mRNA_H-elongata_contig144367.3045.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig144367.3045.1
Unique NamemRNA_H-elongata_contig144367.3045.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A6H5K9S3_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9S3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.270e-48
Identity = 83/107 (77.57%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    7 VFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            V+AVEFTDMA HARRLV KNGME +VEVIQCSVE+L+LD KV            DIIISEWMGYFLLRESMLDSLVRARDRWL PGGLMFPSRCTMMWGL++DEQ R
Sbjct:  107 VYAVEFTDMANHARRLVAKNGMEGVVEVIQCSVEDLKLDAKV------------DIIISEWMGYFLLRESMLDSLVRARDRWLVPGGLMFPSRCTMMWGLVNDEQDR 201
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A835YPE5_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPE5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.900e-43
Identity = 77/108 (71.30%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    4 KVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KVFAVE+TDMAKHAR+L+  NG  DIVEVIQ SVE L+LDG V            DIIISEWMGYFLLRESMLDS+VRARDRWL PGGLMFPS  TM WGL+SDE+ R
Sbjct:   75 KVFAVEYTDMAKHARKLIEANGASDIVEVIQSSVEALQLDGPV------------DIIISEWMGYFLLRESMLDSVVRARDRWLAPGGLMFPSHATMYWGLVSDEEDR 170
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A812S7V0_SYMMI (PRMT10 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7V0_SYMMI)

HSP 1 Score: 132 bits (332), Expect = 2.120e-35
Identity = 69/108 (63.89%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    4 KVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KVFA+EFT+MA HAR LV  NGM DIVEVIQ SVE++ L          C+   VDIIISEWMGYFLLRESMLDS++RAR++W+ PGG MFPS  TM+ G IS+EQ R
Sbjct:   47 KVFAIEFTEMAMHARALVEANGMSDIVEVIQSSVEDINLP---------CQ---VDIIISEWMGYFLLRESMLDSVIRARNKWMKPGGSMFPSTATMLLGCISNEQDR 142
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A812WJC4_SYMMI (PRMT10 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJC4_SYMMI)

HSP 1 Score: 127 bits (319), Expect = 6.400e-35
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    4 KVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KV+A+E+T+MA HAR LV  NGM DIVEVIQ S E++ L          C+   VDIIISEWMGYFLLRESMLDS++RAR++W+ PGG MFPS  TM  G IS+EQ R
Sbjct:   46 KVYAIEYTEMAVHARALVEANGMSDIVEVIQSSAEDINLP---------CQ---VDIIISEWMGYFLLRESMLDSVIRARNKWMKPGGSMFPSTATMFLGCISNEQDR 141
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A7S3MEY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEY8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.140e-33
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    4 KVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KV+A EFTDMA HAR LV KNG+ D++EVIQ SVE+L+L  KV            DII+SEWMGY LLRESMLDS++RAR++W+ PGG MFPS  TM +  IS E  R
Sbjct:   96 KVYACEFTDMAIHARNLVEKNGLSDVIEVIQSSVEDLDLPCKV------------DIIVSEWMGYILLRESMLDSVIRARNKWMKPGGSMFPSHATMYFSAISFEDDR 191
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A7S2V4Q5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Q5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.970e-33
Identity = 69/109 (63.30%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 KKVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KKV+AVEFTDMA HARRLV  NG  D VEVI+ SVEEL+L  KV            DIIISEWMGYFLLRESM+DSL++ARDR+L P GL+FPS  TM W  I  E+ R
Sbjct:  111 KKVYAVEFTDMATHARRLVEANGQADKVEVIKGSVEELDLAEKV------------DIIISEWMGYFLLRESMVDSLIKARDRFLKPDGLLFPSHATMYWAPICFEEER 207
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A448ZRU7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRU7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.440e-32
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 KKVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELEL----DGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPG-GLMFPSRCTMMWGLISDEQVR 327
            +KV+A+E+TDMAKHAR+++  NG+EDIV VIQ +VEE++L    D     C    ER  VDI+ISEWMGYFLLRESMLDSL+RARD++L P  GLMFPS CTM    ++DE+ R
Sbjct:   98 RKVYAIEYTDMAKHARQVMKANGVEDIVTVIQGAVEEIKLPIEEDSLESDCPEHPERV-VDIVISEWMGYFLLRESMLDSLIRARDKYLKPATGLMFPSHCTMYVAPVNDEEER 210
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A482SBI8_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBI8_9ARCH)

