mRNA_H-elongata_contig14468.3071.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14468.3071.1
Unique NamemRNA_H-elongata_contig14468.3071.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: D7FQ23_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ23_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 8.460e-91
Identity = 140/179 (78.21%), Postives = 154/179 (86.03%), Query Frame = 1 
Query:    7 RVACNASRRA-SMVRLLSSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            RVACNA+RR  S  R++SSS  ARAPA LP+L YDYGELEPAISGEIMKIHHTKHHQA        YINNLNAA+EKLA+AE KGDVTAI+QLQ AIKFNGGGHLNHSIFWKNLAP  KGGG+MV G L++MIE QY S+GELTEK+S+A+V VQGSGWGWLGYDKVNKRLAIATCANQ
Sbjct:    5 RVACNAARRVPSAGRMISSSAAARAPAVLPDLTYDYGELEPAISGEIMKIHHTKHHQA--------YINNLNAAMEKLADAEAKGDVTAILQLQAAIKFNGGGHLNHSIFWKNLAPVGKGGGEMVTGTLADMIEAQYHSMGELTEKMSAASVGVQGSGWGWLGYDKVNKRLAIATCANQ 175
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A835YN63_9STRA (Superoxide dismutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN63_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.820e-65
Identity = 109/170 (64.12%), Postives = 126/170 (74.12%), Query Frame = 1 
Query:   34 ASMVRLLSSSTTARAP-ATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            A   +LLS+  TA A  ATLPEL Y Y +LEP I G+IM+IHH+KHH          Y+ NLNAA+ KLA+AE KGDV AIVQLQGAIKFNGGGH+NHSIFWKNLAP   GGGK+  G L + I+ Q+GS+  L EKLS+AAV VQGSGWGWL YDKV  +LAIAT ANQ
Sbjct:   14 AQQAKLLSAGRTALASQATLPELGYGYKDLEPYIDGQIMEIHHSKHHNT--------YVTNLNAAMTKLADAEAKGDVGAIVQLQGAIKFNGGGHINHSIFWKNLAPTSAGGGKLECGSLKDAIDSQFGSLDGLKEKLSAAAVGVQGSGWGWLAYDKVACKLAIATTANQ 175
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A7S2D386_9STRA (Superoxide dismutase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D386_9STRA)

HSP 1 Score: 204 bits (518), Expect = 2.640e-63
Identity = 104/180 (57.78%), Postives = 130/180 (72.22%), Query Frame = 1 
Query:    1 MRRVACNASRRASMVRLLSSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            MR +  N S+   + R +S+S   R+  TLP+L Y YGELEP I+GEIM+IHH+KHH          Y+ NLN A EKLA AE  GDVTA+VQLQGAIKFNGGGHLNHSIFW+NLAP  KGGG +  G L+ +I+ ++GS   + EK+++A VAVQGSGWGWLGYDK +  +A+A CANQ
Sbjct:    8 MRSIVINTSKFRGISRSVSAS---RSIFTLPDLKYGYGELEPVITGEIMEIHHSKHHNT--------YVTNLNIASEKLAAAEAAGDVTAMVQLQGAIKFNGGGHLNHSIFWENLAPPSKGGGGVPEGELAALIDAKFGSFDAMKEKMTAATVAVQGSGWGWLGYDKTSGSVAVACCANQ 176
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A7S2SP93_9STRA (Superoxide dismutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP93_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.950e-62
Identity = 95/162 (58.64%), Postives = 123/162 (75.93%), Query Frame = 1 
Query:   55 SSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            S++ ++R+  TLP+L+Y YGELEP ISGEIM++HH+KHH          Y+ NLNA +E+LAEAE KGDVT IVQLQ AIKFNGGGHLNHSIFW+NLAP  KGGG    G L+ +I++++GS   + +K+++A VAVQGSGWGWLGYDK +  +A+  C NQ
