mRNA_H-elongata_contig145187.3094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145187.3094.1
Unique NamemRNA_H-elongata_contig145187.3094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 5.590e-57
Identity = 84/115 (73.04%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFEAM 345
            NTI+SHRLVRLA++Q K GDMIEQLF GYFEEG+NIAD DVLLE+AQKAGV CTKE+L   EG++EVL+EY+KGVQ+ G++GVPY+++SREGSK+ +PLSGAQPPE F+EAFEA+
Sbjct:  106 NTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEAL 220          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.740e-52
Identity = 79/116 (68.10%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFEAMS 348
            NTI+SHRLVR A+ QGK G+MI+QLF  YFE+GRNIADVDVLLELA+KAGV CTK++L   EG+ EV+ EY+ G+ + GI+GVPYF+VSREGSK+ +PLSG QPP  F+EAFEA+S
Sbjct:  104 NTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALS 219          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.040e-28
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSC-TKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFEAM 345
            NTI SHRLV LA +QGK   +IE LF GYFE+G  ++ VD L+ +A+ AG+S   + +L S E +  V+ E     +  GITGVP+FV++R+G+K  L LSGAQP + F EAF+A+
Sbjct:  105 NTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 1.840e-23
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGV--SCTKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFE 339
            NT  SHRLV  A +QGK  +M+E+LF+ YFE+ R++ADV+ L E+A+K G+  + T  FL S EG+ EV  E  + +  S I+GVP+F++ +  +     LSGAQPPETF+E F+
Sbjct:  127 NTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNMGKS-ISGVPHFMIDKRYT-----LSGAQPPETFVELFD 235          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: UPI000564DB9A (DsbA family oxidoreductase n=1 Tax=Salinicoccus luteus TaxID=367840 RepID=UPI000564DB9A)

HSP 1 Score: 96.3 bits (238), Expect = 3.380e-22
Identity = 49/115 (42.61%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCT--KEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFE 339
            NT+ +HRL+++AE +GK G+ ++ L+  YF EGRN+A  +V+LE+AQ  G+  T  +E L S++ K  V+ E  +  +  G  GVP+FV++R+       +SGAQPPE F+EA E
Sbjct:   97 NTMDAHRLIKMAEAEGKDGEALDHLYHAYFTEGRNVARAEVILEIAQTIGMDTTAVEEMLGSNDYKETVISEQNEATRL-GAQGVPFFVINRKYG-----VSGAQPPEAFLEAIE 205          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A0A0KZG9_CUCSA (DSBA domain-containing protein n=3 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KZG9_CUCSA)

HSP 1 Score: 94.0 bits (232), Expect = 6.620e-21
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHSSE-GKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFE 339
            NT++SH+L+ LA +QG  K  D++E+L  GYF +G+ I D D LLE A+KAGV    EFL +++ G +EV  E EK   S  I+GVP++V++ +       LSGAQPPE F+ AF+
Sbjct:  169 NTLESHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADNGVKEVKEELEK--YSGKISGVPFYVINGKHK-----LSGAQPPEVFLRAFQ 277          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A5A7U4Z3_CUCME (DSBA domain-containing protein n=3 Tax=Cucumis melo TaxID=3656 RepID=A0A5A7U4Z3_CUCME)

HSP 1 Score: 93.2 bits (230), Expect = 9.910e-21
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHSSE-GKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFE 339
            NT+ SH+L+ LA +QG  K  D++E+L  GYF +G+ I D D LLE A+KAGV    EFL +++ G +EV  E EK   S  I+GVP++V++ +       LSGAQPPE F+ AF+
Sbjct:  153 NTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETADNGVKEVKEELEK--YSGKISGVPFYVINGKHK-----LSGAQPPEVFLRAFQ 261          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A1D1Z3D6_9ARAE (Uncharacterized protein ywbO n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z3D6_9ARAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.060e-19
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHS-SEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFEAMS 348
            +T+ SHRL+  A  QG  K   ++E+LF  YF +G+ I D  VLLE A+KAG+   +E L   S+G +EV  E E+   S  ITGVP+FV++  G +    LSG QPPE F+ AFEA++
Sbjct:   68 STLDSHRLITFAGTQGFDKQNCLVEELFVNYFTQGKYIGDRQVLLEAARKAGIEGAQELLEDPSKGLKEVQEELER--YSREITGVPHFVIN--GRRE---LSGGQPPEVFLRAFEAVA 179          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: UPI000900B408 (uncharacterized protein LOC109189068 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000900B408)