HSP 1 Score: 123 bits (308), Expect = 1.620e-31
Identity = 65/108 (60.19%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    4 KVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR 327
            KV+A E+TDMA HAR+LV  NG+  IVEVIQ SVE+L+L G+V            DIIISEWMGY LLRESMLDS++RAR+RWL P G MFPS  TM    IS E  R
Sbjct:   89 KVYACEYTDMANHARKLVEANGLSHIVEVIQSSVEDLQLPGQV------------DIIISEWMGYILLRESMLDSVIRARNRWLKPDGAMFPSHATMYLSAISYEDDR 184
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: A0A6H5K1X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.560e-31
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 KKVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISD 315
            KKV+AVE+TDMAKHAR +V KNG  D+++VIQ S E ++L  KV            D+I+SEWMGYFLLRESMLDS+V ARD+WL   G+MFPS  TM+W  + D
Sbjct:  168 KKVYAVEYTDMAKHARTMVEKNGFGDVIQVIQGSAESIQLPEKV------------DVIVSEWMGYFLLRESMLDSVVVARDKWLKDTGVMFPSHATMVWAPVDD 260
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BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Match: D7FL25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL25_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 9.230e-31
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 KKVFAVEFTDMAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIIISEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISD 315
            KKV+AVE+TDMAKHAR +V KNG  D+++VIQ S E ++L  KV            D+I+SEWMGYFLLRESMLDS+V ARD+WL   G+MFPS  TM+W  + D
Sbjct:  222 KKVYAVEYTDMAKHARTMVEKNGFGDVIQVIQGSAESIQLPEKV------------DVIVSEWMGYFLLRESMLDSVVVARDKWLKDTGVMFPSHATMVWAPVDD 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig144367.3045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9S3_9PHAE1.270e-4877.57Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A835YPE5_9STRA5.900e-4371.30S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A812S7V0_SYMMI2.120e-3563.89PRMT10 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A812WJC4_SYMMI6.400e-3561.11PRMT10 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S3MEY8_9STRA1.140e-3359.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2V4Q5_9STRA4.970e-3363.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A448ZRU7_9STRA2.440e-3259.65Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A482SBI8_9ARCH1.620e-3160.19Class I SAM-dependent methyltransferase n=1 Tax=ar... [more]
A0A6H5K1X3_9PHAE6.560e-3157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL25_ECTSI9.230e-3157.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig144367contigH-elongata_contig144367:262..1307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue9.2e-36
Seed eggNOG ortholog2880.D8LB79
Preferred namePRMT10
KEGG rclassRC00003,RC02120,RC03388,RC03390
KEGG koko:K11434
KEGG ReactionR11216,R11217,R11219
KEGG Pathwayko04068,ko04922,map04068,map04922
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008469,GO:0008757,GO:0009791,GO:0009889,GO:0009987,GO:0010228,GO:0010468,GO:0010556,GO:0016043,GO:0016273,GO:0016274,GO:0016277,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019919,GO:0022414,GO:0031323,GO:0031326,GO:0032259,GO:0032501,GO:0032502,GO:0034969,GO:0035241,GO:0035242,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein-arginine omega-N asymmetric methyltransferase activity
EggNOG OGsCOG0500@1,KOG1499@2759
EC2.1.1.319
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig144367.3045.1prot_H-elongata_contig144367.3045.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig144367 292..1307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.1005535-UTR-H-elongata_contig144367:261..2911622929856.1005535-UTR-H-elongata_contig144367:261..291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144367 262..291 +
1691679184.9104705-UTR-H-elongata_contig144367:261..2911691679184.9104705-UTR-H-elongata_contig144367:261..291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig144367 262..291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.1185606-CDS-H-elongata_contig144367:291..4261622929856.1185606-CDS-H-elongata_contig144367:291..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144367 292..426 +
1691679184.924566-CDS-H-elongata_contig144367:291..4261691679184.924566-CDS-H-elongata_contig144367:291..426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144367 292..426 +
1622929856.1336625-CDS-H-elongata_contig144367:1145..13071622929856.1336625-CDS-H-elongata_contig144367:1145..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144367 1146..1307 +
1691679184.9372568-CDS-H-elongata_contig144367:1145..13071691679184.9372568-CDS-H-elongata_contig144367:1145..1307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig144367 1146..1307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig144367.3045.1