Sbjct:   19 STTASSRSVFTLPDLSYGYGELEPVISGEIMELHHSKHHNT--------YVTNLNAGMEQLAEAEHKGDVTKIVQLQQAIKFNGGGHLNHSIFWENLAPPSKGGGGEPTGELAALIDKKFGSFDAMKDKMTAATVAVQGSGWGWLGYDKASDSVAVTCCFNQ 172
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A7S4M2S9_9EUKA (Superoxide dismutase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2S9_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 1.060e-60
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 1 
Query:   22 ASRRASMVRLLSSSTTA--RAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            ASRR+  +R+L  + +A      TLP+L YDYG LEPA+SGEIM IHHTKHHQ         Y+ NLNAA EK+ +A+ KGD+ A++ LQGAIKFNGGGH+NHSIFW+NL P  +GGG +  GPLS  I  ++GS+     K ++   A+QGSGWGWLGYDK   ++ IATCANQ
Sbjct:   12 ASRRSLALRVLPRAFSAVPSTSFTLPDLTYDYGALEPAVSGEIMTIHHTKHHQT--------YVTNLNAAYEKMLDAQAKGDIDAVIALQGAIKFNGGGHVNHSIFWQNLCPISEGGGVLQDGPLSAAITAEFGSLEAFQAKFNATTAAIQGSGWGWLGYDKAADKIKIATCANQ 178
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A151ZF37_9MYCE (Superoxide dismutase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZF37_9MYCE)

HSP 1 Score: 195 bits (496), Expect = 4.170e-60
Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 1 
Query:   64 TTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            +T+  P TLP+L YDYG LEP ISG+IMK+HH KHHQA        Y+ NLN +LEK A+AE+  DV  ++QLQ AIKFNGGGH+NHSIFWKNLAP+ + GG    GPL++ I +Q+GS+ +L +K+S+  +A+QGSGWGWLGYDK   +L I T ANQ
Sbjct:   17 STSGTPYTLPDLPYDYGALEPVISGDIMKLHHQKHHQA--------YVTNLNVSLEKYAKAEEAKDVATMIQLQSAIKFNGGGHVNHSIFWKNLAPKNQLGGVAPEGPLADAINKQFGSLDKLIDKMSATTLAIQGSGWGWLGYDKATDKLVITTQANQ 167
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: C1BRR0_CALRO (Superoxide dismutase n=2 Tax=Caligus rogercresseyi TaxID=217165 RepID=C1BRR0_CALRO)

HSP 1 Score: 194 bits (492), Expect = 1.790e-59
Identity = 94/167 (56.29%), Postives = 115/167 (68.86%), Query Frame = 1 
Query:   40 MVRLLSSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            M + LS    +R+  TLP+L Y YG LEP ISG IM++HH+KHHQ         Y+NNLNAA EKL+EA  K D++ ++ LQGA+KFNGGGHLNHSIFW NL P      K   G L E+I   +GS+G + EKLS + VA+QGSGWGWLGY K  K+L IATCANQ
Sbjct:    9 MPKRLSPLVVSRSKHTLPDLPYSYGALEPVISGAIMELHHSKHHQT--------YVNNLNAAEEKLSEAIAKNDISTVISLQGALKFNGGGHLNHSIFWTNLCPSDSSSSKEPSGQLLELINRDFGSLGAMKEKLSGSTVAIQGSGWGWLGYCKAEKKLKIATCANQ 167
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: F0YBC5_AURAN (Superoxide dismutase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBC5_AURAN)

HSP 1 Score: 191 bits (486), Expect = 1.450e-58
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = 1 
Query:   37 SMVRLLSSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            S  R ++  + AR   TLP L+YDYG LEP ISG+IM+IHH+KHH          Y+ NLNAA+E L +A   GDVTAIV  QGAIKFNGGGHLNHSIFW+NLAP  +GGG    G L+  I+ ++G V  +  KLS+  V VQGSGWGWLGY+K   +LA+ATC NQ
Sbjct:    8 STARAVALRSGARTKFTLPALSYDYGALEPVISGQIMEIHHSKHHNT--------YVTNLNAAVETLEQATAAGDVTAIVAAQGAIKFNGGGHLNHSIFWENLAPPSEGGGAPPTGALAAAIDAEFGGVDAMKTKLSAMTVGVQGSGWGWLGYNKATGKLALATCPNQ 167
