mRNA_H-elongata_contig142524.2943.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142524.2943.1
Unique NamemRNA_H-elongata_contig142524.2943.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A6H5L889_9PHAE (HOOK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L889_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.240e-36
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLKSSVREE 267
            QVN LQTDKEKLESYTK+TLH FQDKYMVAISHCK Q+ +KNEKIDYLESKI++DK  SKREERLLMS+VYELGMD+IERQLKSSV ++
Sbjct:  405 QVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAQKNEKIDYLESKISQDKAASKREERLLMSSVYELGMDIIERQLKSSVSDQ 493
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: D7G7L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.330e-36
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLKSSVREE 267
            QVN LQTDKEKLESYTK+TLH FQDKYMVAISHCK Q+ EKNEKIDYLESKI++DK  SKREERLLMS+VYELGMD+IERQLKSSV ++
Sbjct:  537 QVNNLQTDKEKLESYTKKTLHKFQDKYMVAISHCKAQIAEKNEKIDYLESKISQDKAASKREERLLMSSVYELGMDIIERQLKSSVSDQ 625
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A7S4D7M7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7M7_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 4.700e-22
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLKSSVRE 264
            + N L  DK KLE+YTK+TLH  Q+KY+VA+  CK QL E+ ++I+ LE++ A+DK   KREERLLMS VYELGMD+I  +L SSV E
Sbjct:   24 EANRLAGDKAKLEAYTKKTLHKVQEKYLVALQTCKNQLRERQDRIEALEARQAKDKAAQKREERLLMSAVYELGMDIINTRLVSSVGE 111
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A7S2UWL2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWL2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 5.030e-20
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 VNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLKSSV 258
            +N L +DKEKLE+YTK+TLH  Q+KY+ A+  CK QL+E  EKI +LE+  A+DK T K EERLLMS +Y +GMD++E +L  +V
Sbjct:  148 INRLTSDKEKLEAYTKKTLHKVQEKYLTALQTCKNQLSENQEKIKHLENSRAKDKQTQKLEERLLMSAMYNMGMDMVEHKLVHTV 232
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A7R9VIL8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VIL8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.770e-19
Identity = 44/79 (55.70%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   13 LQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLK 249
            L +DKEKLE+YTK+TL  FQ+KY+VA+  CK +L EK++KI+ LE + A +K   KREERLL ST+YELG+ +++++LK
Sbjct:   82 LASDKEKLEAYTKKTLSKFQEKYLVALQECKAKLKEKHDKIEALEQRSASEKTAQKREERLLSSTIYELGLAIMQQKLK 160
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A1E7FVU8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVU8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.160e-17
Identity = 43/76 (56.58%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   22 DKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLK 249
            DK+KLE+YTK TL  FQDKY+VA+  CK +L EK +KI+ LES+ A +K + KREERLL ST++ELG+ +++ +LK
Sbjct:  516 DKDKLEAYTKRTLAKFQDKYLVALQECKAKLKEKQDKIEVLESRSATEKTSQKREERLLSSTIFELGLSIMQNRLK 591
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A448ZJZ8_9STRA (HOOK domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJZ8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.900e-17
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:   22 DKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLK 249
            DK+KLE+YTK TL  FQDKY+VA+  CK +L EK +KI+ LES+ A +K   KREERLL ST++ELG+ +++ +LK
Sbjct:  366 DKDKLEAYTKRTLAKFQDKYLVALQECKAKLKEKQDKIEVLESRSATEKSAQKREERLLSSTIFELGLSIMQNRLK 441
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: B8BRZ1_THAPS (Microtubule-associated protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRZ1_THAPS)

HSP 1 Score: 83.6 bits (205), Expect = 8.020e-17
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQL 246
            +V  L  DKEKLE+YTK+TL  FQ+KY+VA+  CK +L EK++KI+ LE + A +KV  KREERLL S +YELG+ +++ +L
Sbjct:  493 EVTKLMNDKEKLEAYTKKTLQKFQEKYLVALQDCKAKLKEKHDKIEALEMRSANEKVAQKREERLLSSAIYELGLGMMQTRL 574
