mRNA_H-elongata_contig1484.3257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1484.3257.1
Unique NamemRNA_H-elongata_contig1484.3257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: D7FR54_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR54_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 6.400e-159
Identity = 240/320 (75.00%), Postives = 281/320 (87.81%), Query Frame = 1
Query:  400 TSDWKVKLIRQEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASG------LTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRAK 1341
            T + K + IR EE+ACFRR+MGIK++GE++ADPMESF +MP A   +DA  TRR+LL NVEESAWKEPTPVQMQAVP+LVAGRDLLAAAPTGSGKTAAF+MP+ILRLG   AD ++  GVR ILLAPTRELAAQIHRD+VRL +GR++RVCLLTK G  KAAAA+G      L+GYD+++STPMRLV L+RE +V LA+VEMVVLDEADKLFDAGAA   SD +F+GQVDEVLAACSH+ VQRALFSAT+GQ VKEL+ESVLR+P++LTVGT+NAGAA+IDQRLVYVG+EEGKLLAIRQLVQ+GLRPPVL+FLQSKDRAK
Sbjct:   24 TGEAKARSIRLEEVACFRRRMGIKVKGEEVADPMESFSEMPSATTSEDAGQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLGVQRADPQAS-GVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSRNALSGYDIVVSTPMRLVALVRERAVCLASVEMVVLDEADKLFDAGAASGGSDKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDPIFLTVGTQNAGAADIDQRLVYVGREEGKLLAIRQLVQEGLRPPVLVFLQSKDRAK 342          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A6H5JCM6_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM6_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 1.030e-158
Identity = 236/320 (73.75%), Postives = 281/320 (87.81%), Query Frame = 1
Query:  400 TSDWKVKLIRQEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASG------LTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRAK 1341
            T + K +LIR EE+ACFRR+MGIK++GE++ADPM SF +MP A   ++AA TRR+LL NVEESAWKEPTPVQMQAVP+LVAGRDLLAAAPTGSGKTAAF+MP+ILRLG   AD ++  GVR ILLAPTRELAAQIHRD+VRL +GR++RVCLLTK G  KAAAA+G      L+GYD+++STPMRLV L+RE ++ LA+VEMVVLDEADKLFDAGAA   SD +F+GQVDEVLAACSH+ VQRALFSAT+GQ VKEL+ESVLR+ ++LTVGT+N+GAA+IDQRLVYVG+EEGKLLA+RQLVQ+GLRPPVL+FLQSKDRAK
Sbjct:   24 TGEAKARLIRLEEVACFRRRMGIKVKGEEVADPMASFSEMPSASTSKEAAQTRRVLLHNVEESAWKEPTPVQMQAVPILVAGRDLLAAAPTGSGKTAAFVMPMILRLGVQRADPQAS-GVRGILLAPTRELAAQIHRDVVRLSRGRRLRVCLLTKAGATKAAAATGMDSKNALSGYDIVVSTPMRLVALVRERAICLASVEMVVLDEADKLFDAGAASGGSDKAFIGQVDEVLAACSHQQVQRALFSATVGQQVKELSESVLRDHIFLTVGTQNSGAADIDQRLVYVGREEGKLLAVRQLVQEGLRPPVLVFLQSKDRAK 342          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A835Z7A7_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A7_9STRA)

HSP 1 Score: 305 bits (781), Expect = 6.990e-92
Identity = 164/299 (54.85%), Postives = 213/299 (71.24%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDMP-----QAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASGLTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQ-----LVQDGL 1296
