mRNA_H-elongata_contig146251.3154.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146251.3154.1
Unique NamemRNA_H-elongata_contig146251.3154.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 7.740e-32
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            QWFWEAI SF+PEEQG+FLKFVTSCSRPPLLGFERL+PPIC+QRVP GD GRLPSSATCMNLLK+
Sbjct: 1305 QWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEGRLPSSATCMNLLKL 1369          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A7S2G4K7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4K7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-22
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNG--RLPSSATCMNLLKV 195
            QWFW+ +   TP++QG FLKFVTS  R PLLGFE + PPIC+Q+VP G++G  RLPS+ATCMNLLK+
Sbjct:   89 QWFWQVLRELTPQQQGDFLKFVTSSPRQPLLGFEYMQPPICIQKVPLGEDGPSRLPSAATCMNLLKL 155          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.220e-22
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    4 WFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNG--RLPSSATCMNLLKV 195
            WFWEA+ S+TP+EQ  FL FVTSCSR PLLGF+ L+PP+C+QRVP    G  RLPSSATCMNLLK+
Sbjct: 1196 WFWEALRSYTPDEQAAFLMFVTSCSRQPLLGFQHLNPPVCIQRVPLTTEGGERLPSSATCMNLLKL 1261          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-21
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    4 WFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNG-RLPSSATCMNLLKV 195
            WFW+ I +FTP +Q  FLKFVTSCSR PLLGF+ L PP+C+Q+V +G+ G +LPSSATCMNLLK+
Sbjct:  356 WFWDIIANFTPAQQALFLKFVTSCSRQPLLGFKHLSPPMCIQQVESGERGNKLPSSATCMNLLKL 420          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A1V9ZYX8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYX8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.740e-20
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            QWFWE +   T EE+G  LKF+TSCSR PLLGF++L P IC+Q+V   D+ RLPSSATCMNLLK+
Sbjct: 1532 QWFWEVVFELTSEERGELLKFITSCSRQPLLGFKQLQPLICIQQVRISDDERLPSSATCMNLLKL 1596          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A024GGC9_9STRA (HECT-type E3 ubiquitin transferase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GGC9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.420e-20
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    4 WFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            WFWE +   TP EQ R L+F+TS SRPPLLGF  L PP+C+Q+V   D+ RLPSSATCMNLLK+
Sbjct: 1009 WFWEILAEMTPNEQSRMLQFITSVSRPPLLGFRCLDPPLCIQQVRCDDDSRLPSSATCMNLLKL 1072          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A183IZS6_9BILA (HECT-type E3 ubiquitin transferase n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IZS6_9BILA)

HSP 1 Score: 85.5 bits (210), Expect = 6.870e-20
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    7 FWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            FW  + SFT E++ + LKFVTSCSRPPLLGF+ L+P  C+Q +PN +N RLP+SATCMNLLK+
Sbjct:   44 FWSVVRSFTEEQKKKLLKFVTSCSRPPLLGFKDLYPSFCIQLLPNVNN-RLPTSATCMNLLKL 105          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: T0RYM8_SAPDV (HECT-type E3 ubiquitin transferase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RYM8_SAPDV)

