mRNA_H-elongata_contig144563.3058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144563.3058.1
Unique NamemRNA_H-elongata_contig144563.3058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: D7FJY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.120e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 SRRPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQV 126
            SRRP RIILMRHAESEGNVDK VY+STPDHALKITE GKRQ 
Sbjct:   14 SRRPFRIILMRHAESEGNVDKCVYSSTPDHALKITERGKRQA 55
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: A0A6H5KR22_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR22_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-14
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 SRRPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQV 126
            SRRP RIILMRHAESEGNVDK +Y+STPDHALKITE GKRQ 
Sbjct:   65 SRRPFRIILMRHAESEGNVDKCMYSSTPDHALKITERGKRQA 106
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: UPI0018ACB664 (histidine phosphatase family protein n=1 Tax=Streptacidiphilus fuscans TaxID=2789292 RepID=UPI0018ACB664)

HSP 1 Score: 65.5 bits (158), Expect = 1.190e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVR 129
            RPRRI+L+RH ESEGNVD+ +Y   PDHALK+TE G+ Q R
Sbjct:    3 RPRRIVLLRHGESEGNVDESIYERVPDHALKLTERGREQAR 43
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: A0A4Z0HC46_9ACTN (Histidine phosphatase family protein n=1 Tax=Streptomyces palmae TaxID=1701085 RepID=A0A4Z0HC46_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 1.340e-11
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVR 129
            RPRRI+L+RH ESEGNVD  VY   PDHAL +TELG+RQ R
Sbjct:    3 RPRRIVLVRHGESEGNVDDTVYEREPDHALHLTELGRRQAR 43
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: UPI0004CA78A4 (histidine phosphatase family protein n=1 Tax=Streptomyces sp. NRRL F-5135 TaxID=1463858 RepID=UPI0004CA78A4)

HSP 1 Score: 65.5 bits (158), Expect = 1.340e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVRRGETR 144
            RPRRI+L+RH ESEGN D  VY   PDHAL++TE G+RQ  R  TR
Sbjct:    3 RPRRIVLVRHGESEGNADDSVYEREPDHALRLTETGRRQAERTGTR 48
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: UPI0012951CD6 (histidine phosphatase family protein n=1 Tax=Cumulibacter manganitolerans TaxID=1884992 RepID=UPI0012951CD6)

HSP 1 Score: 65.1 bits (157), Expect = 2.130e-11
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 SRRPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQV 126
            ++RP+RIIL+RH ESEGN+D  +Y + PDHAL +TELG+RQV
Sbjct:    4 AQRPQRIILVRHGESEGNIDDSLYETVPDHALHLTELGRRQV 45
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: A0A7M3M3I3_9ACTN (Histidine phosphatase family protein n=1 Tax=Streptomyces sp. SAJ15 TaxID=2011095 RepID=A0A7M3M3I3_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.010e-10
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVRRGETR 144
            RP RI+L+RH ESEGNVD  VY   PDHAL++TE G+RQ R    R
Sbjct:    3 RPHRIVLVRHGESEGNVDDTVYERVPDHALRLTERGRRQAREAGVR 48
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: UPI001CA7400D (histidine phosphatase family protein n=1 Tax=Streptomyces sp. PLK6-54 TaxID=2873382 RepID=UPI001CA7400D)