            +EEIA FRR++GIK+ G D+  P+  F  +P      A   + AA  R  LL  +E S W EPTPVQMQA+P +  GRD+LAAAPTGSGKTAA+++P ++ LGG+        G+RA+LLAPTRELAAQIHR++ RL  GRK++ C+L+K  V  +    GL   D++I TPMR V  LR G+++L  V +VVLDEADKLFDAG    + +++F+ QVDE+LAAC     QRALFSAT+G +VKELA SVLR+PV +++GT NAGA+ IDQ+LV+VG+EEGKLLAIRQ     LV DGL
Sbjct:  232 KEEIAAFRRRLGIKVEGSDVPAPLAEFSQLPAAKTRSAAAAESAAHARGALLSAIEASDWTEPTPVQMQAIPAMAEGRDVLAAAPTGSGKTAAYVIPALMLLGGDAVT--KGEGIRALLLAPTRELAAQIHREVERLAAGRKLKACVLSKALVAGSRGQGGLAKNDILICTPMRAVAALRSGALTLTRVRLVVLDEADKLFDAGREGQAPEDTFIAQVDELLAACPST-AQRALFSATLGPHVKELATSVLRDPVSISIGTPNAGASTIDQKLVFVGREEGKLLAIRQALFRELVYDGL 527          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: W7TL23_9STRA (RNA helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL23_9STRA)

HSP 1 Score: 289 bits (740), Expect = 2.180e-88
Identity = 170/324 (52.47%), Postives = 232/324 (71.60%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMR-GVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKG-GVVKAAAASGL-TGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAG------AAHSS--SDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVG--------TENAGAAE-IDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRAK 1341
            ++E+  FRR++ IK RGE++ D + SF  +P      DA+L +R LL+N+E S WKEPTP+QMQA+PVL  GRDLLA APTGSGKTAAF++P +LRL    A+AK +R G RA+LLAPTRELA+QI  ++ RL  GR  +V +++K     K  A  G+ +GYD++++TPMRL++ LREG V L  V  VVLDEADKLF+ G      AA  S   D SF+GQVDE+LAAC++ +VQRALFSAT+   +++LA SVLR+PV ++VG        T  A   E + Q LV+VG+EEGKLLA+RQL++ G+ PP+L+FL++K+RA+
Sbjct:   91 EDEMRAFRRRLRIKARGENVPDCLPSFSLLPCP----DASL-KRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRL--EKAEAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDEAGQGVFSGYDLLVATPMRLLQALREGRVDLRRVRAVVLDEADKLFELGREGKKNAAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIQDLAGSVLRDPVSVSVGLPSNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLENKERAR 407          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A662X853_9STRA (RNA helicase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X853_9STRA)

HSP 1 Score: 282 bits (722), Expect = 4.400e-87
Identity = 151/307 (49.19%), Postives = 216/307 (70.36%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDM-PQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASG---LTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRA 1338
            +E +   RRQ+GI++ G  +  P+ +F +M P A     A   +R+LL+N+E S +KEPTPVQMQA+P L+ GRD+LA APTGSGKTAAF +P++  L           G+R+I+LAPTR+LA QI  +  RL  G+K+ + LL+K      A+ +       +D++I+TP+RLV L++E  + L+TVEMV LDEAD+L + G         FV QVDE+ AAC+H  +QRA+FSAT+ Q V+ELA++VLR+PV + VGT+NAGAA I+Q+LV+VGKEEGKL+A++QL+ DGL+ P L+F+Q+K+RA
Sbjct:   16 REGVLLLRRQLGIRVEGVGVPAPLTAFEEMRPDASAN--AQHMKRVLLQNIERSEYKEPTPVQMQAIPSLLLGRDVLATAPTGSGKTAAFAIPMLANLATGSGTGG---GIRSIVLAPTRDLAVQIRAEFTRLAVGKKLHIALLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQETKLDLSTVEMVCLDEADRLLELG---------FVEQVDEIFAACTHAKIQRAMFSATMLQGVEELAQTVLRDPVKVAVGTKNAGAATIEQKLVFVGKEEGKLVAMKQLLHDGLKLPALLFVQNKERA 308          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A4D9CSS9_9STRA (RNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSS9_9STRA)

