mRNA_H-elongata_contig147932.3233.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147932.3233.1
Unique NamemRNA_H-elongata_contig147932.3233.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.980e-23
Identity = 59/144 (40.97%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   31 GPSRCLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWR-DRTGPATRQ-----AQQLRSSRVPCLRFRQVSWDLPTSALAHARERFSCLEVLLLIGDIDTRVDNVVWPRGLKQLSFGNDFNQ 444
            GPSRCLDAF VALN+A +G  W+VST QLQL+S+ +C ACRSV T+ L    STP  ++  D    A R      ++++ ++RVP LR R+V+W L            S +E+ +L   ++  +D  VW  G++ LS G  F+Q
Sbjct:   26 GPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQ 169          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.110e-19
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   31 GPSRCLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDR-TGPATRQAQQLRSSRVPCLRFRQVSWDLPTSALAHAR-ERFSCLEVLLLIGDIDTRVDN-VVWPRGLKQLSFGNDFNQ 444
            GPSRCLDA  +ALN+AS G+ W+ ST QLQLAS+  CA+CRS+  + L+ +  TPT +WR   T   TR  ++   +RVP +R R V+W LP  AL +   + +S +    L    D  +   + WP  L  L  G  FN+
Sbjct:    8 GPSRCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNR 147          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.240e-17
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   31 GPSRCLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDR-TGPATRQAQQLRSSRVPCLRFRQVSWDLPTSALAHAR-ERFSCLEVLLLIGDIDTRVDN-VVWPRGLKQLSFGNDFNQ 444
            GPSRCLDA  +ALN+AS G+ W+ ST QLQL S+  CAACRS+  + L+ +  TP  +WR   T   TR  ++   +RVP +R R V+W LP  AL +   + +S +    L    D  +   + WP  L     G  FN+
Sbjct:   39 GPSRCLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNR 178          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.170e-16
Identity = 58/165 (35.15%), Postives = 82/165 (49.70%), Query Frame = 1
Query:   31 GPSR--CLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDLPTSALAH----ARERFSCLEVLLLIGD---------------------IDTRVDNVVWPRGLKQLSFGNDFNQ 444
            GP+R  CL+A  VALNE  +GK W+ ST++LQLAS+ +C ACR+  TV L+     P  +      P     ++L  +RVP LR R+V+W++PT+A       A      LE     GD                      D  ++ V WP  L+ ++FG DFNQ
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPP-HPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQ 208          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.810e-16
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   31 GPSR--CLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDLPTSA-LAHARERFSCLEVLLLIGDIDTRVDNVVWPRGLK 414
            GP+R  CL+A  VALNE S+GK W+ ST++ QLAS+ +C ACR+  T+ L     TP  +      P     ++L  +RVP LR R+V+WD+PT+A L ++       + L  +   +  ++ V WPR LK
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPP-HPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLK 135          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.130e-16
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   61 VALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSS---------RVPCLRFRQVSWDLPTSALAHA-RERFSCLEVLLLIGDIDTR---VDNVVWPRGLKQLSFG 429
            VALNE   GK+W++ST QLQLASV +C ACRSV+T+ L  +  TP H+W D     +                  RVP  R R+V+W+LP S L+ A ++ F  LE +     ++      D V  PRGLK + FG
Sbjct:    2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFG 137          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.570e-15
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query:    7 PLLGLNC-VGPSR--CLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDLPTSALAHARERFSCLEV-LLLIGD-IDTRVDNVVWPRGLKQLSF 426
