mRNA_H-elongata_contig149054.3290.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149054.3290.1
Unique NamemRNA_H-elongata_contig149054.3290.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: D8LM51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM51_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 4.920e-63
Identity = 98/120 (81.67%), Postives = 109/120 (90.83%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGNSRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDDCGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEADDVGLPTATA 360
            +IAAFFTSIPDCVLGGMTTFLFANVAVSGIKIL+SAG+SRRSRFI ACS+GLGLGVTIAP+WATNNLWPC DCGE L S RDG+ILVLSTGYS+GCAAA++LNLIIP+EA +  LP   A
Sbjct:  152 KIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILSSAGDSRRSRFIVACSMGLGLGVTIAPAWATNNLWPCSDCGEELRSFRDGVILVLSTGYSMGCAAAIILNLIIPNEAMEEELPVTKA 271
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A087SI12_AUXPR (Uric acid-xanthine permease n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SI12_AUXPR)

HSP 1 Score: 129 bits (324), Expect = 1.260e-32
Identity = 59/103 (57.28%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:   19 TSIPDCVLGGMTTFLFANVAVSGIKILASAGNSRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDDCGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSE 327
            T+IP+CVLGGMTTFLFANV  SGIKI+ S   +RR+RF+ AC+L LG+GVT+ P+WA NNLW   +  E +  +RD +IL+L TG++LG   A+VLNL++P E
Sbjct:  399 TTIPNCVLGGMTTFLFANVIASGIKIMISQHFTRRNRFVIACALALGIGVTLVPNWAQNNLWNNPNLSEGVQGVRDALILILETGFTLGALTAIVLNLLLPDE 501
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: E1ZE94_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZE94_CHLVA)

HSP 1 Score: 127 bits (319), Expect = 8.630e-32
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGNSRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDDCGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSE 327
            + AA  T+IPDCV GGMTTFLFANV  SGIKI+     +RR+R I A S+ LG+GVT+ P WATN LWPC  C E +  L++ +I +L TG+ +G   A+ LNL++P E
Sbjct:  472 KFAAVITTIPDCVFGGMTTFLFANVIASGIKIIVGDHLTRRNRVILAFSMALGVGVTLVPQWATNALWPCTGCSEGVKGLQEAVITILETGFCIGALTAIFLNLVLPME 580
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A5J4Y735_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y735_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 1.150e-31
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGNSRRSRFIAACSLGLGLGVTIAPSWATNNLWPC-DDCGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEA-DDVGLPTATA 360
            ++ AFFTSIP CVLGGMTTFLFA V VSGIK+++    +RRSRFI   ++GLGLGVTI P+WATNNLW         L   R+  ILVLS G+S+GC  +++L+L +P +A D+V   +A+A
Sbjct:  438 KVGAFFTSIPQCVLGGMTTFLFAGVCVSGIKVISMDPLTRRSRFILCVAVGLGLGVTIVPNWATNNLWDVYPTTASGLAGFRNACILVLSNGFSVGCIISVLLHLALPFDAVDNVDADSASA 559
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A8IB05_CHLRE (Predicted protein n=6 Tax=Chlamydomonas TaxID=3052 RepID=A8IB05_CHLRE)

HSP 1 Score: 125 bits (313), Expect = 6.520e-31
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEA 330
            ++ A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P WAT NLWP        L  LRD IILV+ST ++LG   AL+LNLIIP++A
Sbjct:  469 KVGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPQWATLNLWPVTPGMSPGLRGLRDAIILVISTSFTLGAVVALILNLIIPADA 580
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A8II76_CHLRE (Uric acid-xanthine permease n=4 Tax=Chlamydomonas TaxID=3052 RepID=A8II76_CHLRE)

HSP 1 Score: 124 bits (312), Expect = 7.690e-31
Identity = 68/121 (56.20%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEADDVGLPTAT 357
            ++ A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P WAT NLWP        L  LRD IILV+ST ++LG   AL+LNLIIP +  D   PT T
Sbjct:  460 KVGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPQWATLNLWPVTPGMSPGLRGLRDAIILVISTSFTLGAVVALILNLIIPLDKTD---PTVT 577
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A835WK57_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WK57_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 7.740e-31
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEA 330
            +I A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P WAT NLWP        L  LRD IILV+ST ++LG   AL+LNLIIP +A
Sbjct: 1069 KIGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPQWATLNLWPVTPGMSPGLRGLRDAIILVISTSFTLGAVVALILNLIIPQDA 1180
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A835WK27_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WK27_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 1.480e-30
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEADD 336
            ++ A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P WAT NLWP        L  LRD IILV+ST ++LG   AL+LNLIIP +  D
Sbjct:  461 KVGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPQWATLNLWPVTPGMSPGLRGLRDAIILVISTSFTLGAVVALILNLIIPVDKTD 574
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A150G2K6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G2K6_GONPE)