HSP 1 Score: 289 bits (740), Expect = 7.190e-87
Identity = 166/324 (51.23%), Postives = 229/324 (70.68%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMR-GVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKG-GVVKAAAASGL-TGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSS--------DNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVG--------TENAGAAE-IDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRAK 1341
            ++E+  FRR++ IK RGE++ D + SF  +P      DA+L +R LL+N+E S WKEPTP+QMQA+PVL  GRDLLA APTGSGKTAAF++P +LRL  +  +AK +R G RA+LLAPTRELA+QI  ++ RL  GR  +V +++K     K  A  G+ +GYD++++TPMRL++ LREG V L  V  V+LDEADKLF+ G     +        D SF+GQVDE+LAAC++ +VQRALFSAT+   + +LA SVLR+PV ++VG        T  A   E + Q LV+VG+EEGKLLA+RQL++ G+ PP+L+FL+SK+RA+
Sbjct:  240 EDEMRAFRRRLRIKARGENVPDCLPSFSLLPCP----DASL-KRTLLRNIESSQWKEPTPIQMQALPVLAMGRDLLATAPTGSGKTAAFVLPTLLRLEKS--EAKLLRNGPRALLLAPTRELASQICGEVQRLAAGRAFKVAVVSKALAATKDGAGQGVFSGYDLLVATPMRLLQALREGKVDLRRVRAVILDEADKLFELGREGKKNTAGESLEPDKSFLGQVDEILAACTYPEVQRALFSATLPPLIHDLASSVLRDPVSVSVGLASNRSNYTHAAAVPESVTQELVFVGREEGKLLALRQLLKQGVLPPILVFLESKERAR 556          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: K3X9X4_GLOUD (RNA helicase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X9X4_GLOUD)

HSP 1 Score: 288 bits (737), Expect = 1.230e-86
Identity = 148/305 (48.52%), Postives = 215/305 (70.49%), Query Frame = 1
Query:  433 EEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAA---ASGLTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRA 1338
            +EIA FRRQM I++ G  +  P+  F  M  +   +     + +LLKN+E S +KEPTP+QMQA+P ++ GRD+LA APTGSGKTAAF +PI+  LG       +  G+R+I+L+PTRELA QIH +  RL +GRK  + LL+K      AA   +     +D++I+TP+RLV L++E  + L+ VE+V LDEAD+LFD G         FV Q+DE+ AAC+H  +QRA+FSAT+ Q V+E+A+SVLR+P+ +++G +NAGA  I+Q+LV+VGKEEGK++A++QL+ +GLR P L+F+Q+K+RA
Sbjct:  203 DEIALFRRQMNIRVEGTAVPAPIAEFEKMRMSAQQEKM---KAVLLKNIEASEYKEPTPIQMQAIPSMLLGRDVLATAPTGSGKTAAFAIPILANLG-----TPAQEGIRSIVLSPTRELAVQIHTEFTRLCKGRKFHIVLLSKATAATIAAQIKSKCTVNHDILIATPLRLVHLIQETKIDLSMVEIVCLDEADRLFDMG---------FVEQIDEIFAACTHPKIQRAMFSATMLQGVEEMAQSVLRDPIKVSIGVKNAGATTIEQKLVFVGKEEGKIVAMKQLITEGLRVPALLFVQNKERA 490          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A2D4C2B4_PYTIN (RNA helicase (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2B4_PYTIN)

HSP 1 Score: 286 bits (732), Expect = 1.270e-86
Identity = 150/306 (49.02%), Postives = 218/306 (71.24%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGG---VVKAAAASGLTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRA 1338
