mRNA_H-elongata_contig144603.3060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144603.3060.1
Unique NamemRNA_H-elongata_contig144603.3060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A6H5JEA8_9PHAE (PWWP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA8_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.870e-58
Identity = 94/121 (77.69%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:   16 NQALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQ-DGIMRRVSRGNKRMSRAIKMGMKGLRVACERLGSERDPNAPHNRPKF 375
            NQALHVRC+STSEIVWARLHGFPWWPALVVKP+G GFQRSL E GDRLVVFMNE   FRV+HRFC+P++GT++ DG+MRR SR N+RM+RAIKM  KGLRVA ER GS+ DPNAPHNRP F
Sbjct:  798 NQALHVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQRSLLEAGDRLVVFMNEQQHFRVNHRFCKPYVGTTKHDGVMRRASRNNRRMARAIKMATKGLRVAHERFGSDGDPNAPHNRPNF 918
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-18
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 QDLATNQALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLE 141
            QDLATNQAL VRC+STSEIVWARLHGFPWWPALVVKP+G GFQ + +
Sbjct: 1506 QDLATNQALRVRCSSTSEIVWARLHGFPWWPALVVKPEGVGFQMATK 1552
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A7S2BI97_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI97_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.370e-11
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   10 ATNQALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRGNKRMSR 282
            A + ++ V    TSE+VWAR+ G+PWWP+ V +P    F +++ E  + LVVF+ E  Q+ +      PF G  QD  M +  R  +R  R
Sbjct:   29 AIDPSVRVSSEPTSEMVWARVKGYPWWPSRVHRPRDPKFSQAMSERNEILVVFVGEAAQYHLPLEDTAPFTGDEQDSHMPKKDRHIQRSLR 119
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A7S3JYV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYV4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-8
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   58 VWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRGNKRMSRAIKMGMKGLRVA 318
            VWAR+ G+PWWPA    P    F ++LE    +L+VF+NE+  + +      PF G   D           RM ++IK   KGL++A
Sbjct: 1098 VWARIRGYPWWPAREYIPKSPHFAQALERRNHKLLVFVNESVMYLIDSNSVEPFTGLPDD----------PRMPKSIKQCAKGLQLA 1174
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A7S2CLH6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLH6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-7
Identity = 30/102 (29.41%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:   22 ALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRG---NKRMSRAIKMGMKGLRVA 318
            A+ +    T  ++WAR+ GFPWWPA +       F+R L+E  + L+VF+ E  ++ +      PF+G  +D  M +  +     K +  AI   +  +R A
Sbjct:  146 AVMIPSIGTQTMLWARVSGFPWWPARLHTALNPEFERVLKERSEVLIVFVGEAHKYHLPETSVAPFLGNDEDPHMPKQGKSPVTKKELQMAINTALSIIRTA 247
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A7S3ZNS7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNS7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-7
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   22 ALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRGNKRMSRAIK 291
            A+++    T E+VWAR+ G+PWWPA   +P    F+ +L+  G  L+VF+ E+ Q+ +       F G   D  + +  +   +++ AI+
Sbjct:  746 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQYFMPSSGLAEFSGVEGDVHLPKPGKATPQLAEAIR 835
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BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Match: A0A8J2X491_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X491_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.390e-7
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   22 ALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETGDRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRGNKRMSRAIK 291
            A+++    T E+VWAR+ G+PWWPA   +P    F+ +L+  G  L+VF+ E+ Q+ +       F G   D  + +  +   +++ AI+
Sbjct: 1284 AVYIPSKPTGELVWARIRGYPWWPARRHEPTRQDFKEALQARGRSLIVFVGESVQYFMPSSGLAEFSGVEGDVHLPKPGKATPQLAEAIR 1373
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144603.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JEA8_9PHAE4.870e-5877.69PWWP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRK0_ECTSI1.700e-1882.98Nucleosome/chromatin assembly factor group n=1 Tax... [more]