HSP 1 Score: 124 bits (310), Expect = 1.590e-30
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSEADDVGLPTATAA 363
            ++ A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P+WATN LWP        +  +RD IILVLST ++ G   AL+LNL+IP ++ +   PT T A
Sbjct:  477 KVGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPTWATNQLWPITPGMNSGVRGIRDAIILVLSTSFTFGAVTALILNLLIPLDSSN---PTTTGA 596
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BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Match: A0A835SW08_CHLIN (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835SW08_CHLIN)

HSP 1 Score: 123 bits (309), Expect = 2.180e-30
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGN-SRRSRFIAACSLGLGLGVTIAPSWATNNLWPCDD-CGEALGSLRDGIILVLSTGYSLGCAAALVLNLIIPSE 327
            ++ A+ T+IP+CVLGGMTTFLFANV  SGIKI+ +    +RRSRFI ACSL L  GV + P WAT NLWP        L  LRD IILV+ST ++LG   AL+LNLIIP +
Sbjct:  465 KVGAWITTIPECVLGGMTTFLFANVIASGIKIIINGDPLTRRSRFILACSLALAFGVELVPQWATLNLWPVTPGMSPGLRGLRDAIILVISTSFTLGAVVALILNLIIPKD 575
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149054.3290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM51_ECTSI4.920e-6381.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A087SI12_AUXPR1.260e-3257.28Uric acid-xanthine permease n=3 Tax=Auxenochlorell... [more]
E1ZE94_CHLVA8.630e-3253.21Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A5J4Y735_9CHLO1.150e-3154.10Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A8IB05_CHLRE6.520e-3158.04Predicted protein n=6 Tax=Chlamydomonas TaxID=3052... [more]
A8II76_CHLRE7.690e-3156.20Uric acid-xanthine permease n=4 Tax=Chlamydomonas ... [more]
A0A835WK57_9CHLO7.740e-3158.93Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835WK27_9CHLO1.480e-3057.02Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A150G2K6_GONPE1.590e-3052.85Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835SW08_CHLIN2.180e-3057.66Uncharacterized protein n=3 Tax=Chlamydomonas TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149054contigH-elongata_contig149054:782..1593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.4e-49
Seed eggNOG ortholog2880.D8LM51
KEGG koko:K03458
KEGG TC2.A.40
GOsGO:0000322,GO:0000323,GO:0000324,GO:0002054,GO:0002060,GO:0003674,GO:0005215,GO:0005345,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005775,GO:0005776,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006863,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0010008,GO:0012505,GO:0015075,GO:0015143,GO:0015205,GO:0015711,GO:0015747,GO:0015851,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031974,GO:0031982,GO:0034220,GO:0034423,GO:0036094,GO:0042906,GO:0042907,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0070013,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0097159,GO:0097708,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:1901363,GO:1901702,GO:1904823
EggNOG free text desc.xanthine transmembrane transporter activity
EggNOG OGs2QQD4@2759,COG2233@1
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionXanthine/uracil/vitamin C permease
Ec32 orthologEc-06_002480.1
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.1256447-CDS-H-elongata_contig149054:781..9101622929882.1256447-CDS-H-elongata_contig149054:781..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149054 782..910 -
1691679194.045864-CDS-H-elongata_contig149054:781..9101691679194.045864-CDS-H-elongata_contig149054:781..910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149054 782..910 -
1622929882.1481-CDS-H-elongata_contig149054:1359..15931622929882.1481-CDS-H-elongata_contig149054:1359..1593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149054 1360..1593 -
1691679194.0582926-CDS-H-elongata_contig149054:1359..15931691679194.0582926-CDS-H-elongata_contig149054:1359..1593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149054 1360..1593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149054.3290.1prot_H-elongata_contig149054.3290.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149054 782..1593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149054.3290.1