            +EE+  FR+QM I++ G  +  P+ +F D  +    Q     R +LL N+E S +KEPTP+QMQA+P L+ GRD+LA APTGSGKTAAF +P++  LG     A   +G+RA++L+PTRELA QI  +  RL  GRK  + LL+K     ++ +   +    +D++I+TP+RLV L++E  + L+ VEM+ LDEAD+LFD G         FV Q+DE+LAAC+H  VQRA+FSAT+ Q V+E+A+SVLR+PV +++G +NAGA+ I+Q+LV+VGKEEGKL+A++QL+Q+GLR P L+F+Q+K+RA
Sbjct:  171 EEEVRLFRKQMNIRVEGTSVPAPIATF-DAMKLNATQ--LKMRSVLLHNIEASEYKEPTPIQMQAIPSLLLGRDVLATAPTGSGKTAAFAIPMLANLG-----APQQQGIRAVVLSPTRELAVQIFHEFQRLSAGRKFHIVLLSKATAATMISSIKNNCTVNHDLVIATPLRLVHLVQEAKLDLSMVEMICLDEADRLFDMG---------FVEQIDEILAACTHPRVQRAMFSATMLQGVEEMAQSVLRDPVKISIGVKNAGASSIEQKLVFVGKEEGKLVAMKQLIQEGLRLPALLFVQNKERA 459          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: A0A5D6XUD6_9STRA (RNA helicase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUD6_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.150e-86
Identity = 169/352 (48.01%), Postives = 231/352 (65.62%), Query Frame = 1
Query:  292 LKLNTDTGPGLGIFKGVEDRGARGKIADTTSAAIYATSDWKVKLIRQEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAA---ASGLTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRA 1338
            + L  D GP     K V+ + ++   AD  +AA       K K    EE+  FRRQMGI++ G     P+  F  M  +   +     R +LL+N+E S +KEPTPVQMQA+P ++ GRD+LA APTGSGKTAAF +P++  LG          GVRAI+L+PTRELA QIH +  RL +GRK  + LL+K      A+   +  +   D++I+TP+RLV L++   + L+TVEMV LDEAD+LFD G         FV QVDEV AACS   VQRA+FSAT+ Q V+E+A+SVLR+PV +++G +NAGAA I+Q+LV+VGKEEGKL+A++QL+ DGLR P L+F+Q+K+RA
Sbjct:  463 VALFRDNGPKAAKKKKVKSKQSKEGDADAPTAA-------KDK----EEVTLFRRQMGIRVEGTGAPAPIAEFAAMRLSASQEKM---RAVLLRNIEASEYKEPTPVQMQAIPSMLLGRDVLATAPTGSGKTAAFAIPMLANLGAPA----QREGVRAIVLSPTRELAVQIHAEFTRLSKGRKFHIVLLSKATAATIASQIKSKCMVNQDVLIATPLRLVHLIQVAQLDLSTVEMVCLDEADRLFDMG---------FVEQVDEVFAACSSAAVQRAMFSATMLQGVEEMAQSVLRDPVKVSIGVKNAGAATIEQKLVFVGKEEGKLVAMKQLIHDGLRVPALLFVQNKERA 787          
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Match: W2QZB9_PHYPN (RNA helicase n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZB9_PHYPN)

HSP 1 Score: 286 bits (732), Expect = 2.930e-86
Identity = 153/306 (50.00%), Postives = 217/306 (70.92%), Query Frame = 1
Query:  430 QEEIACFRRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKEPTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSMRGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASG---LTGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDNSFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTENAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRA 1338
            QEE+   RRQ+GI++ G  +  P+ SF DM +      A   +R+LL+N+E S +KEPT VQMQA+P  +  RD+LA APTGSGKTAAF +PI+  L    A + +  G+R+I+LAPTR+LA QI  +  RL  G+K+ + LL+K      A+ +       +D++I+TP+RLV L++E  V L+TVEMV LDEAD+L + G         FV QVDE+ AAC+H  VQRA+FSAT+ + V+ELA++VLR+PV + VGT+NAGA+ IDQ+LV+VGKEEGKL+A++QL+Q+GL+ P L+F+Q+K+RA