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: A0A7S3EZA5_9EUKA (Superoxide dismutase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZA5_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 2.400e-58
Identity = 89/152 (58.55%), Postives = 109/152 (71.71%), Query Frame = 1 
Query:   85 TLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            TLP+L YDY  LEP +SGEIM IHHTKHHQ         Y+ NLNAA EKL +A+ KGD+ A + LQGAIKFNGGGH+NHSIFW+NL P   GGG++  GPL E I  ++GS+  L  K ++   A+QGSGWGWLG+DK   ++ IATCANQ
Sbjct:   30 TLPDLPYDYAALEPVVSGEIMTIHHTKHHQT--------YVTNLNAAYEKLLDAQAKGDIDAAIALQGAIKFNGGGHVNHSIFWQNLCPVSMGGGQLQDGPLKEAIMAEFGSLEALQAKFNATTAAIQGSGWGWLGFDKAAGKIKIATCANQ 173
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BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Match: F4QFT0_CAVFA (Superoxide dismutase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QFT0_CAVFA)

HSP 1 Score: 189 bits (481), Expect = 1.950e-57
Identity = 94/166 (56.63%), Postives = 118/166 (71.08%), Query Frame = 1 
Query:   43 VRLLSSSTTARAPATLPELNYDYGELEPAISGEIMKIHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKFNGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSSAAVAVQGSGWGWLGYDKVNKRLAIATCANQ 540
            VR   S++T+    TLP+L YDY  LEP I+GEIM+IHH KHHQA        Y+ NLNA+LEK A AE   DV A++ LQ AIKFNGGGH+NHSIFW NLAP+   GG    GPL++ I +Q+GS+ +  EK ++  VA+QGSGWGWLGYDK N +L I++CANQ
Sbjct:   15 VRYYGSTSTSY---TLPDLPYDYKALEPVIAGEIMEIHHKKHHQA--------YVTNLNASLEKYAAAESAKDVAAMIGLQSAIKFNGGGHVNHSIFWTNLAPKNAQGGVSPSGPLADAINQQFGSLEKFIEKFNAQTVAIQGSGWGWLGYDKANSKLVISSCANQ 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14468.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ23_ECTSI8.460e-9178.21Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YN63_9STRA2.820e-6564.12Superoxide dismutase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2D386_9STRA2.640e-6357.78Superoxide dismutase n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SP93_9STRA1.950e-6258.64Superoxide dismutase n=1 Tax=Rhizochromulina marin... [more]
A0A7S4M2S9_9EUKA1.060e-6055.43Superoxide dismutase n=1 Tax=Prymnesium polylepis ... [more]
A0A151ZF37_9MYCE4.170e-6057.86Superoxide dismutase n=1 Tax=Tieghemostelium lacte... [more]
C1BRR0_CALRO1.790e-5956.29Superoxide dismutase n=2 Tax=Caligus rogercresseyi... [more]
F0YBC5_AURAN1.450e-5856.55Superoxide dismutase n=1 Tax=Aureococcus anophagef... [more]
A0A7S3EZA5_9EUKA2.400e-5858.55Superoxide dismutase n=1 Tax=Haptolina ericina Tax... [more]
F4QFT0_CAVFA1.950e-5756.63Superoxide dismutase n=1 Tax=Cavenderia fasciculat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14468contigH-elongata_contig14468:4305..7848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue2.1e-70
Seed eggNOG ortholog2880.D7FQ23
Preferred nameSOD2
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
