mRNA_H-elongata_contig145129.3091.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145129.3091.1
Unique NamemRNA_H-elongata_contig145129.3091.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145129.3091.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.830e-9
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   16 CVTERRERGVLPESVAKGRLEVATFLIQGIVQKHAGGERDRVDLSKVN 159
            CV+     G   ++V KGRLEVAT+L+QG V+K AGGERDRVDLSKV+
Sbjct:  369 CVSPGVGEGETSDAVVKGRLEVATYLLQGTVKKDAGGERDRVDLSKVD 416
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BLAST of mRNA_H-elongata_contig145129.3091.1 vs. uniprot
Match: D7G4G1_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G1_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.830e-9
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   16 CVTERRERGVLPESVAKGRLEVATFLIQGIVQKHAGGERDRVDLSKVN 159
            CV+     G   ++V KGRLEVAT+L+QG V+K AGGERDRVDLSKV+
Sbjct:  380 CVSPGVGEGQTSDAVGKGRLEVATYLLQGTVKKDAGGERDRVDLSKVD 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145129.3091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUW2_9PHAE1.830e-962.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4G1_ECTSI1.830e-962.50Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145129contigH-elongata_contig145129:1030..1188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7G4G1
KEGG koko:K09537
EggNOG free text desc.toxin transport
EggNOG OGsCOG2214@1,KOG0691@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.1224153-CDS-H-elongata_contig145129:1029..11881622929861.1224153-CDS-H-elongata_contig145129:1029..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145129 1030..1188 +
1691679186.6922953-CDS-H-elongata_contig145129:1029..11881691679186.6922953-CDS-H-elongata_contig145129:1029..1188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145129 1030..1188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145129.3091.1prot_H-elongata_contig145129.3091.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145129 1030..1188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145129.3091.1

>prot_H-elongata_contig145129.3091.1 ID=prot_H-elongata_contig145129.3091.1|Name=mRNA_H-elongata_contig145129.3091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MDDDRCVTERRERGVLPESVAKGRLEVATFLIQGIVQKHAGGERDRVDLS
KVN
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mRNA from alignment at H-elongata_contig145129:1030..1188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145129.3091.1 ID=mRNA_H-elongata_contig145129.3091.1|Name=mRNA_H-elongata_contig145129.3091.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig145129:1030..1188+ (Himanthalia elongata Himel1 dioecious)
ATGGACGATGATAGGTGCGTCACCGAAAGAAGGGAGCGAGGGGTTCTTCC
CGAGTCGGTCGCGAAGGGACGGCTGGAAGTGGCGACGTTTCTGATCCAGG
GCATCGTGCAGAAGCACGCGGGAGGCGAACGAGACCGAGTCGATCTCTCT
AAGGTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig145129:1030..1188+

>mRNA_H-elongata_contig145129.3091.1 ID=mRNA_H-elongata_contig145129.3091.1|Name=mRNA_H-elongata_contig145129.3091.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig145129:1030..1188+ (Himanthalia elongata Himel1 dioecious)
ATGGACGATGATAGGTGCGTCACCGAAAGAAGGGAGCGAGGGGTTCTTCC
CGAGTCGGTCGCGAAGGGACGGCTGGAAGTGGCGACGTTTCTGATCCAGG
GCATCGTGCAGAAGCACGCGGGAGGCGAACGAGACCGAGTCGATCTCTCT
AAGGTGAACATGGACGATGATAGGTGCGTCACCGAAAGAAGGGAGCGAGG
GGTTCTTCCCGAGTCGGTCGCGAAGGGACGGCTGGAAGTGGCGACGTTTC
TGATCCAGGGCATCGTGCAGAAGCACGCGGGAGGCGAACGAGACCGAGTC
GATCTCTCTAAGGTGAAC
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