Sbjct:  215 QEEVQMLRRQLGIRVSGVSVPAPITSFADM-RLDSSASAQQMKRLLLQNIERSEYKEPTSVQMQAIPSFLLRRDVLATAPTGSGKTAAFAIPILANLA---AGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELG---------FVEQVDEIFAACTHPRVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQKLVFVGKEEGKLVAMKQLLQEGLQLPALLFVQNKERA 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1484.3257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR54_ECTSI6.400e-15975.00RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JCM6_9PHAE1.030e-15873.75RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z7A7_9STRA6.990e-9254.85RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7TL23_9STRA2.180e-8852.47RNA helicase n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A662X853_9STRA4.400e-8749.19RNA helicase n=1 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A4D9CSS9_9STRA7.190e-8751.23RNA helicase n=1 Tax=Nannochloropsis salina CCMP17... [more]
K3X9X4_GLOUD1.230e-8648.52RNA helicase n=1 Tax=Globisporangium ultimum (stra... [more]
A0A2D4C2B4_PYTIN1.270e-8649.02RNA helicase (Fragment) n=1 Tax=Pythium insidiosum... [more]
A0A5D6XUD6_9STRA2.150e-8648.01RNA helicase n=1 Tax=Pythium brassicum TaxID=14850... [more]
W2QZB9_PHYPN2.930e-8650.00RNA helicase n=9 Tax=Phytophthora parasitica TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1484contigH-elongata_contig1484:14191..15925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score470.3
Seed ortholog evalue9.9e-130
Seed eggNOG ortholog2880.D7FR54
Preferred nameDDX52
KEGG koko:K14779,ko:K14807
GOsGO:0000166,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048254,GO:0051179,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsKOG0344@1,KOG0344@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size1341
Cds size1341
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.8688097-CDS-H-elongata_contig1484:14190..153301622929878.8688097-CDS-H-elongata_contig1484:14190..15330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1484 14191..15330 +
1691679192.8126135-CDS-H-elongata_contig1484:14190..153301691679192.8126135-CDS-H-elongata_contig1484:14190..15330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1484 14191..15330 +
1622929878.8855958-CDS-H-elongata_contig1484:15724..159251622929878.8855958-CDS-H-elongata_contig1484:15724..15925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1484 15725..15925 +
1691679192.8269315-CDS-H-elongata_contig1484:15724..159251691679192.8269315-CDS-H-elongata_contig1484:15724..15925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1484 15725..15925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1484.3257.1prot_H-elongata_contig1484.3257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1484 14191..15925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1484.3257.1

>prot_H-elongata_contig1484.3257.1 ID=prot_H-elongata_contig1484.3257.1|Name=mRNA_H-elongata_contig1484.3257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=447bp
MSSNHILEILTSGAEFGERARKSSKAKTRNSRNERLELHGNNLPFNFFAP
