151933:936..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151933 937..1158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151933.3434.1prot_H-elongata_contig151933.3434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151933 247..1158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151933.3434.1

>prot_H-elongata_contig151933.3434.1 ID=prot_H-elongata_contig151933.3434.1|Name=mRNA_H-elongata_contig151933.3434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
ETPSNVFLPNDSLDVPSLVEWCANNADLLLPWISGEDGLAIPGLAGLLHV
LVLLSPSVTEAQRGYLVTIGFHSKLIRLFKWTIDTMRREHKHRGRQGKPR
AKAAEWPRYLTPCLLLLDLLAKPSNALAPLV
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mRNA from alignment at H-elongata_contig151933:245..1158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151933.3434.1 ID=mRNA_H-elongata_contig151933.3434.1|Name=mRNA_H-elongata_contig151933.3434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=914bp|location=Sequence derived from alignment at H-elongata_contig151933:245..1158- (Himanthalia elongata Himel1 dioecious)
GAGACGCCATCCAACGTTTTTCTTCCAAACGATTCGCTGGATGTGCCCTC
GCTGGTGGAGTGGTGCGCCAATAACGCGGATTTATTGCTCCCATGGATTT
CGGGGGAGGACGGGCTGGCGATACCGGGGCTAGCCGGGTTGCTGCATGTC
TTGGTACTTCTGTCGCCGAGCGTGACGGAGGCGCAGAGGGGATACCTGGT
CACCATAGGTTTCCACTCTAAGGTAAAGGCGTGTTTGTCTGTTGCGCCGA
TGTGTTATGCAGGAGAGGTATTGAGTAGAAATTGAGAGAGCAAAAGGAAG
ACGGGCGGAAGGAATGTACTGGAGGCTTTCGCTTCATCGAACGTAAATGT
TTTTTGTTGGTATTTTTTTTAACTAGAGAGGCCAAACGTTATCGTGGTGT
CGAAATGATCTGGCCACCCAATTCTTGCTTCATCCACACCATCCACATAT
TTTATCTCCGTTTTCATCCCTTTCTTTTTTAATACTCAAGAGACGGAGGG
GTTAAATTATTGACGTTTACTTTTTCTTCCAAAATCTAAAAGTCCCCTTT
TTTTGTTAGTTCGAAGGCAGTTCTCGCAGCGTCAAGCATGATGCTGGCAG
GCTGGTTTTTGCCTCCTACCCTCTTTTCCTTCTTAAATCCTAAAACTTAA
ACTCATACTTAAACTTCTTCCGGGTTCGCCGCCTGCTCACGCTTCCCCGT
GTCTTGTTCATTGGATCTGTTTCCTTGCCGCTCTGAAATAGCTCATCCGG
CTCTTCAAGTGGACGATCGACACCATGCGTCGCGAGCACAAGCACCGTGG
CCGTCAGGGAAAGCCTCGCGCCAAGGCGGCGGAATGGCCACGATACCTGA
CTCCCTGTCTCTTGCTGCTTGACCTCCTTGCGAAGCCGTCCAACGCGCTC
GCGCCCCTCGTTGT
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Coding sequence (CDS) from alignment at H-elongata_contig151933:245..1158-

>mRNA_H-elongata_contig151933.3434.1 ID=mRNA_H-elongata_contig151933.3434.1|Name=mRNA_H-elongata_contig151933.3434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig151933:245..1158- (Himanthalia elongata Himel1 dioecious)
GAGACGCCATCCAACGTTTTTCTTCCAAACGATTCGCTGGATGTGCCCTC
GCTGGTGGAGTGGTGCGCCAATAACGCGGATTTATTGCTCCCATGGATTT
CGGGGGAGGACGGGCTGGCGATACCGGGGCTAGCCGGGTTGCTGCATGTC
TTGGTACTTCTGTCGCCGAGCGTGACGGAGGCGCAGAGGGGATACCTGGT
CACCATAGGTTTCCACTCTAAGGAGACGCCATCCAACGTTTTTCTTCCAA
ACGATTCGCTGGATGTGCCCTCGCTGGTGGAGTGGTGCGCCAATAACGCG
GATTTATTGCTCCCATGGATTTCGGGGGAGGACGGGCTGGCGATACCGGG
GCTAGCCGGGTTGCTGCATGTCTTGGTACTTCTGTCGCCGAGCGTGACGG
AGGCGCAGAGGGGATACCTGGTCACCATAGGTTTCCACTCTAAGCTCATC
CGGCTCTTCAAGTGGACGATCGACACCATGCGTCGCGAGCACAAGCACCG
TGGCCGTCAGGGAAAGCCTCGCGCCAAGGCGGCGGAATGGCCACGATACC
TGACTCCCTGTCTCTTGCTGCTTGACCTCCTTGCGAAGCCGTCCAACGCG
CTCGCGCCCCTCGTTCTCATCCGGCTCTTCAAGTGGACGATCGACACCAT
GCGTCGCGAGCACAAGCACCGTGGCCGTCAGGGAAAGCCTCGCGCCAAGG
CGGCGGAATGGCCACGATACCTGACTCCCTGTCTCTTGCTGCTTGACCTC
CTTGCGAAGCCGTCCAACGCGCTCGCGCCCCTCGTT
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