HSP 1 Score: 90.5 bits (223), Expect = 1.120e-19
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            QWFW+ +   +P+++G  LKF+TSCSR PLLGF++L P +C+Q+V   D+ RLPSSATCMNLLK+
Sbjct:  851 QWFWDIVADLSPDDRGELLKFITSCSRQPLLGFKQLQPLVCIQQVRISDDERLPSSATCMNLLKL 915          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A485LLW5_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLW5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-19
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            QWFWE +   TPE++G  L+F+TSCSR PLLGF++L P IC+Q+V   D+ RLPSSATCMNLLK+
Sbjct:  796 QWFWEIVAECTPEQRGDLLRFITSCSRQPLLGFKQLVPLICIQQVRIQDDERLPSSATCMNLLKL 860          
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Match: A0A3F2RBK9_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBK9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-19
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDNGRLPSSATCMNLLKV 195
            QWFWE +  F PE++   LKF+TSCSR PLLGF RL P IC+ +V   D+ RLPSSATCMNLLK+
Sbjct:  807 QWFWEIVNEFAPEDRAALLKFITSCSRQPLLGFSRLAPQICIHQVRVEDDDRLPSSATCMNLLKL 871          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146251.3154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM0_ECTSI7.740e-3287.69HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2G4K7_9STRA1.140e-2264.18HECT-type E3 ubiquitin transferase n=1 Tax=Florenc... [more]
W7TQY7_9STRA2.220e-2269.70HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A835YYA3_9STRA1.830e-2166.15HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A1V9ZYX8_9STRA1.740e-2064.62HECT-type E3 ubiquitin transferase n=1 Tax=Thraust... [more]
A0A024GGC9_9STRA4.420e-2064.06HECT-type E3 ubiquitin transferase n=2 Tax=Albugo ... [more]
A0A183IZS6_9BILA6.870e-2063.49HECT-type E3 ubiquitin transferase n=1 Tax=Sobolip... [more]
T0RYM8_SAPDV1.120e-1958.46HECT-type E3 ubiquitin transferase n=2 Tax=Saprole... [more]
A0A485LLW5_9STRA1.530e-1963.08HECT-type E3 ubiquitin transferase n=1 Tax=Aphanom... [more]
A0A3F2RBK9_9STRA1.530e-1963.08HECT-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146251contigH-elongata_contig146251:907..1101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue3.9e-27
Seed eggNOG ortholog2880.D7FKM0
KEGG koko:K10589
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0942@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.8328135-CDS-H-elongata_contig146251:906..11011622929869.8328135-CDS-H-elongata_contig146251:906..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146251 907..1101 -
1691679189.2251196-CDS-H-elongata_contig146251:906..11011691679189.2251196-CDS-H-elongata_contig146251:906..1101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146251 907..1101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146251.3154.1prot_H-elongata_contig146251.3154.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146251 907..1101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146251.3154.1

>prot_H-elongata_contig146251.3154.1 ID=prot_H-elongata_contig146251.3154.1|Name=mRNA_H-elongata_contig146251.3154.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
QWFWEAIVSFTPEEQGRFLKFVTSCSRPPLLGFERLHPPICVQRVPNGDN
GRLPSSATCMNLLKV
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mRNA from alignment at H-elongata_contig146251:907..1101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146251.3154.1 ID=mRNA_H-elongata_contig146251.3154.1|Name=mRNA_H-elongata_contig146251.3154.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig146251:907..1101- (Himanthalia elongata Himel1 dioecious)
CAGTGGTTCTGGGAGGCGATTGTGTCGTTCACTCCCGAGGAGCAAGGGCG ATTCCTGAAGTTCGTCACGTCCTGCTCGCGTCCTCCGCTGTTGGGCTTCG AGCGGCTACACCCGCCCATCTGCGTCCAGAGAGTGCCCAACGGGGACAAC GGGCGGCTGCCCTCCAGCGCCACGTGCATGAACCTTCTAAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig146251:907..1101-

>mRNA_H-elongata_contig146251.3154.1 ID=mRNA_H-elongata_contig146251.3154.1|Name=mRNA_H-elongata_contig146251.3154.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig146251:907..1101- (Himanthalia elongata Himel1 dioecious)
CAGTGGTTCTGGGAGGCGATTGTGTCGTTCACTCCCGAGGAGCAAGGGCG
ATTCCTGAAGTTCGTCACGTCCTGCTCGCGTCCTCCGCTGTTGGGCTTCG
AGCGGCTACACCCGCCCATCTGCGTCCAGAGAGTGCCCAACGGGGACAAC
GGGCGGCTGCCCTCCAGCGCCACGTGCATGAACCTTCTAAAGGTACAGTG
GTTCTGGGAGGCGATTGTGTCGTTCACTCCCGAGGAGCAAGGGCGATTCC
TGAAGTTCGTCACGTCCTGCTCGCGTCCTCCGCTGTTGGGCTTCGAGCGG
CTACACCCGCCCATCTGCGTCCAGAGAGTGCCCAACGGGGACAACGGGCG
GCTGCCCTCCAGCGCCACGTGCATGAACCTTCTAAAGGTA
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