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A7S0C7J1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7J1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.010e-16
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQL 246
            Q+  + +DKEKLE+YTK+TL  FQ+KY+VA+  CK +L EK++KI+ LE + A +K   KREERLL ST+YELG+ +++ +L
Sbjct:  387 QIAKVSSDKEKLEAYTKKTLSKFQEKYLVALQECKAKLKEKHDKIEQLEMRSASEKTAQKREERLLSSTIYELGLAIMQNRL 468
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BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Match: A0A1Z5KLR0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLR0_FISSO)

HSP 1 Score: 80.9 bits (198), Expect = 7.110e-16
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   22 DKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLESKIARDKVTSKREERLLMSTVYELGMDLIERQLK 249
            DKE+LE+YTK+TL  FQDKY+VA+  CK +L EK +KI+ LE +   ++   KREERLL ST+YELG+ +++ +LK
Sbjct:  501 DKERLEAYTKKTLSKFQDKYLVALQDCKTKLKEKQDKIESLEQRSVSERAAQKREERLLSSTIYELGLAIMQNKLK 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142524.2943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L889_9PHAE1.240e-3682.02HOOK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G7L9_ECTSI1.330e-3683.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D7M7_HETAK4.700e-2257.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWL2_9STRA5.030e-2055.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9VIL8_9STRA5.770e-1955.70Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FVU8_9STRA3.160e-1756.58Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZJZ8_9STRA6.900e-1756.58HOOK domain-containing protein n=1 Tax=Pseudo-nitz... [more]
B8BRZ1_THAPS8.020e-1753.66Microtubule-associated protein n=1 Tax=Thalassiosi... [more]
A0A7S0C7J1_9STRA1.010e-1652.44Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1Z5KLR0_FISSO7.110e-1653.95Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142524contigH-elongata_contig142524:34..1544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue7.2e-32
Seed eggNOG ortholog2880.D7G7L9
Preferred nameHOOK3
KEGG koko:K16536,ko:K16611,ko:K16612
GOsGO:0000226,GO:0000242,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005801,GO:0005813,GO:0005815,GO:0005856,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007017,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007097,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007568,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008333,GO:0008340,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0010259,GO:0010721,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0017016,GO:0017137,GO:0019827,GO:0019899,GO:0021846,GO:0022008,GO:0022027,GO:0030154,GO:0030182,GO:0030705,GO:0030900,GO:0031122,GO:0031267,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034452,GO:0034453,GO:0034454,GO:0034613,GO:0042051,GO:0042461,GO:0042462,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045022,GO:0045202,GO:0045466,GO:0045467,GO:0045503,GO:0045505,GO:0045595,GO:0045596,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051020,GO:0051093,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051640,GO:0051641,GO:0051645,GO:0051647,GO:0051649,GO:0051656,GO:0051959,GO:0051960,GO:0051961,GO:0060284,GO:0060322,GO:0061351,GO:0065007,GO:0070695,GO:0070727,GO:0071539,GO:0071840,GO:0072393,GO:0072698,GO:0080171,GO:0090596,GO:0097150,GO:0097435,GO:0097708,GO:0098657,GO:0098727,GO:0098927,GO:1905508,GO:2000026
EggNOG free text desc.cytoskeleton-dependent intracellular transport
EggNOG OGs2CMK1@1,2QQM8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHook-related protein family
Ec32 orthologEc-22_001880.1
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.2027767-CDS-H-elongata_contig142524:33..1801622929846.2027767-CDS-H-elongata_contig142524:33..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142524 34..180 +
