mRNA_H-elongata_contig14841.3258.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14841.3258.1
Unique NamemRNA_H-elongata_contig14841.3258.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14841.3258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14841contigH-elongata_contig14841:5621..6235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-12_008680.1
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14841.3258.1prot_H-elongata_contig14841.3258.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14841 5850..6179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.97056-UTR-H-elongata_contig14841:5620..58491622929878.97056-UTR-H-elongata_contig14841:5620..5849Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14841 5621..5849 +
1691679192.8362024-UTR-H-elongata_contig14841:5620..58491691679192.8362024-UTR-H-elongata_contig14841:5620..5849Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14841 5621..5849 +
1622929878.9982874-UTR-H-elongata_contig14841:6179..62351622929878.9982874-UTR-H-elongata_contig14841:6179..6235Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14841 6180..6235 +
1691679192.863624-UTR-H-elongata_contig14841:6179..62351691679192.863624-UTR-H-elongata_contig14841:6179..6235Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14841 6180..6235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.9845922-CDS-H-elongata_contig14841:5849..61791622929878.9845922-CDS-H-elongata_contig14841:5849..6179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14841 5850..6179 +
1691679192.8463385-CDS-H-elongata_contig14841:5849..61791691679192.8463385-CDS-H-elongata_contig14841:5849..6179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14841 5850..6179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14841.3258.1

>prot_H-elongata_contig14841.3258.1 ID=prot_H-elongata_contig14841.3258.1|Name=mRNA_H-elongata_contig14841.3258.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MELMSDVRIMTLDVLEERVDDVVWPRRLERLTFGDTFNEVLEGVSWPTSL
RQLSFGSSFNQAIDRVVWPPSLQTLVLGSDFDQAIDRMKWSNSLEKLTLA
WCLISQSRR*
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mRNA from alignment at H-elongata_contig14841:5621..6235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14841.3258.1 ID=mRNA_H-elongata_contig14841.3258.1|Name=mRNA_H-elongata_contig14841.3258.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at H-elongata_contig14841:5621..6235+ (Himanthalia elongata Himel1 dioecious)
TGCAGGGCTTTTGCTGGCTTCGCGTCGACGAAGGATCTTCAACTGTTATA
TCTGCAGTGCTGCGCAGCGTGCCCCCAGCACTGCTCTGTGCCTGAGAGTG
AACCACGGCCTACCGAGTAGACTGATTTGTTCCACCGCGAGTAACGATGC
ACAAGCCAGAACACGCGTGCCGCAGCTTCAAGTACAAACGGTTGTGTGGT
CGCTTCCCATCGCTGCGTGGACGAGTGGGATGGAGTTAATGTCAGACGTA
CGGATCATGACTTTGGATGTCTTGGAGGAAAGAGTGGACGATGTGGTATG
GCCCCGGAGGCTCGAAAGACTGACGTTCGGGGATACGTTTAACGAGGTGC
TTGAAGGAGTGTCTTGGCCGACTTCATTGCGGCAGCTTTCATTCGGTTCC
TCCTTCAACCAAGCTATTGATCGAGTTGTCTGGCCTCCCTCGCTTCAGAC
ATTAGTATTGGGGTCTGACTTTGACCAGGCCATCGACCGCATGAAGTGGT
CCAATTCCCTTGAGAAGCTCACTTTGGCGTGGTGTTTGATAAGCCAATCA
AGGAGGTGAAGTGGCCAGCGTCGCTACAGCAACTGAAGTTTGGGAGGGAC
TTTGATCAGTCGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig14841:5621..6235+

>mRNA_H-elongata_contig14841.3258.1 ID=mRNA_H-elongata_contig14841.3258.1|Name=mRNA_H-elongata_contig14841.3258.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig14841:5621..6235+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTAATGTCAGACGTACGGATCATGACTTTGGATGTCTTGGAGGA
AAGAGTGGACGATGTGGTATGGCCCCGGAGGCTCGAAAGACTGACGTTCG
GGGATACGTTTAACGAGGTGCTTGAAGGAGTGTCTTGGCCGACTTCATTG
CGGCAGCTTTCATTCGGTTCCTCCTTCAACCAAGCTATTGATCGAGTTGT
CTGGCCTCCCTCGCTTCAGACATTAGTATTGGGGTCTGACTTTGACCAGG
CCATCGACCGCATGAAGTGGTCCAATTCCCTTGAGAAGCTCACTTTGGCG
TGGTGTTTGATAAGCCAATCAAGGAGGTGAATGGAGTTAATGTCAGACGT
ACGGATCATGACTTTGGATGTCTTGGAGGAAAGAGTGGACGATGTGGTAT
GGCCCCGGAGGCTCGAAAGACTGACGTTCGGGGATACGTTTAACGAGGTG
CTTGAAGGAGTGTCTTGGCCGACTTCATTGCGGCAGCTTTCATTCGGTTC
CTCCTTCAACCAAGCTATTGATCGAGTTGTCTGGCCTCCCTCGCTTCAGA
CATTAGTATTGGGGTCTGACTTTGACCAGGCCATCGACCGCATGAAGTGG
TCCAATTCCCTTGAGAAGCTCACTTTGGCGTGGTGTTTGATAAGCCAATC
AAGGAGGTGA
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