mRNA_H-elongata_contig149468.3309.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: D7FZH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH3_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.700e-56 Identity = 80/146 (54.79%), Postives = 115/146 (78.77%), Query Frame = 1
Query: 1 SMADWTAFTTIGTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMSQWCR 438
S+ DW+AFT +G +++GT+LH W+ FLE + S+V+ +R+K+K+GRVVLQV +D TIGA+++N+G FA +T+ +A LTGR PLP+L S++ +V+S + MMM N +LWPWVSF+NF ++PA RVLV+N VAV W YLMS+WCR
Sbjct: 144 SLVDWSAFTLVGAVFIGTVLHHWYGFLERMGNSEVITSRIKSKWGRVVLQVVLDQTIGASLVNSGYFACHTVCLAGLTGRAFPLPELGSSIVEKVTSRYVVMMMNNFRLWPWVSFVNFAFIPADLRVLVSNFVAVLWGYLMSKWCR 289
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.000e-20 Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 40 LYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
L+LG LH WFNF++ + + + K+ RV++Q +D T+G +N G F +L L G L PL +++S W ++ N +LWP +++NF++VP K+RVL +N VAVFW+ +S
Sbjct: 130 LFLGPSLHYWFNFIDYVGKLPAIAKLKKSV--RVLVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSLMWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLS 256
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A7S0UHY9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UHY9_HEMAN) HSP 1 Score: 71.6 bits (174), Expect = 4.120e-12 Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1
Query: 67 WFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTI---LVAALTGRLSPLPDLWSA--------VRH---RVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMSQ 429
W+ +ES + KF R +L+ +D T+ + + T F T+ L+A L +++ LP + S V H +V+ N W ++EN K+WP V +NF VP KF+VL NLVA++WN+++S
Sbjct: 149 WYGGMESALSQDI-------KF-RFLLKTALDQTVFSTGITTLTFMCITVVEGLLAPLEWKMNALPRITSQSVLPLTTLVDHGWTKVTRNLWETLLENWKVWPAVQLLNFSVVPVKFQVLFVNLVAIWWNFVLSM 275
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: UPI001E8CB821 (uncharacterized protein n=1 Tax=Boeremia exigua TaxID=749465 RepID=UPI001E8CB821) HSP 1 Score: 66.6 bits (161), Expect = 6.590e-11 Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
G L G W+ L +K G +V +V D + A + N G+F + +A L G S++R R+ + + P + +N +WPWV F+NF+YVPA RVLV N++++ WN +S
Sbjct: 26 GGLIFGPAATTWYGLLTR-------HVNFASKNGTIVARVACDQLLFAPV-NMGLFLSS---MAYLEG---------SSIRDRLGAAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 136
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A162YUK6_DIDRA (Integral component of membrane n=1 Tax=Didymella rabiei TaxID=5454 RepID=A0A162YUK6_DIDRA) HSP 1 Score: 68.2 bits (165), Expect = 7.870e-11 Identity = 41/131 (31.30%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
G + G W+ L + +K G +V +V D + A + N G+F + +A L G S+V+ R++S + P + +N +WPWV F+NF+YVPA RVLV N++++ WN +S
Sbjct: 137 GGIIFGPAATTWYGILTK-------HVNLSSKNGTIVARVACDQFLFAPV-NMGLFLTS---MAYLEG---------SSVKDRLNSAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 247
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A8H7IWD6_9PLEO (Uncharacterized protein n=2 Tax=Didymellaceae TaxID=683158 RepID=A0A8H7IWD6_9PLEO) HSP 1 Score: 67.0 bits (162), Expect = 8.070e-11 Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 34 GTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
G + G W+ L + +K G ++ +V D + A + N G+F + +A L G S+V+ R++S + P + +N +WPWV F+NF+YVPA RVLV N++++ WN +S
Sbjct: 57 GGVIFGPAATTWYGILTK-------HVNLSSKNGTILARVACDQFLFAPV-NMGLFLTS---MAYLEG---------SSVKERLNSAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 167