            PL   +C +GP+R  CL   TVALNE  +GK W+ ST++LQLAS+  C ACR   T+ L     TP  +      P+    ++L  +RVP LR R+ +W++PT++       F+ ++V  L  G      +D +VWPR LK + F
Sbjct:  121 PLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSP-HPKRLCGTRVPRLRARRATWNVPTAS-GMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF 263          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.360e-13
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   16 GLNCVGPSRCLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDLPTSA----LAHARERFSCLEVLLLIGDIDTRVDNVVWPRGLKQLSF-GNDFNQ 444
            G  C   S+ L    +ALNE  +GKRW+ ST++LQLAS+ +C ACR    + L     TP ++      P     +  R+ RVP LR R+V W++PT+     L  A +  +CL      G  +  ++ VVWP  LKQ+ F  ++FNQ
Sbjct:   11 GRRCSSGSKDL---ILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRT-RVPRLRARRVKWNMPTATELRTLMFALKDVNCLR---FGGVFNGSLEAVVWPPPLKQIIFFSSEFNQ 151          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.700e-13
Identity = 53/150 (35.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:    7 PLLGLNCVGPSR--CLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDLPTSALAHARERFSCLEVLLLIGDIDT------RVDNVVWPRGLKQLSFGN 432
            PL+     GP+   CL+A  VAL E  +GK W+ ST++LQLAS+ +C ACR+  T+ L      P  +     GP  +  ++L   RVP LR R V+W++PT+A     E  S +  L+ +  +D        ++ V WPR L+ ++F N
Sbjct:   22 PLIVYCSPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPP-QHPKRLSRRRVPRLRARHVTWNMPTAA-----ELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHN 165          
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Match: D8LSQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.090e-12
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  100 VSTRQLQLASVTYCAACRSVTTVLLHAKGSTPTHVWRDRTGP-ATRQAQQLRSSRVPCLRFRQVSWDLPTSALAHARE--RFSCLEVLLLIG-DIDTRVDNVVWPRGLK 414
            +ST  LQLAS+ +C ACRS +TV L     TP H+W   +GP A R A+  R+SRVP L  R+V W LP S L    +  + S L++L  +G + +  +  V  PRGLK
Sbjct:    1 MSTTALQLASLQFCVACRSASTVRLRIDTDTPRHLWAKDSGPQARRSARVCRASRVPALHAREVLWILPASMLNATSDSLKLSNLQLLSFVGANFNDSLSGVALPRGLK 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147932.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JFC0_9PHAE3.980e-2340.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT95_ECTSI4.110e-1941.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE9.240e-1739.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE4.170e-1635.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE4.810e-1638.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG83_9PHAE9.130e-1639.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE3.570e-1537.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE1.360e-1336.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.700e-1335.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSQ7_ECTSI1.090e-1243.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147932contigH-elongata_contig147932:866..1612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929876.5101728-CDS-H-elongata_contig147932:865..12791622929876.5101728-CDS-H-elongata_contig147932:865..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147932 866..1279 +
1691679191.880887-CDS-H-elongata_contig147932:865..12791691679191.880887-CDS-H-elongata_contig147932:865..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147932 866..1279 +
1622929876.5285466-CDS-H-elongata_contig147932:1411..16121622929876.5285466-CDS-H-elongata_contig147932:1411..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147932 1412..1612 +
