mRNA_H-elongata_contig15105.3393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15105.3393.1
Unique NamemRNA_H-elongata_contig15105.3393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.810e-27
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
             F T ++WCGKVYS GQV H+P+RL GL  MRRP   GELM+FLQ  NW+R  LPRMAEV+ P R  L+ H+ G++SRTKRVA N
Sbjct:  948 FFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAEN 1032          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.780e-26
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
             F T++ WCGKVYSGGQV H+P RL GL  MRRP   GELM+ LQ  NW+R  LPR+AEV+ P R++L++H+A +  RTKR+ASN
Sbjct:  776 FFDTKIKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASN 860          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.170e-20
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVASN 255
             F T++ WCGKVYSGGQV  +P+RL GLT MRRP   G+LM+FLQ   W+R  L R+AEV+ P R +L+ ++A +  +TK +A N
Sbjct:  601 FFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPN 685          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS)

HSP 1 Score: 57.0 bits (136), Expect = 8.490e-8
Identity = 21/68 (30.88%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQML 204
            +F   + WCGK+YSG  + H+P+R+  LT M  P+ + +L + +    W+R  +P    +I P ++++
Sbjct:   54 IFARELVWCGKIYSGNGIRHDPERIAALTSMPEPKTVKDLQQLMWAVGWMRTTIPDYPYIIEPLQEVV 121          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: H3H8C5_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8C5_PHYRM)

HSP 1 Score: 57.0 bits (136), Expect = 1.570e-7
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
            LF T   WCGK++SG  + H+P R+ GL  +  P    +L +FL  A W+R  +   + V+ P   +L+  +     RTKR+A+
Sbjct:  728 LFQTATKWCGKIFSGEGIAHDPARVSGLQSLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQ-QVGRTKRLAA 810          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.130e-7
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
            LF T   WCGK++SG  + H+P R+ GL  +  P    +L +FL  A W+R  +   + V+ P   +L+  +     RTKR+A+
Sbjct:  101 LFQTATKWCGKIFSGEGIAHDPARVSGLQPLPLPVTAADLQQFLCAAGWLRDSIMDYSRVMQPLHILLEAALQ-QVGRTKRLAA 183          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: W4F9Z7_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F9Z7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-7
Identity = 26/85 (30.59%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK-RVAS 252
             + T + WCG+  S   ++H+P+R+ GLT +  P    +L +F+   NW+R+ +P+   ++AP + +L+     + +R K R+AS
Sbjct:  914 FYATEIVWCGRRVSAAGISHDPERIAGLTGLSTPTTADQLQQFICALNWMRQSIPQYNPLVAPLQALLEVVCTAAGTRKKTRLAS 998          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A4Z8T2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8T2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.170e-7
Identity = 26/85 (30.59%), Postives = 50/85 (58.82%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK-RVAS 252
             + T + WCG+  S   ++H+P+R+ GLT +  P    +L +F+   NW+R+ +P+   ++AP + +L+     + +R K R+AS
Sbjct:  983 FYATEIVWCGRRVSAAGISHDPERIAGLTGLSTPTTADQLQQFICALNWMRQSIPQYNPLVAPLQALLEVVCTAAGTRKKTRLAS 1067          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A6A3L091_9STRA (RNA-directed DNA polymerase n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L091_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.030e-6
Identity = 27/80 (33.75%), Postives = 41/80 (51.25%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTK 240
            LF  ++ WCGK+ SG  + H+P+RL  L  +  P  +  L +FL   NW+R  L   A + AP  + L+  +     R K
Sbjct:  558 LFQPQVLWCGKMVSGTDIQHDPERLSALANLPPPPTVAALQQFLCAVNWVRDSLIDYARIAAPLYECLEQQMRVIGKRNK 637          
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Match: A0A2P4Y2Z2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y2Z2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-6
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 1
Query:    1 LFYTRMSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLPRMAEVIAPFRQMLKDHIAGSQSRTKRVAS 252
            LF     WCG+++SG  V H+P+RL GL  +  P    +L +FL    W+R  L   + V+ P    L + +     RTKR+A+
Sbjct:  132 LFRKEAKWCGRLFSGVGVRHDPERLSGLHQLPLPSTAADLQQFLCATGWMRDSLMDYSRVMQPLHDKL-EAVLKVVGRTKRLAA 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15105.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE3.810e-2761.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E0_9PHAE1.780e-2658.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE2.170e-2051.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0G4J2M7_PLABS8.490e-830.88Reverse transcriptase domain-containing protein n=... [more]
H3H8C5_PHYRM1.570e-734.52RNA-directed DNA polymerase n=1 Tax=Phytophthora r... [more]
A0A6A4BBJ8_9STRA2.130e-734.52Uncharacterized protein n=5 Tax=Phytophthora fraga... [more]
W4F9Z7_9STRA2.140e-730.59Reverse transcriptase domain-containing protein n=... [more]
A0A6A4Z8T2_9STRA2.170e-730.59Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A3L091_9STRA1.030e-633.75RNA-directed DNA polymerase n=6 Tax=Phytophthora T... [more]
A0A2P4Y2Z2_9STRA2.010e-634.52Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15105contigH-elongata_contig15105:6150..6404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog67593.Physo131280
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.8860836-CDS-H-elongata_contig15105:6149..63891622929893.8860836-CDS-H-elongata_contig15105:6149..6389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15105 6150..6389 -
1691679198.4316382-CDS-H-elongata_contig15105:6149..63891691679198.4316382-CDS-H-elongata_contig15105:6149..6389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15105 6150..6389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929893.9019494-UTR-H-elongata_contig15105:6389..64041622929893.9019494-UTR-H-elongata_contig15105:6389..6404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15105 6390..6404 -
1691679198.4432306-UTR-H-elongata_contig15105:6389..64041691679198.4432306-UTR-H-elongata_contig15105:6389..6404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15105 6390..6404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15105.3393.1prot_H-elongata_contig15105.3393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15105 6150..6389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15105.3393.1