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A0U5FUK1_ASPCI (Uncharacterized protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5FUK1_ASPCI) HSP 1 Score: 65.9 bits (159), Expect = 1.660e-10 Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 1
Query: 28 TIGTLYLGTLLHIWFNFLES------------LAQSKVVRTRVKTKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
T L L L +W LES ++K + + K V ++ +D IG A NT+ A G L + ++ ++ ++FWP+M+ LKLWP+VS +NF VPA R+LV +L V W +S
Sbjct: 47 TTSALILSPLSFLWLEGLESRFPSFINDKPTATGKAKTNKKKPKLNVRNTVAKIIVDQVIGGAW--------NTVAFIATMGLLRGQD--YEVIKGQIQNDFWPIMLAGLKLWPFVSILNFTVVPADKRLLVGSLFGVVWGIYLS 181
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A1Y2MAH0_EPING (Uncharacterized protein n=1 Tax=Epicoccum nigrum TaxID=105696 RepID=A0A1Y2MAH0_EPING) HSP 1 Score: 65.9 bits (159), Expect = 2.190e-10 Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 124 TKFGRVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
+K G +V +V D + A + N G+F ++T+ A L G S+VR R++ + P + +N +WPWV F+NF+YVPA RVLV N++++ WN +S
Sbjct: 80 SKNGTIVARVACDQLVFAPV-NMGLF-LSTM--AYLEG---------SSVRDRLAQAYVPGLTKNFMVWPWVQFVNFKYVPADLRVLVVNVISLGWNCYLS 167
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A5M3Z2N4_ASPTE (Integral membrane protein n=1 Tax=Aspergillus terreus TaxID=33178 RepID=A0A5M3Z2N4_ASPTE) HSP 1 Score: 65.1 bits (157), Expect = 3.250e-10 Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1
Query: 55 LLHIWFNFLESLAQSKVVRTRVKTKFGR------------VVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
L+ +W LE V R K+K V+++ +D T+GA NT+L A G L + + A+ ++ ++FWPM++ LKLWP VS +NF VP R+LV +L V W +S
Sbjct: 56 LMFLWGEGLEKAFPGSVESERTKSKTDNDKTQKPRLNVKNTVVKITIDQTVGAVW--------NTVLFIATLGLLRG--EAFEAILDQIRTDFWPMVIAGLKLWPLVSIMNFTVVPVDQRLLVGSLFGVVWAVYLS 181
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Match: A0A1L9S9L5_9EURO (Uncharacterized protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9S9L5_9EURO) HSP 1 Score: 64.7 bits (156), Expect = 4.240e-10 Identity = 41/134 (30.60%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 55 LLHIWFNFLES--------LAQSKVVRTRVKTKFG--RVVLQVGMDSTIGAAMLNTGVFAINTILVAALTGRLSPLPDLWSAVRHRVSSNFWPMMMENLKLWPWVSFINFRYVPAKFRVLVTNLVAVFWNYLMS 426
L+ +W N LE+ +++ T+ KT+ V +V +D T+G A + A+ + AL G+ D + + ++ ++FWP+M+ LK+WP+VS +NF VPA R+LV +L V W +S
Sbjct: 54 LIFLWLNGLEAQFPGTTTTTTKTEKGETQKKTQLNVPNTVAKVVLDQTVGGAWIT----ALFIATMGALRGQ-----D-YGLIMEQIKTDFWPIMIAGLKMWPFVSILNFTVVPADQRLLVNSLFGVIWAVYLS 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149468.3309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149468.3309.1 >prot_H-elongata_contig149468.3309.1 ID=prot_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MADWTAFTTIGTLYLGTLLHIWFNFLESLAQSKVVRTRVKTKFGRVVLQVback to top mRNA from alignment at H-elongata_contig149468:203..1494- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149468.3309.1 ID=mRNA_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-elongata_contig149468:203..1494- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149468:203..1494- >mRNA_H-elongata_contig149468.3309.1 ID=mRNA_H-elongata_contig149468.3309.1|Name=mRNA_H-elongata_contig149468.3309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig149468:203..1494- (Himanthalia elongata Himel1 dioecious)back to top |