1691679181.194597-CDS-H-elongata_contig142524:33..1801691679181.194597-CDS-H-elongata_contig142524:33..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142524 34..180 +
1622929846.218037-CDS-H-elongata_contig142524:1424..15441622929846.218037-CDS-H-elongata_contig142524:1424..1544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142524 1425..1544 +
1691679181.206878-CDS-H-elongata_contig142524:1424..15441691679181.206878-CDS-H-elongata_contig142524:1424..1544Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142524 1425..1544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142524.2943.1prot_H-elongata_contig142524.2943.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142524 34..1544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142524.2943.1

>prot_H-elongata_contig142524.2943.1 ID=prot_H-elongata_contig142524.2943.1|Name=mRNA_H-elongata_contig142524.2943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
QVNTLQTDKEKLESYTKETLHTFQDKYMVAISHCKEQLTEKNEKIDYLES
KIARDKVTSKREERLLMSTVYELGMDLIERQLKSSVREE
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mRNA from alignment at H-elongata_contig142524:34..1544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142524.2943.1 ID=mRNA_H-elongata_contig142524.2943.1|Name=mRNA_H-elongata_contig142524.2943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1511bp|location=Sequence derived from alignment at H-elongata_contig142524:34..1544+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAACACCTTGCAGACAGACAAGGAAAAGCTGGAGTCGTATACGAA
GGAGACCCTGCACACCTTCCAGGACAAGTACATGGTGGCCATTTCGCACT
GCAAGGAGCAGCTGACTGAAAAAAACGAAAAGATCGACTACCTCGAGGTA
ACATCAGATAATACCCTGCCAGAGTTGTATAGAACTCCCGCTGTTATATA
CTTATTTTAAATAAAAACTTGAACTCATTAAGACCCTTCGAACATCCACC
ACGCCTTCTTAGCACCGTGAGAGGTGCAGTCCAGGGGACCAACTATCGTC
AGGTTAGAATGTGTACAATGCTAACCTTGAGTACGTGAGCTATGGAATTA
TTAGAGGGAGGGGGATAGAGGCAGGAAGTAAGAACAAGCAATAAAGTTGG
TAATACTTATTATGTTAATGTTGATGTTACTACTATAACTGTATTAGGGA
CTAAAATGTGATTAGGGCTCTATTCTATAGATCAATTGATTATATTTATT
AGTAACTAACTTATGAACTCATTTTAACCCTGAACTCATCGCAACGACTA
GGAAAACAACTAAGACTAGCGTTGTTTATTGGAAAAACCGATATACGGTG
ACAAGAAGGTGCGGATGTTCGGAGAGTTAGAATGAGCTTAAAGTGTTTTA
AATAAAAATAAAATTGTAAAAAAAACTACCATAGCAACACGACTACAGTA
GAAATCGCAAGAAAAAGCTCGGGCAAAAAAAACAAATTTCATCCCTTACG
TGTTGTGAAAAGGAATATAGTATAGTATATAGTATAGTATATAGTATAGT
ATATAGTATAGTATATAGTATAGACCGTTAGTGCCTAGAACAAGCAATGA
AGATGATATTAATAATAATGCTAGTAACATATGTAATTAGAATGAATGAA
GAGGGTGAATTAGATGGTAATGATTATTATTATTATTATTATTATTATTA
TTATTATTATTTTAAAAAATATATATGAAATCATTCCAACCCTCCAAACA
TCCAGGGTTATAACTATCGTCAGGTTCGAATGTCGACATGGTACATGGTT
GTATAATTATATAGATGCTAGTATATAACTATTGATGACAGACCTAACTA
TCTAAGGCAGTATTGGCAACCATATCCTGTTCGTTCGTAATATGCAATAT
GCAATGACTCCCCCCTACCCCCCCACATAAAACACCCCACAACCCACACA
CATAAACAAACTGTATTTAGNNNNNNNNNNAATCCCCCCCCCCCCCCCCA
CCTCACACACACACACACACACACATGAACCACCTGTATTTAGCCGGACG
GTAAGTTGTATTAAAATAGTGCGCATGCCTGTGTAACCTGTCACGTGTCC
CTCGGCTGTCGGCGGGAATGTTCCCCGGAATGTTCCACCAGAGTAAGATC
GCTCGAGATAAGGTTACTTCCAAGCGGGAGGAGCGGTTGCTGATGTCTAC
CGTGTACGAGCTGGGCATGGACCTCATCGAGCGACAGCTCAAGTCCTCGG
TGAGAGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig142524:34..1544+

>mRNA_H-elongata_contig142524.2943.1 ID=mRNA_H-elongata_contig142524.2943.1|Name=mRNA_H-elongata_contig142524.2943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig142524:34..1544+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAACACCTTGCAGACAGACAAGGAAAAGCTGGAGTCGTATACGAA
GGAGACCCTGCACACCTTCCAGGACAAGTACATGGTGGCCATTTCGCACT
GCAAGGAGCAGCTGACTGAAAAAAACGAAAAGATCGACTACCTCGAGCAG
GTAAACACCTTGCAGACAGACAAGGAAAAGCTGGAGTCGTATACGAAGGA
GACCCTGCACACCTTCCAGGACAAGTACATGGTGGCCATTTCGCACTGCA
AGGAGCAGCTGACTGAAAAAAACGAAAAGATCGACTACCTCGAGAGTAAG
ATCGCTCGAGATAAGGTTACTTCCAAGCGGGAGGAGCGGTTGCTGATGTC
TACCGTGTACGAGCTGGGCATGGACCTCATCGAGCGACAGCTCAAGTCCT
CGGTGAGAGAAGAGAGTAAGATCGCTCGAGATAAGGTTACTTCCAAGCGG
GAGGAGCGGTTGCTGATGTCTACCGTGTACGAGCTGGGCATGGACCTCAT
CGAGCGACAGCTCAAGTCCTCGGTGAGAGAAGAG
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