mRNA_H-elongata_contig143866.3015.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI) HSP 1 Score: 177 bits (450), Expect = 6.710e-51 Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
VTSLVLDEADRMLDLGFEQDVRDIIG CA KRQTAMFSATWPKSIRDLAAEFLA PVKVTVG D+LTANYRVEQHVEVVEERERDGKLLRLL CHKSR
Sbjct: 314 VTSLVLDEADRMLDLGFEQDVRDIIGYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERDGKLLRLLATCHKSR 414
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA) HSP 1 Score: 138 bits (348), Expect = 4.260e-36 Identity = 74/101 (73.27%), Postives = 82/101 (81.19%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
V +VLDEADRMLDLGFEQDVRDIIG A A RQTAMFSATWP+ IR LAAEFL PV+VTVGDD+LTAN RV QHVEV+ ERERD +LL LL + H +R
Sbjct: 351 VVYMVLDEADRMLDLGFEQDVRDIIGATARA--RQTAMFSATWPREIRALAAEFLREPVRVTVGDDDLTANARVAQHVEVIGERERDARLLELLEKVHGAR 449
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK) HSP 1 Score: 123 bits (309), Expect = 7.890e-31 Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCC----AEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
V LVLDEADRMLDLGFEQD+R IIG C A AG R+TAMFSATWP+ +R+LAAEFL RPV+VT+G +L AN RV Q VEV+ ERER +L +LL + H R
Sbjct: 300 VAHLVLDEADRMLDLGFEQDMRAIIGACPAPGAAAGGRRTAMFSATWPREVRELAAEFLDRPVRVTIGGSKLAANARVSQCVEVMGERERGARLQQLLERYHDGR 404
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7R9U8F6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8F6_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.360e-30 Identity = 63/101 (62.38%), Postives = 77/101 (76.24%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
V LVLDEADRMLDLGFE+DV+ II C +RQT MFSATWP+SIR LAA FL PVK+TVG DELT+N+RV+Q VEV+ ER+R +L LL + H+ +
Sbjct: 282 VEYLVLDEADRMLDLGFERDVKAIIANCMPPPERQTVMFSATWPESIRQLAATFLNNPVKITVGTDELTSNHRVQQTVEVIAERDRFQRLRELLNRYHRKK 382
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A7S1UCS2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCS2_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.270e-29 Identity = 59/101 (58.42%), Postives = 77/101 (76.24%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSR 304
V LVLDEADRMLD+GFE+DV+ II C RQT MFSATWP+SIR+LA+ FL P+K++VG D+LT+N+RV+Q VEV+ E +R+ +L LL + HK R
Sbjct: 25 VEYLVLDEADRMLDMGFERDVKAIIANCMPPPARQTVMFSATWPQSIRELASTFLNSPIKISVGSDDLTSNHRVKQTVEVIGEFDREQRLRELLKKYHKGR 125
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A1A0HKL3_9ASCO (DEAD-domain-containing protein n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A1A0HKL3_9ASCO) HSP 1 Score: 117 bits (293), Expect = 1.040e-28 Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGD-DELTANYRVEQHVEVVEERERDGKLLRLL 283
V LVLDEADRMLD GFE+ ++ IIGC + RQT MF+ATWPK +RDLA+EF+ PVKVTVGD DEL+AN R+ Q VEV++ RE++ KLL+LL
Sbjct: 259 VEYLVLDEADRMLDKGFEEHIKKIIGCTPKKTSRQTLMFTATWPKEVRDLASEFMVSPVKVTVGDRDELSANKRITQIVEVIDPREKERKLLQLL 353
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: W7TSQ0_9STRA (RNA helicase, DEAD-box type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ0_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.100e-28 Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDDELTANYRVEQHVEVVEERERDGKLLRLLGQCH 295
V+ LVLDEADRMLD GFEQ +R I+ C G+RQTA+FSATWP +I+ LA EFL PVKVT+G ++L++N RV+Q VEVV E ER+G+L LL Q H
Sbjct: 236 VSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYH 333
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: M3AU96_PSEFD (Uncharacterized protein n=1 Tax=Pseudocercospora fijiensis (strain CIRAD86) TaxID=383855 RepID=M3AU96_PSEFD) HSP 1 Score: 116 bits (290), Expect = 1.760e-28 Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 2
Query: 11 LVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVGDD---ELTANYRVEQHVEVVEERERDGKLLRLLGQ 289
LVLDEADRMLD GFEQD+R II CA + +RQT MF+ATWP S+RDLAAEFL PV++T+GD+ EL AN R+ Q VEVVEE + +LL LL Q
Sbjct: 202 LVLDEADRMLDKGFEQDIRKIITSCAPSAERQTVMFTATWPPSVRDLAAEFLRDPVRITIGDNASGELRANQRIVQEVEVVEEMAKQRRLLDLLNQ 297
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: U1HQR2_ENDPU (RNA helicase n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1HQR2_ENDPU) HSP 1 Score: 116 bits (291), Expect = 1.780e-28 Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVG------DDELTANYRVEQHVEVVEERERDGKLLRLLGQCHK 298
V LVLDEADRMLD GFE D+++I+G + KRQTAMF+ATWPKSIR+LAA F+ PV++T+G EL AN R++Q VEVVE+ E++G+LL+LL Q K
Sbjct: 237 VKYLVLDEADRMLDKGFEDDIKEIVGKMPSSKKRQTAMFTATWPKSIRELAATFMTEPVRITIGRTDTEDSGELRANTRIKQSVEVVEQHEKEGRLLQLLNQFQK 341
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Match: A0A6B2L5F5_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5F5_9EUKA) HSP 1 Score: 115 bits (287), Expect = 2.270e-28 Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 2
Query: 2 VTSLVLDEADRMLDLGFEQDVRDIIGCCAEAGKRQTAMFSATWPKSIRDLAAEFLARPVKVTVG--DDELTANYRVEQHVEVVEERERDGKLLRLLGQCHKSRQ 307
V LVLDEADRMLD+GFE+D+R IIGC + KRQTAMFSATWP SI+ LA+EFLA P+KVTVG + +++N V+Q VEV+E +R+ +L LL + HKS Q
Sbjct: 135 VEYLVLDEADRMLDMGFEKDIRTIIGCTPDKSKRQTAMFSATWPLSIQKLASEFLADPIKVTVGTLSEGMSSNANVKQIVEVLESDQRNDRLKALLKEYHKSGQ 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig143866.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig143866.3015.1 >prot_H-elongata_contig143866.3015.1 ID=prot_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp GDFAGPGRGGPNVGPGLRAGRARHHRMLRRGGETADGNVLGHVAQVHPRSback to top mRNA from alignment at H-elongata_contig143866:235..993+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig143866.3015.1 ID=mRNA_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig143866:235..993+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig143866:235..993+ >mRNA_H-elongata_contig143866.3015.1 ID=mRNA_H-elongata_contig143866.3015.1|Name=mRNA_H-elongata_contig143866.3015.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig143866:235..993+ (Himanthalia elongata Himel1 dioecious)back to top |