HSP 1 Score: 89.7 bits (221), Expect = 1.150e-19
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFLHS-SEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEAFE 339
            NT+ SHRL+  A +QG  K   ++E+LF GYF +G+ I D + L E A+K GV   +EFL   + G +EV  E ++   SS I+GVPY+V++ +       LSG QPPETF++AF+
Sbjct:  122 NTLDSHRLIYFAGKQGQDKQHKLVEELFIGYFTQGKYIGDKEFLKEAARKVGVEGAEEFLEDPNNGLKEVNEELQQ--YSSNISGVPYYVINGKSK-----LSGGQPPETFLQAFQ 230          
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Match: A0A3N4TK56_9STAP (Putative DsbA family dithiol-disulfide isomerase n=7 Tax=Salinicoccus TaxID=45669 RepID=A0A3N4TK56_9STAP)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-19
Identity = 45/113 (39.82%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVS--CTKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLSGAQPPETFIEA 333
            NT+ +HRL+++AE +GK G+ +E L+  YF EG N+AD +VLL++A+  G++    ++ L S++ K  V+ +  +  +  G  GVP+FV++R+       +SGAQPPE F+EA
Sbjct:   97 NTMDAHRLIKMAEGEGKDGEALEHLYHAYFTEGSNVADAEVLLDIAETLGMNRGTVEQKLASNDYKEAVISDQNEATRL-GAQGVPFFVINRKYG-----VSGAQPPEAFLEA 203          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145187.3094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN0_9PHAE5.590e-5773.04DSBA oxidoreductase n=1 Tax=Laminaria digitata Tax... [more]
A0A6H5KYU3_9PHAE2.740e-5268.10DSBA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YGU7_9STRA4.040e-2849.14Protein disulfide isomerase n=1 Tax=Tribonema minu... [more]
A0A433CYQ7_9FUNG1.840e-2346.96DSBA domain-containing protein n=3 Tax=Jimgerdeman... [more]
UPI000564DB9A3.380e-2242.61DsbA family oxidoreductase n=1 Tax=Salinicoccus lu... [more]
A0A0A0KZG9_CUCSA6.620e-2146.55DSBA domain-containing protein n=3 Tax=Benincaseae... [more]
A0A5A7U4Z3_CUCME9.910e-2146.55DSBA domain-containing protein n=3 Tax=Cucumis mel... [more]
A0A1D1Z3D6_9ARAE1.060e-1945.38Uncharacterized protein ywbO n=2 Tax=Anthurium amn... [more]
UPI000900B4081.150e-1943.97uncharacterized protein LOC109189068 n=3 Tax=Ipomo... [more]
A0A3N4TK56_9STAP2.220e-1939.82Putative DsbA family dithiol-disulfide isomerase n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145187contigH-elongata_contig145187:994..1627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.5e-40
Seed eggNOG ortholog2880.D8LHI5
EggNOG free text desc.DSBA-like thioredoxin domain
EggNOG OGs2QTH7@2759,COG2761@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-11_003940.1
Exons2
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.2852187-CDS-H-elongata_contig145187:993..12001622929861.2852187-CDS-H-elongata_contig145187:993..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145187 994..1200 -
1691679186.7418408-CDS-H-elongata_contig145187:993..12001691679186.7418408-CDS-H-elongata_contig145187:993..1200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145187 994..1200 -
1622929861.3030877-CDS-H-elongata_contig145187:1483..16271622929861.3030877-CDS-H-elongata_contig145187:1483..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145187 1484..1627 -
1691679186.7527452-CDS-H-elongata_contig145187:1483..16271691679186.7527452-CDS-H-elongata_contig145187:1483..1627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145187 1484..1627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145187.3094.1prot_H-elongata_contig145187.3094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145187 994..1627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145187.3094.1

