mRNA_H-elongata_contig150389.3363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig150389.3363.1
Unique NamemRNA_H-elongata_contig150389.3363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A6H5J6M6_9PHAE (SHQ1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.190e-25
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            RRLPNREYLI  GS +ERR LLGLAD+LFAYAYDHR T GD TVES WTVAVLSPLLSWLE
Sbjct:  385 RRLPNREYLIEAGSAEERRVLLGLADILFAYAYDHRTTTGDATVESPWTVAVLSPLLSWLE 445
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: D8LCQ4_ECTSI (SHQ1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 9.400e-25
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:    1 RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            RRLPNREYLI  GS +ERR LLGLAD+LFAYAYDHR T GD TVES WTVAVLSPLLSWLE
Sbjct:  793 RRLPNREYLIEAGSAEERRVLLGLADILFAYAYDHRTTTGDATVESPWTVAVLSPLLSWLE 853
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A813C676_9DINO (Shq1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C676_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 5.960e-16
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 LPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            LP  EYL+  GS ++R A L +A VL +YAYD R+T G+P VES WT+  LSP LSWL+
Sbjct:    7 LPRTEYLLPDGSAEQRTAFLSMATVLLSYAYDSRLTAGEPNVESEWTICKLSPALSWLQ 65
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A7M5V8H0_9CNID (Protein SHQ1 homolog n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V8H0_9CNID)

HSP 1 Score: 72.4 bits (176), Expect = 2.140e-13
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 LPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            LPN++YL++  SLDER+ LL L D+LFAY YDHR T G+ T ES WT+  LS  LSW +
Sbjct:  267 LPNKDYLLS--SLDERKCLLSLVDLLFAYCYDHRTTEGENTSESPWTICKLSSTLSWFD 323
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: UPI00138FA8E4 (protein SHQ1 homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FA8E4)

HSP 1 Score: 72.0 bits (175), Expect = 2.980e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            RRLPN+EY++  G  +++  LLGL D++FAYAY++R T G+ TVES WTV  LS  LSW E
Sbjct:  286 RRLPNKEYILDEG--EQKSLLLGLVDIMFAYAYNYRTTEGENTVESAWTVNKLSATLSWFE 344
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: UPI001B8885B3 (protein SHQ1 homolog n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8885B3)

HSP 1 Score: 71.2 bits (173), Expect = 5.560e-13
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    7 LPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            LPN+EYLI  G L      LGL D++FAYAY+HR+T G+  VESGWT+  L   LSWLE
Sbjct:  162 LPNKEYLIEKGDLQP--VYLGLVDIVFAYAYNHRVTEGENNVESGWTICKLCATLSWLE 218
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A0M0K177_9EUKA (Protein shq1-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K177_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 7.550e-13
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 LPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            LP +E+L+   S + RRAL GL D+LFAYAYD R T G+PTVESGWTV  +S  L WL+
Sbjct:  311 LPRKEFLLD--SAERRRALCGLIDLLFAYAYDIRTTEGEPTVESGWTVRRVSATLGWLD 367
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A7S1ZHE9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHE9_TRICV)

HSP 1 Score: 67.4 bits (163), Expect = 9.920e-13
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   52 RRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            R  LL L DVL+ YAYDHR T G+PTVES WT ++LSP LSW E
Sbjct:   60 RSLLLSLLDVLYGYAYDHRTTSGEPTVESSWTASILSPTLSWFE 103
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: B3RUZ8_TRIAD (Protein SHQ1 homolog (Fragment) n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RUZ8_TRIAD)