A0A7S2BI97_9STRA4.370e-1136.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JYV4_9STRA1.160e-835.63Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CLH6_9STRA1.080e-729.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZNS7_9STRA1.350e-730.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X491_9STRA1.390e-730.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144603contigH-elongata_contig144603:101..1211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144603.3060.1prot_H-elongata_contig144603.3060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144603 101..1211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.6999304-CDS-H-elongata_contig144603:100..2291622929857.6999304-CDS-H-elongata_contig144603:100..229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 101..229 +
1691679185.5731504-CDS-H-elongata_contig144603:100..2291691679185.5731504-CDS-H-elongata_contig144603:100..229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 101..229 +
1622929857.729157-CDS-H-elongata_contig144603:563..7251622929857.729157-CDS-H-elongata_contig144603:563..725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 564..725 +
1691679185.5836828-CDS-H-elongata_contig144603:563..7251691679185.5836828-CDS-H-elongata_contig144603:563..725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 564..725 +
1622929857.7451038-CDS-H-elongata_contig144603:1127..12111622929857.7451038-CDS-H-elongata_contig144603:1127..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 1128..1211 +
1691679185.5949101-CDS-H-elongata_contig144603:1127..12111691679185.5949101-CDS-H-elongata_contig144603:1127..1211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144603 1128..1211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144603.3060.1

>prot_H-elongata_contig144603.3060.1 ID=prot_H-elongata_contig144603.3060.1|Name=mRNA_H-elongata_contig144603.3060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
QDLATNQALHVRCTSTSEIVWARLHGFPWWPALVVKPDGAGFQRSLEETG
DRLVVFMNENDQFRVSHRFCRPFIGTSQDGIMRRVSRGNKRMSRAIKMGM
KGLRVACERLGSERDPNAPHNRPKF
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mRNA from alignment at H-elongata_contig144603:101..1211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144603.3060.1 ID=mRNA_H-elongata_contig144603.3060.1|Name=mRNA_H-elongata_contig144603.3060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1111bp|location=Sequence derived from alignment at H-elongata_contig144603:101..1211+ (Himanthalia elongata Himel1 dioecious)
CAGGACCTCGCCACAAATCAGGCCCTACACGTCCGCTGCACGTCCACCTC
GGAGATCGTGTGGGCCCGTCTCCATGGATTCCCTTGGTGGCCCGCCTTGG
TGGTGAAGCCTGACGGTGCCGGTTTCCAGGTTGGTTTGGGGGGGGGGGGG
GGGTATTCTTTTTTACGAGGTAATTTTAAAAAAAGGAGGGTAATAACTGA
TACCGTGGTTGCTCTAGAAAAATGTGGCTGGAGTGAGTGGTTGGTTTTCG
TCTGTTGCGATCGAGTCTCACGATAGACATAAGCTTTTTCTCCAGTCCTT
TTTTTTCTCTCTCCTTATCTGTGCATCTTTTTGGTTATATATTATTACAT
CATTACCTCATTCGTCGACAATGCGCCGCTGATCCCGTTTCCCGTTTGGG
GCTTAAACCTTTTTTATGATATCGGCTTGGTTACCTTTGACTGTGTGGAT
CCGCTTGGATCAGCGGAGTCTAGAGGAGACGGGCGACCGGCTCGTGGTGT
TTATGAACGAGAACGACCAGTTCCGGGTGAGCCACCGATTCTGCCGTCCG
TTCATCGGCACCAGCCAGGACGGCATCATGCGTCGCGTTAGCCGTGGCAA
CAAGAGAATGTCCAGGGCGATCAAGGTGACGGGACGACTCGACGACAAAC
TTGACTTGACTTGATTCGATTCCATTTGATCCCTTTTACCACCCAAGGCA
GTAAACTGTCTCGTAGACTGAGATGCCCTTTTGCGTGAGCCGTACGACTG
TCTGCCTAGTCTGCCTAGTGGTGCCCCCAGCCCTCGCAGTCTCCTCTCTT
CTGGCAGAAGCCGCGGACGAGAGGGTTTTCGTTCGCGGTCGGTGATGATA
CAATTGACGCCAACAAAGAAAAGCCTCCTTATCAGCATAACAACGGAGAG
GGGGGGCGATCCCGCGTTCTCCTTCCCTTAATATAATGTTACATTCTGAT
ATCGATACCAGTATTGGCTCATTCATTTGTACTTATCCCGCCGACCTAAC
GGTGCCTCGGCAAATCCCGGAGCGCAGATGGGCATGAAAGGACTGCGGGT
GGCCTGCGAGCGGCTAGGGAGCGAACGAGATCCAAACGCGCCGCACAACC
GCCCCAAGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig144603:101..1211+

>mRNA_H-elongata_contig144603.3060.1 ID=mRNA_H-elongata_contig144603.3060.1|Name=mRNA_H-elongata_contig144603.3060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig144603:101..1211+ (Himanthalia elongata Himel1 dioecious)
CAGGACCTCGCCACAAATCAGGCCCTACACGTCCGCTGCACGTCCACCTC
GGAGATCGTGTGGGCCCGTCTCCATGGATTCCCTTGGTGGCCCGCCTTGG
TGGTGAAGCCTGACGGTGCCGGTTTCCAGCAGGACCTCGCCACAAATCAG
GCCCTACACGTCCGCTGCACGTCCACCTCGGAGATCGTGTGGGCCCGTCT
CCATGGATTCCCTTGGTGGCCCGCCTTGGTGGTGAAGCCTGACGGTGCCG
GTTTCCAGCGGAGTCTAGAGGAGACGGGCGACCGGCTCGTGGTGTTTATG
AACGAGAACGACCAGTTCCGGGTGAGCCACCGATTCTGCCGTCCGTTCAT
CGGCACCAGCCAGGACGGCATCATGCGTCGCGTTAGCCGTGGCAACAAGA
GAATGTCCAGGGCGATCAAGCGGAGTCTAGAGGAGACGGGCGACCGGCTC
GTGGTGTTTATGAACGAGAACGACCAGTTCCGGGTGAGCCACCGATTCTG
CCGTCCGTTCATCGGCACCAGCCAGGACGGCATCATGCGTCGCGTTAGCC
GTGGCAACAAGAGAATGTCCAGGGCGATCAAGATGGGCATGAAAGGACTG
CGGGTGGCCTGCGAGCGGCTAGGGAGCGAACGAGATCCAAACGCGCCGCA
CAACCGCCCCAAGTTCATGGGCATGAAAGGACTGCGGGTGGCCTGCGAGC
GGCTAGGGAGCGAACGAGATCCAAACGCGCCGCACAACCGCCCCAAGTTC
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