mRNA_H-elongata_contig145009.3085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145009.3085.1
Unique NamemRNA_H-elongata_contig145009.3085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A6H5K6R3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6R3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.120e-13
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELVSGCVSFEATR 141
            MTVR+RLQR GRRNRPFYRVVVADSR+PRDGKFIELV G  +  ATR
Sbjct:    1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV-GTYNPLATR 46
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A660UMP8_9BACT (30S ribosomal protein S16 n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A660UMP8_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 8.780e-12
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            M VRIRLQR GRRNRPFYRVVVADSRSPRDGK+IE +
Sbjct:    1 MPVRIRLQRAGRRNRPFYRVVVADSRSPRDGKYIEKI 37
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A7C2PIK7_9BACT (30S ribosomal protein S16 n=2 Tax=Caldimicrobium sp. TaxID=2024963 RepID=A0A7C2PIK7_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 9.680e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIE 105
            M VRIRL RFGRRNRPFYRVVVADSR+PRDGK+I+
Sbjct:    1 MPVRIRLMRFGRRNRPFYRVVVADSRAPRDGKYID 35
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A524AQC4_9CHLR (30S ribosomal protein S16 n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A524AQC4_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 4.780e-11
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    7 VRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            V+IRL+R GRRN+PFYRVVVADSRSPRDGKFI+++
Sbjct:    2 VKIRLRRMGRRNKPFYRVVVADSRSPRDGKFIDII 36
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A836CM62_9STRA (Putative 30S ribosomal protein S16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM62_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.080e-11
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            M VR+RLQRFG +N+PFYRVV AD+R+PRDGKFIE+V
Sbjct:    1 MVVRLRLQRFGHKNQPFYRVVAADARAPRDGKFIEIV 37
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: I4BXZ6_ACEMN (30S ribosomal protein S16 n=6 Tax=Synergistaceae TaxID=649777 RepID=I4BXZ6_ACEMN)

HSP 1 Score: 60.8 bits (146), Expect = 6.790e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            M VRIRL R GR+ RPFYR+VVADSRSPRDGKFIE++
Sbjct:    1 MVVRIRLARHGRKKRPFYRLVVADSRSPRDGKFIEMI 37
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: UPI001BEE215D (30S ribosomal protein S16 n=1 Tax=Tenericutes bacterium TaxID=2231116 RepID=UPI001BEE215D)

HSP 1 Score: 60.8 bits (146), Expect = 6.960e-11
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELVSGCVSFEATRVP 147
            M V++RLQRFG + +PFYRVV ADSRSPRDG+FIE+V    +++A + P
Sbjct:    1 MAVKLRLQRFGSKKKPFYRVVAADSRSPRDGRFIEIVG---TYDAVKQP 46
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A7C5RW04_9BACT (30S ribosomal protein S16 n=1 Tax=Candidatus Calescamantes bacterium TaxID=2268183 RepID=A0A7C5RW04_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 7.180e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    7 VRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            VRIRLQRFGR+  PFYR+V ADSRSPRDGKFIE++
Sbjct:    2 VRIRLQRFGRKKDPFYRIVAADSRSPRDGKFIEII 36
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BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: A0A7Z9ZXM2_9BACT (30S ribosomal protein S16 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7Z9ZXM2_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 7.820e-11
Identity = 27/37 (72.97%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            M VRIRL R GRRNRPFYR+VVAD+++PRDGKF+E++
Sbjct:    1 MPVRIRLMRMGRRNRPFYRIVVADAKAPRDGKFVEII 37
[Close]
BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Match: UPI000402F478 (30S ribosomal protein S16 n=1 Tax=Thermodesulfobacterium hveragerdense TaxID=53424 RepID=UPI000402F478)