>prot_H-elongata_contig145187.3094.1 ID=prot_H-elongata_contig145187.3094.1|Name=mRNA_H-elongata_contig145187.3094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
NTIKSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAG
VSCTKEFLHSSEGKREVLHEYEKGVQSSGITGVPYFVVSREGSKSVLPLS
GAQPPETFIEAFEAMS*
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mRNA from alignment at H-elongata_contig145187:994..1627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145187.3094.1 ID=mRNA_H-elongata_contig145187.3094.1|Name=mRNA_H-elongata_contig145187.3094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=634bp|location=Sequence derived from alignment at H-elongata_contig145187:994..1627- (Himanthalia elongata Himel1 dioecious)
AACACCATCAAATCTCACCGGCTGGTTCGCCTTGCCGAAGAACAGGGGAA GAGCGGTGACATGATCGAGCAGCTGTTCCAAGGGTATTTCGAGGAGGGCA GGAACATCGCTGATGTCGACGTGCTACTTGAACTCGCCCAAAAGGTGTAC ACCTCGCCATGTCGAGCGACGTGATGTAAAAAACATTGAAGTGGCGACCC GGTCGTGTGATTGTATGAACTGATTCTCGTAAGCTTCGGATGCGGAATGT TTCTAGAGGATGAGCGAAATACCTTGCGTACAGCGTCATTATCCCAGCAG TCATCTCAGAAGTACCACGCCCATTCGATTTTCGAGTGTCATTATTTCTT CACCCACCCTCTCATTTGCCCCTGCTATCCACATCCTTGCCCCATGTAAC CAACCCATCAAATGCAACATGACACAGGCTGGAGTTTCGTGCACCAAGGA ATTCCTTCACAGCTCAGAGGGGAAGCGAGAGGTCCTCCATGAGTACGAGA AGGGCGTTCAGTCTTCAGGCATCACTGGCGTGCCATACTTTGTCGTTTCG CGAGAAGGGAGCAAGAGCGTCCTCCCACTCTCGGGCGCGCAGCCTCCCGA GACATTCATTGAGGCTTTTGAAGCTATGTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig145187:994..1627-

>mRNA_H-elongata_contig145187.3094.1 ID=mRNA_H-elongata_contig145187.3094.1|Name=mRNA_H-elongata_contig145187.3094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig145187:994..1627- (Himanthalia elongata Himel1 dioecious)
AACACCATCAAATCTCACCGGCTGGTTCGCCTTGCCGAAGAACAGGGGAA
GAGCGGTGACATGATCGAGCAGCTGTTCCAAGGGTATTTCGAGGAGGGCA
GGAACATCGCTGATGTCGACGTGCTACTTGAACTCGCCCAAAAGAACACC
ATCAAATCTCACCGGCTGGTTCGCCTTGCCGAAGAACAGGGGAAGAGCGG
TGACATGATCGAGCAGCTGTTCCAAGGGTATTTCGAGGAGGGCAGGAACA
TCGCTGATGTCGACGTGCTACTTGAACTCGCCCAAAAGGCTGGAGTTTCG
TGCACCAAGGAATTCCTTCACAGCTCAGAGGGGAAGCGAGAGGTCCTCCA
TGAGTACGAGAAGGGCGTTCAGTCTTCAGGCATCACTGGCGTGCCATACT
TTGTCGTTTCGCGAGAAGGGAGCAAGAGCGTCCTCCCACTCTCGGGCGCG
CAGCCTCCCGAGACATTCATTGAGGCTTTTGAAGCTATGTCATAAGCTGG
AGTTTCGTGCACCAAGGAATTCCTTCACAGCTCAGAGGGGAAGCGAGAGG
TCCTCCATGAGTACGAGAAGGGCGTTCAGTCTTCAGGCATCACTGGCGTG
CCATACTTTGTCGTTTCGCGAGAAGGGAGCAAGAGCGTCCTCCCACTCTC
GGGCGCGCAGCCTCCCGAGACATTCATTGAGGCTTTTGAAGCTATGTCAT
AA
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