1691679191.888947-CDS-H-elongata_contig147932:1411..16121691679191.888947-CDS-H-elongata_contig147932:1411..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147932 1412..1612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147932.3233.1prot_H-elongata_contig147932.3233.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147932 866..1612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147932.3233.1

>prot_H-elongata_contig147932.3233.1 ID=prot_H-elongata_contig147932.3233.1|Name=mRNA_H-elongata_contig147932.3233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
TRPLLGLNCVGPSRCLDAFTVALNEASEGKRWFVSTRQLQLASVTYCAAC
RSVTTVLLHAKGSTPTHVWRDRTGPATRQAQQLRSSRVPCLRFRQVSWDL
PTSALAHARERFSCLEVLLLIGDIDTRVDNVVWPRGLKQLSFGNDFNQPI
DRVAWPAALQQLRFGFCFDQLIDRVAWPEAIQHLQFGLSFNQPIHRVVWQ
AALQQ
back to top

mRNA from alignment at H-elongata_contig147932:866..1612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147932.3233.1 ID=mRNA_H-elongata_contig147932.3233.1|Name=mRNA_H-elongata_contig147932.3233.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig147932:866..1612+ (Himanthalia elongata Himel1 dioecious)
ACTCGACCCCTTCTTGGTTTAAATTGTGTAGGTCCCAGTCGATGCCTAGA CGCATTCACTGTCGCCCTCAACGAGGCCTCCGAAGGCAAGAGATGGTTCG TGTCGACAAGGCAACTGCAGCTCGCGTCCGTGACGTATTGCGCGGCCTGC CGAAGCGTAACCACGGTTTTGCTGCATGCAAAAGGTAGCACTCCAACGCA TGTATGGAGGGATAGAACCGGGCCGGCTACTCGCCAAGCGCAGCAGCTCC GCTCGTCTCGCGTGCCCTGCCTTCGATTCCGCCAGGTGTCGTGGGATTTG CCTACTTCAGCGCTGGCGCATGCGAGAGAGCGTTTCTCGTGCCTGGAGGT GCTACTCTTGATTGGCGATATAGATACCCGGGTAGACAACGTAGTATGGC CGCGTGGCCTGAAGGTGCTGGTGTTTTGGGACCGGTTCAATGAGCCTATC GACGGGGTGACGTTGCCGGTGTCCCTTCACCAGCTTCACTTCAGCTACTT CTTCAACCAGCCGATTGATAGCGTAGCATGGCCAGCGTCGCTCCAGCAGC TTTCCTTTGGCAATGATTTCAACCAGCCTATTGACAGGGTAGCATGGCCA GCGGCGCTCCAGCAGCTGCGCTTTGGCTTCTGCTTCGACCAGCTAATTGA CAGAGTAGCATGGCCGGAGGCGATCCAGCACCTACAGTTCGGCCTGAGCT TCAACCAGCCGATTCACAGGGTAGTATGGCAAGCGGCACTACAGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig147932:866..1612+

>mRNA_H-elongata_contig147932.3233.1 ID=mRNA_H-elongata_contig147932.3233.1|Name=mRNA_H-elongata_contig147932.3233.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig147932:866..1612+ (Himanthalia elongata Himel1 dioecious)
ACTCGACCCCTTCTTGGTTTAAATTGTGTAGGTCCCAGTCGATGCCTAGA
CGCATTCACTGTCGCCCTCAACGAGGCCTCCGAAGGCAAGAGATGGTTCG
TGTCGACAAGGCAACTGCAGCTCGCGTCCGTGACGTATTGCGCGGCCTGC
CGAAGCGTAACCACGGTTTTGCTGCATGCAAAAGGTAGCACTCCAACGCA
TGTATGGAGGGATAGAACCGGGCCGGCTACTCGCCAAGCGCAGCAGCTCC
GCTCGTCTCGCGTGCCCTGCCTTCGATTCCGCCAGGTGTCGTGGGATTTG
CCTACTTCAGCGCTGGCGCATGCGAGAGAGCGTTTCTCGTGCCTGGAGGT
GCTACTCTTGATTGGCGATATAGATACCCGGGTAGACAACGTAGTATGGC
CGCGTGGCCTGAAGACTCGACCCCTTCTTGGTTTAAATTGTGTAGGTCCC
AGTCGATGCCTAGACGCATTCACTGTCGCCCTCAACGAGGCCTCCGAAGG
CAAGAGATGGTTCGTGTCGACAAGGCAACTGCAGCTCGCGTCCGTGACGT
ATTGCGCGGCCTGCCGAAGCGTAACCACGGTTTTGCTGCATGCAAAAGGT
AGCACTCCAACGCATGTATGGAGGGATAGAACCGGGCCGGCTACTCGCCA
AGCGCAGCAGCTCCGCTCGTCTCGCGTGCCCTGCCTTCGATTCCGCCAGG
TGTCGTGGGATTTGCCTACTTCAGCGCTGGCGCATGCGAGAGAGCGTTTC
TCGTGCCTGGAGGTGCTACTCTTGATTGGCGATATAGATACCCGGGTAGA
CAACGTAGTATGGCCGCGTGGCCTGAAGCAGCTTTCCTTTGGCAATGATT
TCAACCAGCCTATTGACAGGGTAGCATGGCCAGCGGCGCTCCAGCAGCTG
CGCTTTGGCTTCTGCTTCGACCAGCTAATTGACAGAGTAGCATGGCCGGA
GGCGATCCAGCACCTACAGTTCGGCCTGAGCTTCAACCAGCCGATTCACA
GGGTAGTATGGCAAGCGGCACTACAGCAGCAGCTTTCCTTTGGCAATGAT
TTCAACCAGCCTATTGACAGGGTAGCATGGCCAGCGGCGCTCCAGCAGCT
GCGCTTTGGCTTCTGCTTCGACCAGCTAATTGACAGAGTAGCATGGCCGG
AGGCGATCCAGCACCTACAGTTCGGCCTGAGCTTCAACCAGCCGATTCAC
AGGGTAGTATGGCAAGCGGCACTACAGCAG
back to top