>prot_H-elongata_contig144367.3045.1 ID=prot_H-elongata_contig144367.3045.1|Name=mRNA_H-elongata_contig144367.3045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MAKHARRLVTKNGMEDIVEVIQCSVEELELDGKVCGCFFLCERNWVDIII
SEWMGYFLLRESMLDSLVRARDRWLTPGGLMFPSRCTMMWGLISDEQVR
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mRNA from alignment at H-elongata_contig144367:262..1307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig144367.3045.1 ID=mRNA_H-elongata_contig144367.3045.1|Name=mRNA_H-elongata_contig144367.3045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1046bp|location=Sequence derived from alignment at H-elongata_contig144367:262..1307+ (Himanthalia elongata Himel1 dioecious)
AAAAAGGTGTTTGCCGTAGAGTTCACGGACATGGCCAAGCACGCGAGACG
CCTCGTTACCAAGAACGGGATGGAGGACATTGTGGAAGTGATCCAGTGCA
GTGTCGAGGAGCTGGAGCTCGATGGAAAGGTGTGTGGATGTTTTTTTTTG
TGTGAGAGGAATTGGGTGACGGGACACGGGTGTCGAGCACCTATTTCGCT
CTTTCTCTCTTTAGATTCCGTTCGGCAACGTTCACTACTTCTAATACTGT
GGTATGGCACAGGAGCTCCCCCCTTGTGGGTGATGCGAAATTATACGATA
TGAACTCCTTTTAGAATAGAGAGGTGGTGGGGGAGGAAAGAGTCGTAGCA
GACGCCTCTCGCACCCGCGGACCACGCTCGCAATGAATGCCCAAGTCTTT
TACGTGTTTAGTGAGGATTGTAAGCGTTGACGCGACATACAAAGCCTTTC
TTTTGCGAGAAGCTCTCTCTAGAGCTTTAGCCGTCACTGAACACGGTCTG
AAGGAGGTGACATGGTGACATGGCAAGCAACCGAGGGGAGAGGAGGCGCG
GGAAAGGGCGATAATAATATCTCGCTGTTTGAGGCCGAAAAAGGAATCGG
TCAAGACTTTTTTTTTATGGAGATAAAGCTGCGCTAACAGCGTCACGCCA
TGCTTTGGCGGGCTTAATGTCAAGAAGAGAGAACAAGCCAGAGTGCATGT
GGTGGGTACGCGCGGTCGGGTTCGTTCCATGATTGATGCTCCGGTTCCTG
CCCTCCCCTAGGACTTCATACGCGATCCATATTTCAAGGCAGATACGAGA
GCCAAAACAAGTCGCGTTTTCACGTATGTCTAACGAACGCCTGACAACCC
TCCCCCCTCCCCTCCCCTCTCCCGCCTCGGCTAGGTTGACATTATTATCT
CGGAGTGGATGGGATACTTCTTGCTGAGGGAAAGCATGCTGGACTCGCTA
GTGCGTGCGAGAGATCGATGGTTGACTCCGGGGGGGCTCATGTTCCCTTC
GCGGTGTACCATGATGTGGGGTCTTATCAGCGACGAACAGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig144367:262..1307+

>mRNA_H-elongata_contig144367.3045.1 ID=mRNA_H-elongata_contig144367.3045.1|Name=mRNA_H-elongata_contig144367.3045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig144367:262..1307+ (Himanthalia elongata Himel1 dioecious)
ATGGCCAAGCACGCGAGACGCCTCGTTACCAAGAACGGGATGGAGGACAT
TGTGGAAGTGATCCAGTGCAGTGTCGAGGAGCTGGAGCTCGATGGAAAGG
TGTGTGGATGTTTTTTTTTGTGTGAGAGGAATTGGATGGCCAAGCACGCG
AGACGCCTCGTTACCAAGAACGGGATGGAGGACATTGTGGAAGTGATCCA
GTGCAGTGTCGAGGAGCTGGAGCTCGATGGAAAGGTGTGTGGATGTTTTT
TTTTGTGTGAGAGGAATTGGGTTGACATTATTATCTCGGAGTGGATGGGA
TACTTCTTGCTGAGGGAAAGCATGCTGGACTCGCTAGTGCGTGCGAGAGA
TCGATGGTTGACTCCGGGGGGGCTCATGTTCCCTTCGCGGTGTACCATGA
TGTGGGGTCTTATCAGCGACGAACAGGTGAGGGTTGACATTATTATCTCG
GAGTGGATGGGATACTTCTTGCTGAGGGAAAGCATGCTGGACTCGCTAGT
GCGTGCGAGAGATCGATGGTTGACTCCGGGGGGGCTCATGTTCCCTTCGC
GGTGTACCATGATGTGGGGTCTTATCAGCGACGAACAGGTGAGG
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