mRNA_H-elongata_contig14443.3051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14443.3051.1
Unique NamemRNA_H-elongata_contig14443.3051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14443.3051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14443contigH-elongata_contig14443:3547..4030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.6468885-CDS-H-elongata_contig14443:3546..38851622929856.6468885-CDS-H-elongata_contig14443:3546..3885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14443 3547..3885 +
1691679185.1028755-CDS-H-elongata_contig14443:3546..38851691679185.1028755-CDS-H-elongata_contig14443:3546..3885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14443 3547..3885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.6645033-UTR-H-elongata_contig14443:3885..40301622929856.6645033-UTR-H-elongata_contig14443:3885..4030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14443 3886..4030 +
1691679185.1130507-UTR-H-elongata_contig14443:3885..40301691679185.1130507-UTR-H-elongata_contig14443:3885..4030Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14443 3886..4030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14443.3051.1prot_H-elongata_contig14443.3051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14443 3547..3885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14443.3051.1

>prot_H-elongata_contig14443.3051.1 ID=prot_H-elongata_contig14443.3051.1|Name=mRNA_H-elongata_contig14443.3051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
VADTTGVEASTPADNNTVDTHQCYRVQYSARDIVAKQGEYACYRAQPFAY
RIKSDKNPCRRLRLRRISDHIRYGTFVRFITYRIRYKTQKHNYAGGGVGR
RKGCLLSIHRPA*
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mRNA from alignment at H-elongata_contig14443:3547..4030+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14443.3051.1 ID=mRNA_H-elongata_contig14443.3051.1|Name=mRNA_H-elongata_contig14443.3051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=484bp|location=Sequence derived from alignment at H-elongata_contig14443:3547..4030+ (Himanthalia elongata Himel1 dioecious)
GTTGCCGACACCACGGGCGTGGAAGCCTCGACGCCTGCAGACAACAACAC
AGTGGACACGCACCAATGTTACAGAGTACAGTATTCCGCACGAGACATCG
TCGCTAAACAGGGGGAATACGCTTGCTACAGAGCTCAGCCGTTCGCGTAT
CGTATAAAATCTGATAAAAATCCGTGTCGACGATTAAGATTAAGACGAAT
ATCTGACCATATTAGATACGGTACGTTCGTCAGGTTTATCACATACCGTA
TCCGATATAAGACACAAAAACATAATTATGCTGGTGGGGGTGTCGGACGG
CGCAAAGGCTGCCTTCTCTCAATCCATCGCCCAGCCTAGGCTCGCGTGTG
AAGGGAAAGGTTAGCAAGACTAGGGCGGAAATTATTTGTCATGTAAAGGT
TAGCAAGACTAAGGCCTGGCCGGGGTAGGCGACAGAAGATAATACAGCAC
CAGTACATAATATGTTAACATGGCCATGAATTAT
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Coding sequence (CDS) from alignment at H-elongata_contig14443:3547..4030+

>mRNA_H-elongata_contig14443.3051.1 ID=mRNA_H-elongata_contig14443.3051.1|Name=mRNA_H-elongata_contig14443.3051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig14443:3547..4030+ (Himanthalia elongata Himel1 dioecious)
GTTGCCGACACCACGGGCGTGGAAGCCTCGACGCCTGCAGACAACAACAC
AGTGGACACGCACCAATGTTACAGAGTACAGTATTCCGCACGAGACATCG
TCGCTAAACAGGGGGAATACGCTTGCTACAGAGCTCAGCCGTTCGCGTAT
CGTATAAAATCTGATAAAAATCCGTGTCGACGATTAAGATTAAGACGAAT
ATCTGACCATATTAGATACGGTACGTTCGTCAGGTTTATCACATACCGTA
TCCGATATAAGACACAAAAACATAATTATGCTGGTGGGGGTGTCGGACGG
CGCAAAGGCTGCCTTCTCTCAATCCATCGCCCAGCCTAGGTTGCCGACAC
CACGGGCGTGGAAGCCTCGACGCCTGCAGACAACAACACAGTGGACACGC
ACCAATGTTACAGAGTACAGTATTCCGCACGAGACATCGTCGCTAAACAG
GGGGAATACGCTTGCTACAGAGCTCAGCCGTTCGCGTATCGTATAAAATC
TGATAAAAATCCGTGTCGACGATTAAGATTAAGACGAATATCTGACCATA
TTAGATACGGTACGTTCGTCAGGTTTATCACATACCGTATCCGATATAAG
ACACAAAAACATAATTATGCTGGTGGGGGTGTCGGACGGCGCAAAGGCTG
CCTTCTCTCAATCCATCGCCCAGCCTAG
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