mRNA_H-elongata_contig149625.3318.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149625.3318.1
Unique NamemRNA_H-elongata_contig149625.3318.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.700e-20
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 PSINRKAIGVMASAGALESAFLTYQKMKPGGFDLLCGAGGGCADVLSGPYSNV 159
            P+INRKAIG +AS GALESA+LTYQK+ P G DLLCGA GGC DVL+GPYSNV
Sbjct:   22 PAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNV 74
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.160e-20
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 PSINRKAIGVMASAGALESAFLTYQKMKPGGFDLLCGAGGGCADVLSGPYSNV 159
            P+INRKAIG +AS GALESA+LTYQK+ P G DLLCGA GGC DVL+GPYSNV
Sbjct:  111 PAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNV 163
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: K0SJP2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJP2_THAOC)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 PSINRKAIGVMASAGALESAFLTYQKMKP-GGFD--------LLCGAGGGCADVLSGPYSNV 159
            PS+ RK +  ++SAG LE+A+LTY K+   GG D        L   AGGGCADVL GPYS+V
Sbjct:   98 PSLRRK-LAAVSSAGLLETAYLTYDKLSASGGGDRGSSLVGALCASAGGGCADVLGGPYSSV 158
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: B7G622_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G622_PHATC)

HSP 1 Score: 52.8 bits (125), Expect = 1.280e-6
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 RKAIGVMASAGALESAFLTYQKMKPGGFDLLCGAGGGCADVLSGPYSNV 159
            R+ +G++ASAG +E+A+LT  K+     D+LCGA GGC+ +L+GPY+ +
Sbjct:   86 RRVMGLVASAGMIETAYLTLTKLTDK-VDILCGADGGCSSILNGPYAFI 133
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: A0A7S0LHA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA4_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 4.470e-6
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   13 RKAIGVMASAGALESAFLTYQKMKPGG--FDLLC-GAGGGCADVLSGPYSNV 159
            R ++ ++ASAG  E+ F+T+ K+  GG   + LC  AGGGCADVL+GP+S V
Sbjct:   55 RASLALLASAGMAETGFITFDKLWGGGAAVEALCTAAGGGCADVLNGPWSTV 106
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BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Match: A0A7S0J935_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J935_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.100e-5
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   13 RKAIGVMASAGALESAFLTYQKMKPGG--FDLLCGAGGG-CADVLSGPYSNV 159
            R A+G +A AG +E+A +TY K+   G   + LC  GGG CADVL+GP+S V
Sbjct:    6 RAAVGGLAGAGVVETALITYDKLWGDGSAVESLCAVGGGGCADVLNGPWSTV 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149625.3318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G9E2_ECTSI3.700e-2077.36Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE8.160e-2077.36VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
K0SJP2_THAOC1.010e-751.61Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7G622_PHATC1.280e-646.94Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0LHA4_9EUKA4.470e-650.00Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0J935_9EUKA2.100e-550.00Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149625contigH-elongata_contig149625:156..314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue8.9e-12
Seed eggNOG ortholog2880.D7G9E2
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
EggNOG free text desc.Vitamin K epoxide reductase family
EggNOG OGs2QRER@2759,COG4243@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.6226327-CDS-H-elongata_contig149625:155..2841622929884.6226327-CDS-H-elongata_contig149625:155..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149625 156..284 -
1691679194.9435313-CDS-H-elongata_contig149625:155..2841691679194.9435313-CDS-H-elongata_contig149625:155..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149625 156..284 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929884.6400905-UTR-H-elongata_contig149625:284..3141622929884.6400905-UTR-H-elongata_contig149625:284..314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149625 285..314 -
1691679194.9547105-UTR-H-elongata_contig149625:284..3141691679194.9547105-UTR-H-elongata_contig149625:284..314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149625 285..314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149625.3318.1prot_H-elongata_contig149625.3318.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149625 156..284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149625.3318.1

>prot_H-elongata_contig149625.3318.1 ID=prot_H-elongata_contig149625.3318.1|Name=mRNA_H-elongata_contig149625.3318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MASAGALESAFLTYQKMKPGGFDLLCGAGGGCADVLSGPYSNV
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mRNA from alignment at H-elongata_contig149625:156..314-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149625.3318.1 ID=mRNA_H-elongata_contig149625.3318.1|Name=mRNA_H-elongata_contig149625.3318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig149625:156..314- (Himanthalia elongata Himel1 dioecious)
CCTTCGATCAACCGAAAGGCGATCGGGGTGATGGCCTCCGCAGGAGCGCT
CGAGTCGGCCTTCCTGACGTACCAGAAGATGAAGCCCGGAGGTTTCGATC
TCTTGTGCGGGGCTGGCGGAGGCTGCGCCGACGTGTTGAGCGGACCGTAC
TCGAACGTA
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Coding sequence (CDS) from alignment at H-elongata_contig149625:156..314-

>mRNA_H-elongata_contig149625.3318.1 ID=mRNA_H-elongata_contig149625.3318.1|Name=mRNA_H-elongata_contig149625.3318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig149625:156..314- (Himanthalia elongata Himel1 dioecious)
ATGGCCTCCGCAGGAGCGCTCGAGTCGGCCTTCCTGACGTACCAGAAGAT
GAAGCCCGGAGGTTTCGATCTCTTGTGCGGGGCTGGCGGAGGCTGCGCCG
ACGTGTTGAGCGGACCGTACTCGAACGTAATGGCCTCCGCAGGAGCGCTC
GAGTCGGCCTTCCTGACGTACCAGAAGATGAAGCCCGGAGGTTTCGATCT
CTTGTGCGGGGCTGGCGGAGGCTGCGCCGACGTGTTGAGCGGACCGTACT
CGAACGTA
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