mRNA_H-elongata_contig15000.3347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15000.3347.1
Unique NamemRNA_H-elongata_contig15000.3347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15000.3347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15000contigH-elongata_contig15000:499..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15000.3347.1prot_H-elongata_contig15000.3347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15000 722..1111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.1786752-UTR-H-elongata_contig15000:498..7211622929888.1786752-UTR-H-elongata_contig15000:498..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 499..721 +
1691679196.1240563-UTR-H-elongata_contig15000:498..7211691679196.1240563-UTR-H-elongata_contig15000:498..721Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 499..721 +
1622929888.307839-UTR-H-elongata_contig15000:1111..11721622929888.307839-UTR-H-elongata_contig15000:1111..1172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 1112..1172 +
1691679196.138545-UTR-H-elongata_contig15000:1111..11721691679196.138545-UTR-H-elongata_contig15000:1111..1172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15000 1112..1172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929888.2956991-CDS-H-elongata_contig15000:721..11111622929888.2956991-CDS-H-elongata_contig15000:721..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 722..1111 +
1691679196.131181-CDS-H-elongata_contig15000:721..11111691679196.131181-CDS-H-elongata_contig15000:721..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15000 722..1111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15000.3347.1

>prot_H-elongata_contig15000.3347.1 ID=prot_H-elongata_contig15000.3347.1|Name=mRNA_H-elongata_contig15000.3347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MAMKSHSYFAANIKSSSACPGPLVPLSDMVRTFHVATASSFERTAALAVE
RTRRVCALAARRAGRPLLLSFLLSKSLSSWYLSQIRLFLVTLCFLSLSTL
PWFLPCCSCTGISFSRARRPPPIVDVHGE*
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mRNA from alignment at H-elongata_contig15000:499..1172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15000.3347.1 ID=mRNA_H-elongata_contig15000.3347.1|Name=mRNA_H-elongata_contig15000.3347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig15000:499..1172+ (Himanthalia elongata Himel1 dioecious)
TCTGTGTTTAAAAATCACCCTCACCTTCAGCAGCCCCGCACTGATGTGTT
CCGGCACAATGCCATCTGGGCCGAGTGCGCCAGCGATAGACTACCTGACA
GCCAGACCAACTCCGAGTATCTCGGACTTACCTCCATCACCATCGCAATG
ACCGTTGCAGTGCACTACATCACCAGCGGTTGGTGCTTGGATGGATGTCC
TTCCATCGCGGTGAGTCTCCTGTATGGCGATGAAGTCGCACTCGTACTTC
GCAGCGAACATCAAAAGCTCCTCCGCATGCCCCGGGCCGTTGGTCCCTCT
CTCGGACATGGTGCGGACGTTCCATGTGGCAACCGCCAGCTCCTTCGAAC
GTACTGCTGCTCTTGCCGTCGAGCGAACCAGACGGGTGTGTGCTCTGGCG
GCACGTCGAGCCGGCCGTCCTCTCCTCCTTAGCTTCCTTCTTTCCAAGTC
TCTCTCCTCTTGGTATCTATCCCAAATCCGCCTCTTTTTGGTTACTCTCT
GTTTCCTCTCTCTCTCCACCCTACCCTGGTTCCTGCCTTGTTGCTCCTGC
ACAGGGATCAGCTTTTCCCGTGCACGTCGACCTCCACCAATCGTCGACGT
GCACGGAGAATAATAGAAGCATATATCTAACGTTGAACTGTATATCAAAA
CACTGTAAGTCATTCTTTATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig15000:499..1172+

>mRNA_H-elongata_contig15000.3347.1 ID=mRNA_H-elongata_contig15000.3347.1|Name=mRNA_H-elongata_contig15000.3347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig15000:499..1172+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATGAAGTCGCACTCGTACTTCGCAGCGAACATCAAAAGCTCCTC
CGCATGCCCCGGGCCGTTGGTCCCTCTCTCGGACATGGTGCGGACGTTCC
ATGTGGCAACCGCCAGCTCCTTCGAACGTACTGCTGCTCTTGCCGTCGAG
CGAACCAGACGGGTGTGTGCTCTGGCGGCACGTCGAGCCGGCCGTCCTCT
CCTCCTTAGCTTCCTTCTTTCCAAGTCTCTCTCCTCTTGGTATCTATCCC
AAATCCGCCTCTTTTTGGTTACTCTCTGTTTCCTCTCTCTCTCCACCCTA
CCCTGGTTCCTGCCTTGTTGCTCCTGCACAGGGATCAGCTTTTCCCGTGC
ACGTCGACCTCCACCAATCGTCGACGTGCACGGAGAATAAATGGCGATGA
AGTCGCACTCGTACTTCGCAGCGAACATCAAAAGCTCCTCCGCATGCCCC
GGGCCGTTGGTCCCTCTCTCGGACATGGTGCGGACGTTCCATGTGGCAAC
CGCCAGCTCCTTCGAACGTACTGCTGCTCTTGCCGTCGAGCGAACCAGAC
GGGTGTGTGCTCTGGCGGCACGTCGAGCCGGCCGTCCTCTCCTCCTTAGC
TTCCTTCTTTCCAAGTCTCTCTCCTCTTGGTATCTATCCCAAATCCGCCT
CTTTTTGGTTACTCTCTGTTTCCTCTCTCTCTCCACCCTACCCTGGTTCC
TGCCTTGTTGCTCCTGCACAGGGATCAGCTTTTCCCGTGCACGTCGACCT
CCACCAATCGTCGACGTGCACGGAGAATAA
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