GOsGO:0000003,GO:0000302,GO:0000303,GO:0000305,GO:0001101,GO:0001306,GO:0001315,GO:0001505,GO:0001666,GO:0001836,GO:0001889,GO:0001976,GO:0002237,GO:0002376,GO:0002520,GO:0002682,GO:0003006,GO:0003007,GO:0003008,GO:0003013,GO:0003018,GO:0003032,GO:0003044,GO:0003068,GO:0003069,GO:0003070,GO:0003073,GO:0003085,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004784,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006091,GO:0006355,GO:0006357,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006801,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006970,GO:0006974,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007399,GO:0007507,GO:0007568,GO:0007571,GO:0007584,GO:0007610,GO:0007626,GO:0008015,GO:0008144,GO:0008150,GO:0008152,GO:0008217,GO:0008219,GO:0008285,GO:0008340,GO:0008630,GO:0008631,GO:0008637,GO:0009058,GO:0009266,GO:0009295,GO:0009314,GO:0009409,GO:0009410,GO:0009593,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009790,GO:0009791,GO:0009793,GO:0009838,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009908,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0010154,GO:0010212,GO:0010227,GO:0010259,GO:0010269,GO:0010332,GO:0010468,GO:0010506,GO:0010556,GO:0010646,GO:0010648,GO:0010660,GO:0010661,GO:0010821,GO:0010941,GO:0010942,GO:0012501,GO:0014823,GO:0015980,GO:0016020,GO:0016043,GO:0016209,GO:0016491,GO:0016721,GO:0016999,GO:0017000,GO:0017144,GO:0019219,GO:0019221,GO:0019222,GO:0019430,GO:0019825,GO:0019866,GO:0019899,GO:0022008,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030145,GO:0030154,GO:0030182,GO:0030334,GO:0030335,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031667,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032364,GO:0032496,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033043,GO:0033273,GO:0033483,GO:0033554,GO:0033591,GO:0033993,GO:0034021,GO:0034097,GO:0034284,GO:0034391,GO:0034393,GO:0034599,GO:0034614,GO:0034641,GO:0035150,GO:0035206,GO:0035296,GO:0035556,GO:0035690,GO:0035722,GO:0035900,GO:0035902,GO:0036094,GO:0036293,GO:0036296,GO:0036473,GO:0038001,GO:0040012,GO:0040017,GO:0042127,GO:0042221,GO:0042311,GO:0042391,GO:0042493,GO:0042542,GO:0042554,GO:0042592,GO:0042645,GO:0042742,GO:0042743,GO:0042802,GO:0042803,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043167,GO:0043169,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043473,GO:0043523,GO:0043524,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045333,GO:0045428,GO:0045429,GO:0045471,GO:0045595,GO:0045596,GO:0045597,GO:0045598,GO:0045599,GO:0045776,GO:0046677,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048066,GO:0048145,GO:0048147,GO:0048316,GO:0048367,GO:0048437,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048608,GO:0048660,GO:0048662,GO:0048666,GO:0048678,GO:0048699,GO:0048731,GO:0048732,GO:0048773,GO:0048856,GO:0048869,GO:0048878,GO:0050665,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050877,GO:0050880,GO:0050896,GO:0050931,GO