mRNA_H-elongata_contig15029.3361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15029.3361.1
Unique NamemRNA_H-elongata_contig15029.3361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.100e-30
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
            DPL+WW+V+  DFP+LA L RR LAIPATQAES+RLFSCAGNIVTK RN LAP+TVEL VLLRHSWKIV
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 290          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.940e-24
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   28 GVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
              DFP+LA L RR LAIPATQA+S+RLFSCAGNIVTK RN LAP+TVEL VLLRHSWKIV
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 210          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.360e-14
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    4 PLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHS 195
            PL WW+VK  ++P LA L RR L IPA QA+S+R+FS AG +VTKTR ++ P  V L V LR++
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8V9R7_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8V9R7_NOTFU)

HSP 1 Score: 73.9 bits (180), Expect = 2.890e-14
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
            DPL WW+V  V+FPN++ L R+ L IPAT + S+RLFS  GN+VT  R+ L P++V + V L  + K
Sbjct:  190 DPLLWWKVHTVNFPNISRLARKNLCIPATSSASERLFSTGGNVVTCLRSSLKPTSVNMLVFLTKNLK 256          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8A617_NOTFU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=3 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8A617_NOTFU)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-13
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
            DPL WW+V  V+FPN++ L R+ L IPAT + S+RLFS  GN+VT  R+ L P++V + V L  + K
Sbjct:  220 DPLLWWKVHTVNFPNISRLARKNLCIPATSSASERLFSTGGNVVTCLRSFLKPTSVNMLVFLTKNLK 286          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-13
Identity = 35/69 (50.72%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKIV 207
            +PL+ W+ K +++P LA L RR LAIP++QA+S+R+FS AG  VT TR++L    VEL V LR+ W +V
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVV 550          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A8C1IN65_CYPCA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1IN65_CYPCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-13
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWKI 204
            +PL WW+V  V+FPN++ L ++ L +PAT   S+R+FS AGN+VT  R+ L P+TV + V L  + K+
Sbjct:  291 NPLTWWKVHEVNFPNISRLVKKYLCVPATSTPSERVFSAAGNVVTCQRSLLKPATVNMLVFLTKNLKV 358          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: UPI002013FBC1 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013FBC1)

HSP 1 Score: 73.2 bits (178), Expect = 1.610e-13
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLL 186
            DPL WW+V  + +P L I+ R+ L +PAT A S+RLFS  GNIVT TR+ L P+ V + V L
Sbjct:  440 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 501          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A1A8M8J6_9TELE (BED-type domain-containing protein n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8M8J6_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 1.640e-13
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLLRHSWK 201
            DPL WW+V  V+FPN++ L R+ L IPAT + S+RLFS  GN+VT  R+ L P++V + V L  + K
Sbjct:  588 DPLLWWKVHTVNFPNISRLARKYLCIPATSSASERLFSTGGNVVTCLRSSLKPTSVNMLVFLTKNLK 654          
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Match: A0A6P6NAP0_CARAU (zinc finger BED domain-containing protein 1-like n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A6P6NAP0_CARAU)

HSP 1 Score: 73.2 bits (178), Expect = 1.640e-13
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNKLAPSTVELFVLL 186
            DPL WW+V  + +P L I+ R+ L +PAT A S+RLFS  GNIVT TR+ L P+ V + V L
Sbjct:  599 DPLAWWRVHKISYPQLCIMARKYLCVPATSAPSERLFSTGGNIVTCTRSSLKPAKVNILVFL 660          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15029.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.100e-3079.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.940e-2480.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.360e-1454.69Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A1A8V9R7_NOTFU2.890e-1449.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A1A8A617_NOTFU1.090e-1349.25Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
D8LCS5_ECTSI1.190e-1350.72Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A8C1IN65_CYPCA1.270e-1345.59Dimer_Tnp_hAT domain-containing protein n=1 Tax=Cy... [more]
UPI002013FBC11.610e-1351.61E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobr... [more]
A0A1A8M8J6_9TELE1.640e-1349.25BED-type domain-containing protein n=1 Tax=Nothobr... [more]
A0A6P6NAP0_CARAU1.640e-1351.61zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15029contigH-elongata_contig15029:7541..7747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929890.0286782-CDS-H-elongata_contig15029:7540..77471622929890.0286782-CDS-H-elongata_contig15029:7540..7747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15029 7541..7747 +
1691679196.8822896-CDS-H-elongata_contig15029:7540..77471691679196.8822896-CDS-H-elongata_contig15029:7540..7747Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15029 7541..7747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15029.3361.1prot_H-elongata_contig15029.3361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15029 7541..7747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15029.3361.1

>prot_H-elongata_contig15029.3361.1 ID=prot_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
DPLNWWQVKGVDFPNLAILTRRELAIPATQAESDRLFSCAGNIVTKTRNK
LAPSTVELFVLLRHSWKIV
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mRNA from alignment at H-elongata_contig15029:7541..7747+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15029.3361.1 ID=mRNA_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig15029:7541..7747+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGAACTGGTGGCAGGTAAAGGGCGTCGACTTCCCGAACTTGGC CATCCTCACCCGGCGTGAGCTCGCCATCCCCGCCACACAGGCGGAGTCGG ATCGCCTGTTCTCCTGCGCAGGGAACATCGTGACCAAGACTCGCAACAAG TTGGCTCCCAGCACCGTCGAGTTGTTTGTTCTCCTGCGCCACTCGTGGAA GATAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig15029:7541..7747+

>mRNA_H-elongata_contig15029.3361.1 ID=mRNA_H-elongata_contig15029.3361.1|Name=mRNA_H-elongata_contig15029.3361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig15029:7541..7747+ (Himanthalia elongata Himel1 dioecious)
GACCCCTTGAACTGGTGGCAGGTAAAGGGCGTCGACTTCCCGAACTTGGC
CATCCTCACCCGGCGTGAGCTCGCCATCCCCGCCACACAGGCGGAGTCGG
ATCGCCTGTTCTCCTGCGCAGGGAACATCGTGACCAAGACTCGCAACAAG
TTGGCTCCCAGCACCGTCGAGTTGTTTGTTCTCCTGCGCCACTCGTGGAA
GATAGTGGACCCCTTGAACTGGTGGCAGGTAAAGGGCGTCGACTTCCCGA
ACTTGGCCATCCTCACCCGGCGTGAGCTCGCCATCCCCGCCACACAGGCG
GAGTCGGATCGCCTGTTCTCCTGCGCAGGGAACATCGTGACCAAGACTCG
CAACAAGTTGGCTCCCAGCACCGTCGAGTTGTTTGTTCTCCTGCGCCACT
CGTGGAAGATAGTG
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