>prot_H-elongata_contig15105.3393.1 ID=prot_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MSWCGKVYSGGQVTHNPQRLCGLTIMRRPRRMGELMRFLQTANWIRKFLP
RMAEVIAPFRQMLKDHIAGSQSRTKRVASN
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mRNA from alignment at H-elongata_contig15105:6150..6404-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15105.3393.1 ID=mRNA_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig15105:6150..6404- (Himanthalia elongata Himel1 dioecious)
TTATTTTATACCCGGATGAGTTGGTGTGGCAAGGTTTATTCTGGTGGGCA GGTGACGCATAATCCGCAGCGATTATGTGGGTTAACGATCATGCGACGCC CGCGGAGGATGGGGGAGCTAATGCGATTTCTGCAAACGGCTAACTGGATA CGGAAATTTTTGCCGCGCATGGCTGAAGTGATCGCACCCTTTCGTCAGAT GTTAAAAGATCATATTGCGGGTAGTCAAAGTCGTACTAAGCGGGTTGCCT CGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig15105:6150..6404-

>mRNA_H-elongata_contig15105.3393.1 ID=mRNA_H-elongata_contig15105.3393.1|Name=mRNA_H-elongata_contig15105.3393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig15105:6150..6404- (Himanthalia elongata Himel1 dioecious)
ATGAGTTGGTGTGGCAAGGTTTATTCTGGTGGGCAGGTGACGCATAATCC
GCAGCGATTATGTGGGTTAACGATCATGCGACGCCCGCGGAGGATGGGGG
AGCTAATGCGATTTCTGCAAACGGCTAACTGGATACGGAAATTTTTGCCG
CGCATGGCTGAAGTGATCGCACCCTTTCGTCAGATGTTAAAAGATCATAT
TGCGGGTAGTCAAAGTCGTACTAAGCGGGTTGCCTCGAACATGAGTTGGT
GTGGCAAGGTTTATTCTGGTGGGCAGGTGACGCATAATCCGCAGCGATTA
TGTGGGTTAACGATCATGCGACGCCCGCGGAGGATGGGGGAGCTAATGCG
ATTTCTGCAAACGGCTAACTGGATACGGAAATTTTTGCCGCGCATGGCTG
AAGTGATCGCACCCTTTCGTCAGATGTTAAAAGATCATATTGCGGGTAGT
CAAAGTCGTACTAAGCGGGTTGCCTCGAAC
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