:0051093,GO:0051094,GO:0051128,GO:0051147,GO:0051149,GO:0051150,GO:0051152,GO:0051171,GO:0051173,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051252,GO:0051259,GO:0051260,GO:0051262,GO:0051270,GO:0051272,GO:0051289,GO:0051602,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0051881,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055093,GO:0055114,GO:0060255,GO:0060548,GO:0061008,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070671,GO:0070887,GO:0071000,GO:0071236,GO:0071310,GO:0071345,GO:0071349,GO:0071361,GO:0071450,GO:0071451,GO:0071704,GO:0071840,GO:0072359,GO:0072593,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090567,GO:0097159,GO:0097190,GO:0097193,GO:0097237,GO:0097249,GO:0097305,GO:0097306,GO:0097746,GO:0097755,GO:0098542,GO:0098754,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0098869,GO:0099402,GO:1900239,GO:1900241,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901342,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902175,GO:1902176,GO:1902531,GO:1902532,GO:1902882,GO:1902883,GO:1903146,GO:1903201,GO:1903202,GO:1903409,GO:1903426,GO:1903428,GO:1903506,GO:1904018,GO:1904407,GO:1904705,GO:1904706,GO:1905063,GO:1905065,GO:1905459,GO:1905461,GO:1905915,GO:1905917,GO:1905930,GO:1905932,GO:1990748,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2000377,GO:2000379,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionSuperoxide dismutase
Ec32 orthologEc-01_007760.1
Exons3
Model size552
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14468.3071.1prot_H-elongata_contig14468.3071.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14468 4305..7848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.1291606-CDS-H-elongata_contig14468:4304..45021622929859.1291606-CDS-H-elongata_contig14468:4304..4502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 4305..4502 +
1691679185.9854457-CDS-H-elongata_contig14468:4304..45021691679185.9854457-CDS-H-elongata_contig14468:4304..4502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 4305..4502 +
1622929859.1502886-CDS-H-elongata_contig14468:7316..74571622929859.1502886-CDS-H-elongata_contig14468:7316..7457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 7317..7457 +
1691679185.9980524-CDS-H-elongata_contig14468:7316..74571691679185.9980524-CDS-H-elongata_contig14468:7316..7457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 7317..7457 +
1622929859.1726432-CDS-H-elongata_contig14468:7635..78481622929859.1726432-CDS-H-elongata_contig14468:7635..7848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 7636..7848 +
1691679186.0074506-CDS-H-elongata_contig14468:7635..78481691679186.0074506-CDS-H-elongata_contig14468:7635..7848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14468 7636..7848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14468.3071.1

>prot_H-elongata_contig14468.3071.1 ID=prot_H-elongata_contig14468.3071.1|Name=mRNA_H-elongata_contig14468.3071.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