HSP 1 Score: 63.2 bits (152), Expect = 1.020e-10
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVRR 132
            RPRRI+L+RH ES+GN D  +Y   PDHAL++T+LG RQ RR
Sbjct:    3 RPRRIVLIRHGESQGNADDTIYARVPDHALELTDLGMRQARR 44
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: A0A6I6F5B9_9ACTN (Histidine phosphatase family protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A6I6F5B9_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 1.530e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 RPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVRR-GETRRA 150
            RPRRI+L+RH ESEGN D  VY   PDHAL++T+LG+RQ    GE  RA
Sbjct:    3 RPRRIVLVRHGESEGNADDTVYEREPDHALRLTDLGRRQAEETGERLRA 51
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BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Match: A0A1S4BHF5_TOBAC (phosphoglycerate mutase-like protein AT74 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4BHF5_TOBAC)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-10
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 SRRPRRIILMRHAESEGNVDKGVYTSTPDHALKITELGKRQVRR 132
            SR P+RIIL+RH ESEGNVDK +Y  TPDH +++TE GK Q ++
Sbjct:   15 SRLPKRIILVRHGESEGNVDKNIYAITPDHKVQLTEKGKEQSKK 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144563.3058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJY3_ECTSI1.120e-1588.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR22_9PHAE1.530e-1485.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI0018ACB6641.190e-1165.85histidine phosphatase family protein n=1 Tax=Strep... [more]
A0A4Z0HC46_9ACTN1.340e-1170.73Histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI0004CA78A41.340e-1163.04histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI0012951CD62.130e-1164.29histidine phosphatase family protein n=1 Tax=Cumul... [more]
A0A7M3M3I3_9ACTN1.010e-1060.87Histidine phosphatase family protein n=1 Tax=Strep... [more]
UPI001CA7400D1.020e-1061.90histidine phosphatase family protein n=1 Tax=Strep... [more]
A0A6I6F5B9_9ACTN1.530e-1061.22Histidine phosphatase family protein n=2 Tax=Strep... [more]
A0A1S4BHF5_TOBAC1.860e-1061.36phosphoglycerate mutase-like protein AT74 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144563contigH-elongata_contig144563:1259..1411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog2880.D7FJY3
EggNOG free text desc.phosphatase activity
EggNOG OGs28M0P@1,2QTHF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-10_000890.1
Exons1
Model size153
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.561845-UTR-H-elongata_contig144563:1258..12851622929857.561845-UTR-H-elongata_contig144563:1258..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144563 1259..1285 +
1691679185.5055532-UTR-H-elongata_contig144563:1258..12851691679185.5055532-UTR-H-elongata_contig144563:1258..1285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144563 1259..1285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.574264-CDS-H-elongata_contig144563:1285..14111622929857.574264-CDS-H-elongata_contig144563:1285..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144563 1286..1411 +
1691679185.5210075-CDS-H-elongata_contig144563:1285..14111691679185.5210075-CDS-H-elongata_contig144563:1285..1411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144563 1286..1411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144563.3058.1prot_H-elongata_contig144563.3058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144563 1286..1411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144563.3058.1

>prot_H-elongata_contig144563.3058.1 ID=prot_H-elongata_contig144563.3058.1|Name=mRNA_H-elongata_contig144563.3058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MRHAESEGNVDKGVYTSTPDHALKITELGKRQVRRGETRRA*
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mRNA from alignment at H-elongata_contig144563:1259..1411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144563.3058.1 ID=mRNA_H-elongata_contig144563.3058.1|Name=mRNA_H-elongata_contig144563.3058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig144563:1259..1411+ (Himanthalia elongata Himel1 dioecious)
AGCCGACGGCCACGGCGAATCATCCTCATGAGACACGCCGAGTCGGAGGG
GAACGTGGACAAGGGCGTGTACACCTCCACACCGGACCACGCGCTCAAGA
TCACCGAGCTCGGGAAGAGACAGGTGAGGCGAGGCGAGACGCGACGCGCG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig144563:1259..1411+

>mRNA_H-elongata_contig144563.3058.1 ID=mRNA_H-elongata_contig144563.3058.1|Name=mRNA_H-elongata_contig144563.3058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig144563:1259..1411+ (Himanthalia elongata Himel1 dioecious)
ATGAGACACGCCGAGTCGGAGGGGAACGTGGACAAGGGCGTGTACACCTC
CACACCGGACCACGCGCTCAAGATCACCGAGCTCGGGAAGAGACAGGTGA
GGCGAGGCGAGACGCGACGCGCGTGAATGAGACACGCCGAGTCGGAGGGG
AACGTGGACAAGGGCGTGTACACCTCCACACCGGACCACGCGCTCAAGAT
CACCGAGCTCGGGAAGAGACAGGTGAGGCGAGGCGAGACGCGACGCGCGT
GA
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