HSP 1 Score: 70.1 bits (170), Expect = 9.960e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            R LPN+EYL+    L++ + LLGL D++FAYAY++R T G+ TVES WT+  +S  LSWLE
Sbjct:  181 RELPNKEYLLD--KLEDYQLLLGLIDIIFAYAYNYRTTEGENTVESAWTICKISSSLSWLE 239
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BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Match: A0A433D224_9FUNG (SHQ1 protein-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D224_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTVAVLSPLLSWLE 183
            R LPN+EYLI     +E+   LGL D+LFAY+Y+HR+T GD TVES WT+  LSP +S LE
Sbjct:  301 RGLPNKEYLIQ----NEKSIYLGLVDILFAYSYNHRITEGDNTVESAWTIGKLSPTISCLE 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig150389.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6M6_9PHAE9.190e-2583.61SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCQ4_ECTSI9.400e-2583.61SHQ1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A813C676_9DINO5.960e-1655.93Shq1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7M5V8H0_9CNID2.140e-1357.63Protein SHQ1 homolog n=1 Tax=Clytia hemisphaerica ... [more]
UPI00138FA8E42.980e-1355.74protein SHQ1 homolog n=1 Tax=Nematostella vectensi... [more]
UPI001B8885B35.560e-1357.63protein SHQ1 homolog n=1 Tax=Gigantopelta aegis Ta... [more]
A0A0M0K177_9EUKA7.550e-1359.32Protein shq1-like protein n=1 Tax=Chrysochromulina... [more]
A0A7S1ZHE9_TRICV9.920e-1365.91Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B3RUZ8_TRIAD9.960e-1354.10Protein SHQ1 homolog (Fragment) n=1 Tax=Trichoplax... [more]
A0A433D224_9FUNG1.030e-1257.38SHQ1 protein-domain-containing protein n=2 Tax=Jim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig150389contigH-elongata_contig150389:855..1037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog2880.D8LCQ4
Preferred nameSHQ1
KEGG koko:K08597,ko:K14764
GOsGO:0000491,GO:0000493,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051082,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090069,GO:0090071,GO:0090304,GO:1901360,GO:2000232,GO:2000233
EggNOG free text desc.box H/ACA snoRNP assembly
EggNOG OGsKOG3247@1,KOG3247@2759
EC3.4.22.68
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.5203283-CDS-H-elongata_contig150389:854..10371622929890.5203283-CDS-H-elongata_contig150389:854..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150389 855..1037 +
1691679196.927208-CDS-H-elongata_contig150389:854..10371691679196.927208-CDS-H-elongata_contig150389:854..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig150389 855..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig150389.3363.1prot_H-elongata_contig150389.3363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig150389 855..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig150389.3363.1

>prot_H-elongata_contig150389.3363.1 ID=prot_H-elongata_contig150389.3363.1|Name=mRNA_H-elongata_contig150389.3363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
RRLPNREYLITPGSLDERRALLGLADVLFAYAYDHRMTGGDPTVESGWTV
AVLSPLLSWLE
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mRNA from alignment at H-elongata_contig150389:855..1037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig150389.3363.1 ID=mRNA_H-elongata_contig150389.3363.1|Name=mRNA_H-elongata_contig150389.3363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig150389:855..1037+ (Himanthalia elongata Himel1 dioecious)
AGGCGCCTCCCCAACCGGGAGTATCTTATTACTCCTGGGAGTTTGGATGA
GAGACGAGCGTTGCTCGGCTTGGCAGACGTGCTATTCGCCTACGCGTACG
ATCACCGGATGACGGGGGGCGACCCCACCGTCGAGAGCGGCTGGACGGTC
GCCGTCCTCAGCCCGCTGCTAAGCTGGCTAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig150389:855..1037+

>mRNA_H-elongata_contig150389.3363.1 ID=mRNA_H-elongata_contig150389.3363.1|Name=mRNA_H-elongata_contig150389.3363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig150389:855..1037+ (Himanthalia elongata Himel1 dioecious)
AGGCGCCTCCCCAACCGGGAGTATCTTATTACTCCTGGGAGTTTGGATGA
GAGACGAGCGTTGCTCGGCTTGGCAGACGTGCTATTCGCCTACGCGTACG
ATCACCGGATGACGGGGGGCGACCCCACCGTCGAGAGCGGCTGGACGGTC
GCCGTCCTCAGCCCGCTGCTAAGCTGGCTAGAGAGGCGCCTCCCCAACCG
GGAGTATCTTATTACTCCTGGGAGTTTGGATGAGAGACGAGCGTTGCTCG
GCTTGGCAGACGTGCTATTCGCCTACGCGTACGATCACCGGATGACGGGG
GGCGACCCCACCGTCGAGAGCGGCTGGACGGTCGCCGTCCTCAGCCCGCT
GCTAAGCTGGCTAGAG
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