MRRVACNASRRASMVRLLSSSTTARAPATLPELNYDYGELEPAISGEIMK
IHHTKHHQATMHDKEPAYINNLNAALEKLAEAEDKGDVTAIVQLQGAIKF
NGGGHLNHSIFWKNLAPECKGGGKMVPGPLSEMIEEQYGSVGELTEKLSS
AAVAVQGSGWGWLGYDKVNKRLAIATCANQVSE*
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mRNA from alignment at H-elongata_contig14468:4305..7848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14468.3071.1 ID=mRNA_H-elongata_contig14468.3071.1|Name=mRNA_H-elongata_contig14468.3071.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3544bp|location=Sequence derived from alignment at H-elongata_contig14468:4305..7848+ (Himanthalia elongata Himel1 dioecious)
ATGCGCAGAGTTGCCTGCAATGCATCGCGCCGCGCATCTATGGTGCGTCT
CCTCTCTTCTTCCACCACCGCTCGGGCTCCCGCAACGCTGCCAGAGTTGA
ACTACGATTACGGCGAGCTGGAGCCGGCCATCAGCGGGGAGATAATGAAG
ATTCACCACACCAAGCACCACCAGGCAACTATGCATGACAAAGAACCAGT
CAGACCACACAGCTTTACGTGGAATACCGTAGTGATATAGAGCTTAGGAT
CTGACAGCAATAGCCAGCACTTGGTTCTCTCGACCCTAGCTCATCTACTC
GCTCCTAATGCGAAGAGTTGTTCGGAAATCCAAACCTATGTACTGCAATT
CGAAGCATTGACGCAATATTCCTCTAAGTTGAGAACAAACTGCAACTTCC
TTGACACAGGGCAGACCAACGCTCGAGGCATTAACGTTCGCGCATTGGTA
GCTAGCTCTCTGTTTCCTATCACTCGAGGCAAAACCGACCTGAAAGGCGC
TGACCGTGCTCGTCGGGGAAGGCGAGACAAGACCATGCTTTAAACACGTC
ATACTGCTGTTATTGTTAGCCATCAAAGATGCTGGCCAGATCAGTCAGGT
CGGATGCACGAGTTACCACAATCAGTCGTCGCATTGTAGCAAGGTGTGTG
TGCGTGCGTGTGTGCGTACATGCATTCCTTGCTGACTCGTCATCAACTGT
GCAGCTGTTGTGGTAAAATATTTCGAACTGATCATCCCCGTCGTACCGGT
AGATGTACAGTATTATTAATTATTAATAATATAGTCTAATAGTATTATTT
TACGAAGGAGCGCACCAGAAGGATGGTGTGCAGAATGGTGCACTCGCCGC
CACACTATGCGCAGTACTGGCTCTATAATTCCTATCATAATTCCTATAAA
TGCAGATGCAGCTTAAGTTTTCATTTGGCGGTCCTTATATGACCCGACAA
ACTTACTAAGATGTTGTACTCAAGGTTAGTATTGTACACATTCGAACCTG
ACGATAGTTGGTCCCCTGGACTACACCTCTCATGGTGCTAAGAAGGTGTG
GATGTTCGGAGGATTGGAATGAGTTCAAGTTAAAAAATATATATATAAAT
ACTCGCCTGATCACATCATGTAAAATCGAGTACTCCTGCCCTGATGAGTT
CAAGGTTTAAAAAAAATAAAAATAATAACAGATCTACATGTATTATGTAG
TAGTATGTATTAGGCCCGTTTCAAACGGAGAGCTATTATTTTTTAGTTGA
ATTTCAAGATTAAAATGAACAAAAATACCGTCCATTTCAAACTGGCACAT
GATATGTGTATATTTTTTCAAACGAAGAAGCGGCGGATTTCAAACGAGAT
TGTTCTGCTTGCACCAGCAACACATCCCCATTAGCGAGCCTCTTTTCCCA
CGCCCGAAGCGAGCTTACATCAAGCATCAGCAGAATATCTTGCTATGAAC
CAGAGCCAGACCTCCGACCCGAAGCGCACGCAGACCGTGTCAGCTATCCC
CACCCTCCCATACTTTGCGAGGGATGTTGGAGCTGCCGGCAGCAGGCAGC
AGCAGTCAGGGTGGCAAAAAAAAATGAAAAAGGCAATTACTCCAAACATC
CACGCCTTCTTAGCACCATAAGAGGTGTAGTCCAGGGGACCAGCAATCGT
CAGGTTAGAATGTGGACATATTACTACCTTCGAGCACAAAATCGTCACAT
GTGATTAATCGTGTTCCCCAATTGTAAGTTCATCGATGTGTAATGGATTG
CGCTCTCAGCTCATCTCAAATGGGTTCGTGAGGGGATGTGTGATCACACG
CTATATATATATAATGCATTTAGTTCGAGCCATGAAAACATATTGTACGG
CACGCCTCACCCATTTGTAATATTAACACCTAGAGGCTGTTGATTCACAA
GTTCAGAGCATCGTGCTTGCAACTCAACTGGATAACTACGGAACACAATT
GAGTAAGCTATGCACCCATCAAAAATGGCAATCCCGCTATTGGGCTCAGA
GGGATAACGGTCAGCAGGTCACATCTATAGTAGGTGACACACCGCTACGC
GCCCATCAGGGGACAGGGGATGGTCCGAAATCGCCGCAAGCCTTCGTCGA
GTAGATCTAACCAAACAGGAGAAGCTAAGGTAATAACCATGTCACGACGA
TTACAGCGCCTCCTGTTCCTGTTCCTGTTCCTGTGTGAAGTCCTGTTACT