>prot_H-elongata_contig149054.3290.1 ID=prot_H-elongata_contig149054.3290.1|Name=mRNA_H-elongata_contig149054.3290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
QIAAFFTSIPDCVLGGMTTFLFANVAVSGIKILASAGNSRRSRFIAACSL
GLGLGVTIAPSWATNNLWPCDDCGEALGSLRDGIILVLSTGYSLGCAAAL
VLNLIIPSEADDVGLPTATAA
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mRNA from alignment at H-elongata_contig149054:782..1593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149054.3290.1 ID=mRNA_H-elongata_contig149054.3290.1|Name=mRNA_H-elongata_contig149054.3290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=812bp|location=Sequence derived from alignment at H-elongata_contig149054:782..1593- (Himanthalia elongata Himel1 dioecious)
CAGATTGCGGCGTTCTTCACATCCATCCCGGACTGCGTCCTCGGCGGCAT
GACCACGTTCCTGTTCGCGAACGTGGCTGTTTCGGGCATCAAGATCCTTG
CCTCCGCGGGAAACTCCCGCCGCAGCCGTTTCATCGCAGCGTGCTCGCTG
GGCCTCGGCCTTGGCGTGACCATCGCCCCGTCCTGGGCTACTAATAACTT
GTGGCCGTGCGACGATTGCGGAGAGGCACTAGGGGTGAGAACGAACCGCT
TCCTTTCACCGACCCACATCCCCATCCCCATCCCAGGAAGCACGGTGTAT
TGCCCATGCGTCGAGAATAATTCCACTCGACAGCGGGGATTTCCGAATAT
GACCATGTATCTCGGTAAACAACTGTGCACAGGAAGTCTTTTCTCACGCT
GGTCGTTTCCTCAAAAGACCCGCCGCAACTCCACTAATGCCACTGCAGCA
CGCCTTTGAAGGCAGAGTTGAATGAACTGCATCCCCGTTACCCCGCCGCC
CCCCCATGCCCTCCATATATAAACCTTGCTACCCTGAATGTCTTGTTTTG
GCGCTTTCAATAATTATCAATAATAAAAAATGAATCAAACATCCATCAAT
CATCAATATTCTAAAATACTCAACATCATCAACAATCAATCCTCACGGTC
GCGAACTGCTCCGTACACACTTGAACTCGCTAGTCCCTCCGGGACGGCAT
AATCCTGGTGCTCAGCACAGGCTACAGCCTGGGCTGCGCCGCCGCCCTCG
TCCTGAACCTGATCATCCCCAGCGAGGCCGACGATGTTGGGCTGCCCACC
GCCACCGCCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig149054:782..1593-

>mRNA_H-elongata_contig149054.3290.1 ID=mRNA_H-elongata_contig149054.3290.1|Name=mRNA_H-elongata_contig149054.3290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig149054:782..1593- (Himanthalia elongata Himel1 dioecious)
CAGATTGCGGCGTTCTTCACATCCATCCCGGACTGCGTCCTCGGCGGCAT
GACCACGTTCCTGTTCGCGAACGTGGCTGTTTCGGGCATCAAGATCCTTG
CCTCCGCGGGAAACTCCCGCCGCAGCCGTTTCATCGCAGCGTGCTCGCTG
GGCCTCGGCCTTGGCGTGACCATCGCCCCGTCCTGGGCTACTAATAACTT
GTGGCCGTGCGACGATTGCGGAGAGGCACTAGGGCAGATTGCGGCGTTCT
TCACATCCATCCCGGACTGCGTCCTCGGCGGCATGACCACGTTCCTGTTC
GCGAACGTGGCTGTTTCGGGCATCAAGATCCTTGCCTCCGCGGGAAACTC
CCGCCGCAGCCGTTTCATCGCAGCGTGCTCGCTGGGCCTCGGCCTTGGCG
TGACCATCGCCCCGTCCTGGGCTACTAATAACTTGTGGCCGTGCGACGAT
TGCGGAGAGGCACTAGGGTCCCTCCGGGACGGCATAATCCTGGTGCTCAG
CACAGGCTACAGCCTGGGCTGCGCCGCCGCCCTCGTCCTGAACCTGATCA
TCCCCAGCGAGGCCGACGATGTTGGGCTGCCCACCGCCACCGCCGCCTCC
CTCCGGGACGGCATAATCCTGGTGCTCAGCACAGGCTACAGCCTGGGCTG
CGCCGCCGCCCTCGTCCTGAACCTGATCATCCCCAGCGAGGCCGACGATG
TTGGGCTGCCCACCGCCACCGCCGCC
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