AANTETKRRRESTEGARTTTSPVSAPDTVVDQAEAGVDVQSNICRGSLKL
NTDTGPGLGIFKGVEDRGARGKIADTTSAAIYATSDWKVKLIRQEEIACF
RRQMGIKIRGEDIADPMESFVDMPQAGPGQDAALTRRILLKNVEESAWKE
PTPVQMQAVPVLVAGRDLLAAAPTGSGKTAAFLMPIILRLGGNCADAKSM
RGVRAILLAPTRELAAQIHRDIVRLLQGRKMRVCLLTKGGVVKAAAASGL
TGYDMIISTPMRLVKLLREGSVSLATVEMVVLDEADKLFDAGAAHSSSDN
SFVGQVDEVLAACSHRDVQRALFSATIGQNVKELAESVLRNPVYLTVGTE
NAGAAEIDQRLVYVGKEEGKLLAIRQLVQDGLRPPVLIFLQSKDRAK
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mRNA from alignment at H-elongata_contig1484:14191..15925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1484.3257.1 ID=mRNA_H-elongata_contig1484.3257.1|Name=mRNA_H-elongata_contig1484.3257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1735bp|location=Sequence derived from alignment at H-elongata_contig1484:14191..15925+ (Himanthalia elongata Himel1 dioecious)
ATGTCATCCAACCATATTCTAGAAATACTTACTAGTGGTGCGGAATTTGG AGAGAGAGCTCGAAAGTCTAGCAAGGCGAAGACTCGCAACTCAAGAAACG AAAGGCTCGAACTGCACGGTAATAACTTACCCTTCAATTTCTTCGCTCCG GCTGCCAACACCGAAACCAAAAGAAGACGAGAGTCTACCGAAGGTGCAAG GACGACCACTTCACCAGTCAGCGCACCTGATACAGTTGTTGATCAAGCTG AAGCTGGCGTTGATGTCCAGAGCAACATCTGCCGTGGATCCCTGAAGTTG AATACTGATACAGGGCCTGGACTAGGTATATTCAAAGGCGTTGAGGACCG AGGTGCCCGAGGGAAAATAGCGGATACAACCTCCGCTGCGATTTACGCAA CATCCGATTGGAAGGTAAAATTGATTCGACAAGAAGAGATTGCTTGCTTC AGGAGGCAGATGGGAATCAAGATAAGGGGAGAGGATATCGCGGACCCAAT GGAGTCTTTTGTTGACATGCCTCAAGCAGGACCTGGGCAAGACGCTGCCT TGACCCGACGGATACTCCTCAAGAACGTGGAGGAATCGGCGTGGAAAGAA CCCACCCCTGTCCAAATGCAGGCAGTGCCAGTCCTCGTTGCCGGGCGGGA CCTTCTTGCGGCGGCACCTACTGGTTCAGGCAAGACCGCCGCATTCCTCA TGCCCATTATTCTGAGACTGGGGGGAAATTGCGCAGATGCTAAATCGATG CGTGGGGTGCGAGCTATCTTGCTGGCGCCAACACGCGAATTGGCGGCCCA GATCCATCGGGACATTGTTCGCCTTTTGCAGGGAAGGAAGATGCGCGTTT GTCTCTTGACCAAAGGAGGCGTAGTCAAAGCGGCGGCCGCAAGCGGTTTG ACGGGCTATGACATGATTATATCAACCCCAATGCGACTTGTAAAATTGCT CAGAGAAGGGTCAGTCTCTCTAGCAACAGTGGAGATGGTGGTGCTGGACG AGGCAGACAAGCTGTTCGACGCAGGAGCCGCACACAGCAGCAGCGATAAC TCATTTGTTGGGCAAGTGGACGAGGTGCTGGCAGCCTGCTCCCATCGAGA TGTCCAAAGGGCTTTATTCAGCGCCACAATTGGGCAAAACGTGAGGAAAT CGGTTGACTCCACGCCTCATGAGTATGCTGTCACCGGATAATCACTTCCG AGACAGGGTACCTTAATCTGCCTTGAAGTGCGGGGCCCAATGCTGTACGT TATTTACTATTACTTTCCCTCGGATCCGTTAACAAAAAGATAGAGGGTGG CGTTGACAATCCCAGAGGGATAGCGAAAAACACCCGCTTACATAACAAAA GCTTTCAGCCCACAACAAGTTTAAGGCCCATCTTTAAATACCCTTCTTGA TTTCTGCAATGGAAGGGTCCGCCGCTGGCAAGACACAAGAGGTCAACAGT ACGAGTATTATTTTTTAGTTTCAGTAAACTAGCATAGATAAATCCTTTAC CCGAGGTTTAAAGTTCCCCCGTTTGATATGCCAGGTGAAGGAGCTTGCGG AGAGTGTCCTTCGCAACCCGGTGTATCTCACCGTGGGAACTGAAAATGCC GGAGCAGCAGAAATCGACCAGCGCCTCGTGTACGTGGGCAAGGAAGAGGG CAAGTTATTAGCTATCCGGCAACTGGTTCAAGATGGCCTACGCCCTCCCG TTCTGATTTTTTTGCAGTCCAAAGATCGCGCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1484:14191..15925+

>mRNA_H-elongata_contig1484.3257.1 ID=mRNA_H-elongata_contig1484.3257.1|Name=mRNA_H-elongata_contig1484.3257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2682bp|location=Sequence derived from alignment at H-elongata_contig1484:14191..15925+ (Himanthalia elongata Himel1 dioecious)