GTTACTAGTTCAAATATTCCGTAGCCCAGGATTTGAATCGCGAGGTACAG
ACACAGCTCCACCCACTCACTCACTCACTTTCCCAGCGCTCTCGGGAACA
AAGCCGAAGAGCGTATCAAAGTGTTCATAACGGTGGAGGCCTTGAGCTGT
GAAGTCGTCATCGTTATTAAAAATATATATGAACTCATTCAAACCCTCCG
AACATCCACATCCACATCCACTAGCCTTCTTAGCACCGTGGTGGCAATTG
ATATCGATTTACTGAGGCTCTGCAATCCATATATACTGTCGCGTGTTCTG
GCTGCCGCTATAGATCTTCAGCATTTTCCTCCCTGCAAAATATGTTTCGG
GGGGTTATTATATGTGTTGCTCCGCGCCGTCTTTCTCTGGTTCCTCGTAG
CGGAGGGGCGGTGTCATTTTGACTTCTAAGGGAGGGGCGGTGCCATATGG
ACACATCTCTCTCTCTCTCTCTCTATATATATATACAGCTGCTAGTGGCC
TAATTCTTGTACAAGAGCTACACATGGCGATGGCGTTACGAGCGAACAGG
TGGCAAGAACGCTTCTTTTAAGTATGAACGGTAGCTTCGTGATCTTCGCC
CACTCTTCGATGCCATCCGGTGGCTCTATTCACGACACCCCTTTCTCTCT
TGTTTTTTTAACACTCATTGGCACACAAACACGAACACTCATTTCGCACC
TCTTCCCCCTGTTGGGGAAAAAGGCTCAATACCCAACCGATATAACATAA
GAGCAACAACAACAACCTGTGCGCGCACGGCCTTTTCCCTTGCTGGTCCA
CTACACGTGCAGGCCTACATCAACAACCTCAACGCCGCCTTGGAAAAACT
TGCGGAAGCCGAGGACAAGGGTGACGTCACGGCAATCGTGCAGCTGCAGG
GGGCGATCAAGTTCAACGGCGGTGGCCACCTTAATCACTCTATCTTTTGG
AAGGTGCAAAAAATAAAATAAATATATATACAGTATATATTTTCATGCTC
CCCCGGTCTAGAGCTACCGCCTCAATAAAGTCGAGACCTCTACACAGGTG
CGTGTCGGGCTAGAAATTGAGTCAGCTCGCTTCGCTCGCCCAAGACGCAA
ATCATTTTCCTGCTTTGTCGGTCACCGCCAGAACCTCGCTCCAGAATGTA
AAGGCGGCGGGAAGATGGTGCCCGGCCCTCTGTCAGAAATGATTGAGGAA
CAGTACGGGTCCGTCGGGGAGCTCACGGAGAAGCTCAGCTCGGCGGCAGT
CGCTGTTCAAGGGTCGGGGTGGGGATGGCTCGGCTACGACAAAGTCAACA
AGCGGTTAGCGATCGCCACCTGCGCCAACCAAGTGAGTGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig14468:4305..7848+

>mRNA_H-elongata_contig14468.3071.1 ID=mRNA_H-elongata_contig14468.3071.1|Name=mRNA_H-elongata_contig14468.3071.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1104bp|location=Sequence derived from alignment at H-elongata_contig14468:4305..7848+ (Himanthalia elongata Himel1 dioecious)
ATGCGCAGAGTTGCCTGCAATGCATCGCGCCGCGCATCTATGGTGCGTCT
CCTCTCTTCTTCCACCACCGCTCGGGCTCCCGCAACGCTGCCAGAGTTGA
ACTACGATTACGGCGAGCTGGAGCCGGCCATCAGCGGGGAGATAATGAAG
ATTCACCACACCAAGCACCACCAGGCAACTATGCATGACAAAGAACCAAT
GCGCAGAGTTGCCTGCAATGCATCGCGCCGCGCATCTATGGTGCGTCTCC
TCTCTTCTTCCACCACCGCTCGGGCTCCCGCAACGCTGCCAGAGTTGAAC
TACGATTACGGCGAGCTGGAGCCGGCCATCAGCGGGGAGATAATGAAGAT
TCACCACACCAAGCACCACCAGGCAACTATGCATGACAAAGAACCAGCCT
ACATCAACAACCTCAACGCCGCCTTGGAAAAACTTGCGGAAGCCGAGGAC
AAGGGTGACGTCACGGCAATCGTGCAGCTGCAGGGGGCGATCAAGTTCAA
CGGCGGTGGCCACCTTAATCACTCTATCTTTTGGAAGGCCTACATCAACA
ACCTCAACGCCGCCTTGGAAAAACTTGCGGAAGCCGAGGACAAGGGTGAC
GTCACGGCAATCGTGCAGCTGCAGGGGGCGATCAAGTTCAACGGCGGTGG
CCACCTTAATCACTCTATCTTTTGGAAGAACCTCGCTCCAGAATGTAAAG
GCGGCGGGAAGATGGTGCCCGGCCCTCTGTCAGAAATGATTGAGGAACAG
TACGGGTCCGTCGGGGAGCTCACGGAGAAGCTCAGCTCGGCGGCAGTCGC
TGTTCAAGGGTCGGGGTGGGGATGGCTCGGCTACGACAAAGTCAACAAGC
GGTTAGCGATCGCCACCTGCGCCAACCAAGTGAGTGAATGAAACCTCGCT
CCAGAATGTAAAGGCGGCGGGAAGATGGTGCCCGGCCCTCTGTCAGAAAT
GATTGAGGAACAGTACGGGTCCGTCGGGGAGCTCACGGAGAAGCTCAGCT
CGGCGGCAGTCGCTGTTCAAGGGTCGGGGTGGGGATGGCTCGGCTACGAC
AAAGTCAACAAGCGGTTAGCGATCGCCACCTGCGCCAACCAAGTGAGTGA
ATGA
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