mRNA_H-elongata_contig151651.3418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig151651.3418.1
Unique NamemRNA_H-elongata_contig151651.3418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig151651.3418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig151651contigH-elongata_contig151651:221..1200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929897.0490487-CDS-H-elongata_contig151651:220..5411622929897.0490487-CDS-H-elongata_contig151651:220..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151651 221..541 -
1691679199.4530704-CDS-H-elongata_contig151651:220..5411691679199.4530704-CDS-H-elongata_contig151651:220..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151651 221..541 -
1622929897.0698032-CDS-H-elongata_contig151651:1122..12001622929897.0698032-CDS-H-elongata_contig151651:1122..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151651 1123..1200 -
1691679199.4625075-CDS-H-elongata_contig151651:1122..12001691679199.4625075-CDS-H-elongata_contig151651:1122..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig151651 1123..1200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig151651.3418.1prot_H-elongata_contig151651.3418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig151651 221..1200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig151651.3418.1

>prot_H-elongata_contig151651.3418.1 ID=prot_H-elongata_contig151651.3418.1|Name=mRNA_H-elongata_contig151651.3418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
LGHSRFEIRVVFANKTQLVLIGETQKAKVARGEDQVQDPTVPSISSRRAD
HHQRNINGPSRRLKGTSGNTQQLVVYTDWSVVCEDMVTFKAKAAAHVMAI
VLLACSAITESFCPSVPTRVALAAGELGDSEE*
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mRNA from alignment at H-elongata_contig151651:221..1200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig151651.3418.1 ID=mRNA_H-elongata_contig151651.3418.1|Name=mRNA_H-elongata_contig151651.3418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig151651:221..1200- (Himanthalia elongata Himel1 dioecious)
TTGGGGCATTCGAGATTCGAGATACGCGTTGTTTTTGCAAACAAAACGCA
GTTGGTTCTAATCGGAGAGACACAAAAGGTTTGCCCAACTGTACTCACTC
CTCGATCGCTACAATTATAATCAAAACACTCTCCATGTACGCTGTAGGAT
AAGCCAGACGATTCCTTTCTTTAGACACAAGTTCAAATACGGTTGATCCT
CTTCAGAACAAATACTCTACGCCGATTCCAGCACGCAGTGATTATTGCTT
ATTGTACATCCTTTACAATCTTTGGATACACATTCTAACCTGACGATAGT
TAGTGGCTTCGACTGCTCCTCTTAGGGTGCTAAGAATGTCACGATGTTCG
GAGGGTTTGAACGAGCAGTTTATAAACGAAAATTACAGCTGCAACAGTAG
GAGTATAGTATATGCCTATTTGATAGTATTAATAGTATTAATAGTATCAA
TAGTATAAATAGTAGCTAGCTGTAGATAATGCGTGATAAAAAAAATCGGT
CGACGAGATGTTCTTTTTGTAGAAAGTTCCCTTCGTGTTATGATTCAAAA
CAACCCAATCAGAGCTCTATCCTGTTGTTGTAGTATCTAAAATCAAACGA
TATTATTCGCTGAAACGACACTGCTGCTGCACAATCCGTTCCCAATAACC
CAACAAAAGGCCAAGGTAGCTCGCGGGGAGGATCAAGTCCAGGATCCAAC
CGTTCCATCCATTTCTTCACGGAGGGCGGATCATCACCAGAGAAATATTA
ACGGGCCTTCAAGGCGGCTAAAGGGCACATCGGGGAATACACAACAACTC
GTGGTATACACAGACTGGAGTGTTGTGTGTGAAGATATGGTGACGTTCAA
GGCGAAAGCGGCGGCACACGTCATGGCGATAGTGCTGCTGGCATGCTCCG
CCATAACGGAGTCCTTCTGCCCCTCGGTGCCTACTCGAGTAGCTCTAGCA
GCAGGTGAGCTGGGAGATTCTGAAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig151651:221..1200-

>mRNA_H-elongata_contig151651.3418.1 ID=mRNA_H-elongata_contig151651.3418.1|Name=mRNA_H-elongata_contig151651.3418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig151651:221..1200- (Himanthalia elongata Himel1 dioecious)
TTGGGGCATTCGAGATTCGAGATACGCGTTGTTTTTGCAAACAAAACGCA
GTTGGTTCTAATCGGAGAGACACAAAAGTTGGGGCATTCGAGATTCGAGA
TACGCGTTGTTTTTGCAAACAAAACGCAGTTGGTTCTAATCGGAGAGACA
CAAAAGGCCAAGGTAGCTCGCGGGGAGGATCAAGTCCAGGATCCAACCGT
TCCATCCATTTCTTCACGGAGGGCGGATCATCACCAGAGAAATATTAACG
GGCCTTCAAGGCGGCTAAAGGGCACATCGGGGAATACACAACAACTCGTG
GTATACACAGACTGGAGTGTTGTGTGTGAAGATATGGTGACGTTCAAGGC
GAAAGCGGCGGCACACGTCATGGCGATAGTGCTGCTGGCATGCTCCGCCA
TAACGGAGTCCTTCTGCCCCTCGGTGCCTACTCGAGTAGCTCTAGCAGCA
GGTGAGCTGGGAGATTCTGAAGAGTAGGCCAAGGTAGCTCGCGGGGAGGA
TCAAGTCCAGGATCCAACCGTTCCATCCATTTCTTCACGGAGGGCGGATC
ATCACCAGAGAAATATTAACGGGCCTTCAAGGCGGCTAAAGGGCACATCG
GGGAATACACAACAACTCGTGGTATACACAGACTGGAGTGTTGTGTGTGA
AGATATGGTGACGTTCAAGGCGAAAGCGGCGGCACACGTCATGGCGATAG
TGCTGCTGGCATGCTCCGCCATAACGGAGTCCTTCTGCCCCTCGGTGCCT
ACTCGAGTAGCTCTAGCAGCAGGTGAGCTGGGAGATTCTGAAGAGTAG
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