HSP 1 Score: 60.5 bits (145), Expect = 8.740e-11
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELV 111
            M VRIRL RFGR+ RPFYRVV ADSRSPRDGKF++++
Sbjct:    1 MPVRIRLMRFGRKKRPFYRVVAADSRSPRDGKFLDIL 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145009.3085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6R3_9PHAE4.120e-1380.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A660UMP8_9BACT8.780e-1286.4930S ribosomal protein S16 n=1 Tax=Candidatus Porib... [more]
A0A7C2PIK7_9BACT9.680e-1285.7130S ribosomal protein S16 n=2 Tax=Caldimicrobium s... [more]
A0A524AQC4_9CHLR4.780e-1180.0030S ribosomal protein S16 n=2 Tax=Dehalococcoidia ... [more]
A0A836CM62_9STRA5.080e-1175.68Putative 30S ribosomal protein S16 n=1 Tax=Tribone... [more]
I4BXZ6_ACEMN6.790e-1178.3830S ribosomal protein S16 n=6 Tax=Synergistaceae T... [more]
UPI001BEE215D6.960e-1159.1830S ribosomal protein S16 n=1 Tax=Tenericutes bact... [more]
A0A7C5RW04_9BACT7.180e-1180.0030S ribosomal protein S16 n=1 Tax=Candidatus Cales... [more]
A0A7Z9ZXM2_9BACT7.820e-1172.9730S ribosomal protein S16 n=1 Tax=Armatimonadetes ... [more]
UPI000402F4788.740e-1175.6830S ribosomal protein S16 n=1 Tax=Thermodesulfobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145009contigH-elongata_contig145009:510..662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D8LTT8
KEGG koko:K02959
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000003,GO:0000313,GO:0000314,GO:0003006,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0019866,GO:0019904,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein s16
EggNOG OGsCOG0228@1,KOG3419@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein S16 domain
Ec32 orthologEc-28_002810.1
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.588738-CDS-H-elongata_contig145009:509..6621622929860.588738-CDS-H-elongata_contig145009:509..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145009 510..662 -
1691679186.4933968-CDS-H-elongata_contig145009:509..6621691679186.4933968-CDS-H-elongata_contig145009:509..662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145009 510..662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145009.3085.1prot_H-elongata_contig145009.3085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145009 510..662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145009.3085.1

>prot_H-elongata_contig145009.3085.1 ID=prot_H-elongata_contig145009.3085.1|Name=mRNA_H-elongata_contig145009.3085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MTVRIRLQRFGRRNRPFYRVVVADSRSPRDGKFIELVSGCVSFEATRVPP
A
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mRNA from alignment at H-elongata_contig145009:510..662-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145009.3085.1 ID=mRNA_H-elongata_contig145009.3085.1|Name=mRNA_H-elongata_contig145009.3085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig145009:510..662- (Himanthalia elongata Himel1 dioecious)
ATGACGGTGCGCATACGCCTGCAGAGATTTGGCCGCCGCAATAGGCCCTT
CTATCGTGTAGTGGTCGCTGATTCCAGGTCTCCGCGGGATGGGAAATTCA
TCGAGCTTGTGAGTGGCTGTGTTAGTTTTGAGGCTACGAGGGTACCACCG
GCG
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Coding sequence (CDS) from alignment at H-elongata_contig145009:510..662-

>mRNA_H-elongata_contig145009.3085.1 ID=mRNA_H-elongata_contig145009.3085.1|Name=mRNA_H-elongata_contig145009.3085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig145009:510..662- (Himanthalia elongata Himel1 dioecious)
ATGACGGTGCGCATACGCCTGCAGAGATTTGGCCGCCGCAATAGGCCCTT
CTATCGTGTAGTGGTCGCTGATTCCAGGTCTCCGCGGGATGGGAAATTCA
TCGAGCTTGTGAGTGGCTGTGTTAGTTTTGAGGCTACGAGGGTACCACCG
GCGATGACGGTGCGCATACGCCTGCAGAGATTTGGCCGCCGCAATAGGCC
CTTCTATCGTGTAGTGGTCGCTGATTCCAGGTCTCCGCGGGATGGGAAAT
TCATCGAGCTTGTGAGTGGCTGTGTTAGTTTTGAGGCTACGAGGGTACCA
CCGGCG
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