ATGTCATCCAACCATATTCTAGAAATACTTACTAGTGGTGCGGAATTTGG
AGAGAGAGCTCGAAAGTCTAGCAAGGCGAAGACTCGCAACTCAAGAAACG
AAAGGCTCGAACTGCACGGTAATAACTTACCCTTCAATTTCTTCGCTCCG
GCTGCCAACACCGAAACCAAAAGAAGACGAGAGTCTACCGAAGGTGCAAG
GACGACCACTTCACCAGTCAGCGCACCTGATACAGTTGTTGATCAAGCTG
AAGCTGGCGTTGATGTCCAGAGCAACATCTGCCGTGGATCCCTGAAGTTG
AATACTGATACAGGGCCTGGACTAGGTATATTCAAAGGCGTTGAGGACCG
AGGTGCCCGAGGGAAAATAGCGGATACAACCTCCGCTGCGATTTACGCAA
CATCCGATTGGAAGGTAAAATTGATTCGACAAGAAGAGATTGCTTGCTTC
AGGAGGCAGATGGGAATCAAGATAAGGGGAGAGGATATCGCGGACCCAAT
GGAGTCTTTTGTTGACATGCCTCAAGCAGGACCTGGGCAAGACGCTGCCT
TGACCCGACGGATACTCCTCAAGAACGTGGAGGAATCGGCGTGGAAAGAA
CCCACCCCTGTCCAAATGCAGGCAGTGCCAGTCCTCGTTGCCGGGCGGGA
CCTTCTTGCGGCGGCACCTACTGGTTCAGGCAAGACCGCCGCATTCCTCA
TGCCCATTATTCTGAGACTGGGGGGAAATTGCGCAGATGCTAAATCGATG
CGTGGGGTGCGAGCTATCTTGCTGGCGCCAACACGCGAATTGGCGGCCCA
GATCCATCGGGACATTGTTCGCCTTTTGCAGGGAAGGAAGATGCGCGTTT
GTCTCTTGACCAAAGGAGGCGTAGTCAAAGCGGCGGCCGCAAGCGGTTTG
ACGGGCTATGACATGATTATATCAACCCCAATGCGACTTGTAAAATTGCT
CAGAGAAGGGTCAGTCTCTCTAGCAACAGTGGAGATGGTGGTGCTGGACG
AGGCAGACAAGCTGTTCGACGCAGGAGCCGCACACAGCAGCAGCGATAAC
TCATTTGTTGGGCAAGTGGACGAGGTGCTGGCAGCCTGCTCCCATCGAGA
TGTCCAAAGGGCTTTATTCAGCGCCACAATTGGGCAAAACATGTCATCCA
ACCATATTCTAGAAATACTTACTAGTGGTGCGGAATTTGGAGAGAGAGCT
CGAAAGTCTAGCAAGGCGAAGACTCGCAACTCAAGAAACGAAAGGCTCGA
ACTGCACGGTAATAACTTACCCTTCAATTTCTTCGCTCCGGCTGCCAACA
CCGAAACCAAAAGAAGACGAGAGTCTACCGAAGGTGCAAGGACGACCACT
TCACCAGTCAGCGCACCTGATACAGTTGTTGATCAAGCTGAAGCTGGCGT
TGATGTCCAGAGCAACATCTGCCGTGGATCCCTGAAGTTGAATACTGATA
CAGGGCCTGGACTAGGTATATTCAAAGGCGTTGAGGACCGAGGTGCCCGA
GGGAAAATAGCGGATACAACCTCCGCTGCGATTTACGCAACATCCGATTG
GAAGGTAAAATTGATTCGACAAGAAGAGATTGCTTGCTTCAGGAGGCAGA
TGGGAATCAAGATAAGGGGAGAGGATATCGCGGACCCAATGGAGTCTTTT
GTTGACATGCCTCAAGCAGGACCTGGGCAAGACGCTGCCTTGACCCGACG
GATACTCCTCAAGAACGTGGAGGAATCGGCGTGGAAAGAACCCACCCCTG
TCCAAATGCAGGCAGTGCCAGTCCTCGTTGCCGGGCGGGACCTTCTTGCG
GCGGCACCTACTGGTTCAGGCAAGACCGCCGCATTCCTCATGCCCATTAT
TCTGAGACTGGGGGGAAATTGCGCAGATGCTAAATCGATGCGTGGGGTGC
GAGCTATCTTGCTGGCGCCAACACGCGAATTGGCGGCCCAGATCCATCGG
GACATTGTTCGCCTTTTGCAGGGAAGGAAGATGCGCGTTTGTCTCTTGAC
CAAAGGAGGCGTAGTCAAAGCGGCGGCCGCAAGCGGTTTGACGGGCTATG
ACATGATTATATCAACCCCAATGCGACTTGTAAAATTGCTCAGAGAAGGG
TCAGTCTCTCTAGCAACAGTGGAGATGGTGGTGCTGGACGAGGCAGACAA
GCTGTTCGACGCAGGAGCCGCACACAGCAGCAGCGATAACTCATTTGTTG
GGCAAGTGGACGAGGTGCTGGCAGCCTGCTCCCATCGAGATGTCCAAAGG
GCTTTATTCAGCGCCACAATTGGGCAAAACGTGAAGGAGCTTGCGGAGAG
TGTCCTTCGCAACCCGGTGTATCTCACCGTGGGAACTGAAAATGCCGGAG
CAGCAGAAATCGACCAGCGCCTCGTGTACGTGGGCAAGGAAGAGGGCAAG
TTATTAGCTATCCGGCAACTGGTTCAAGATGGCCTACGCCCTCCCGTTCT
GATTTTTTTGCAGTCCAAAGATCGCGCGAAGGTGAAGGAGCTTGCGGAGA
GTGTCCTTCGCAACCCGGTGTATCTCACCGTGGGAACTGAAAATGCCGGA
GCAGCAGAAATCGACCAGCGCCTCGTGTACGTGGGCAAGGAAGAGGGCAA
GTTATTAGCTATCCGGCAACTGGTTCAAGATGGCCTACGCCCTCCCGTTC
TGATTTTTTTGCAGTCCAAAGATCGCGCGAAG
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