mRNA_H-elongata_contig142510.2942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142510.2942.1
Unique NamemRNA_H-elongata_contig142510.2942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142510.2942.1 vs. uniprot
Match: D8LNJ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.840e-32
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:  406 AHALVFAEQAILERVASYQDGLKGKDVWNGDVAASVGHLNLMEATHLRGEPLSYTHLSMSRAAKDGRMDIVIWLHNYTDVEQAATAMDSAAAGGHLE-VKLLQRRK 720
            AHAL FA+  + ER+   QDG  G D WNGDVAA+ GHL+LM + H   +PLSYTHL +SRAAK+GRMD+V WLH+YTDV Q  +AMDSAAAGGHLE VK L+  +
Sbjct:  110 AHAL-FADLGLWERIGQCQDGESGSDFWNGDVAAAEGHLSLMISKHAERDPLSYTHLGLSRAAKNGRMDVVRWLHDYTDVPQIPSAMDSAAAGGHLEIVKFLEEHR 214
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BLAST of mRNA_H-elongata_contig142510.2942.1 vs. uniprot
Match: A0A835ZD33_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD33_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.150e-11
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  403 AAHALVFAEQAILERVASYQDGLKGKDVWNGDVAASVGHLNLMEATHLRGEPLSYTHLSMSRAAKDGRMDIVIWLHNYT-----DVEQAATAMD 669
            +A+ LVF + A+  R+ ++QDG++  D WNGD A+  GHL+ ++       PLS+THLS++ AA++G M +V+ LH  +     D      AMD
Sbjct:    9 SAYELVFRDAALWSRLTAFQDGVRFTDYWNGDHASVCGHLSFIKLKESIASPLSFTHLSINGAAREGHMAVVVHLHERSKGRPGDPSATVAAMD 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142510.2942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNJ7_ECTSI3.840e-3262.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZD33_9STRA1.150e-1138.30Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142510contigH-elongata_contig142510:168..1260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D8LNJ7
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size732
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142510.2942.1prot_H-elongata_contig142510.2942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142510 168..371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.097569-CDS-H-elongata_contig142510:167..3711622929846.097569-CDS-H-elongata_contig142510:167..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142510 168..371 -
1691679181.144615-CDS-H-elongata_contig142510:167..3711691679181.144615-CDS-H-elongata_contig142510:167..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142510 168..371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.1221724-UTR-H-elongata_contig142510:371..6851622929846.1221724-UTR-H-elongata_contig142510:371..685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 372..685 -
1691679181.1558263-UTR-H-elongata_contig142510:371..6851691679181.1558263-UTR-H-elongata_contig142510:371..685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 372..685 -
1622929846.1365426-UTR-H-elongata_contig142510:713..7941622929846.1365426-UTR-H-elongata_contig142510:713..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 714..794 -
1691679181.1643121-UTR-H-elongata_contig142510:713..7941691679181.1643121-UTR-H-elongata_contig142510:713..794Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 714..794 -
1622929846.1486146-UTR-H-elongata_contig142510:1127..12601622929846.1486146-UTR-H-elongata_contig142510:1127..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 1128..1260 -
1691679181.1799073-UTR-H-elongata_contig142510:1127..12601691679181.1799073-UTR-H-elongata_contig142510:1127..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142510 1128..1260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142510.2942.1

>prot_H-elongata_contig142510.2942.1 ID=prot_H-elongata_contig142510.2942.1|Name=mRNA_H-elongata_contig142510.2942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MEATHLRGEPLSYTHLSMSRAAKDGRMDIVIWLHNYTDVEQAATAMDSAA
AGGHLEVKLLQRRKLDL*
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mRNA from alignment at H-elongata_contig142510:168..1260-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142510.2942.1 ID=mRNA_H-elongata_contig142510.2942.1|Name=mRNA_H-elongata_contig142510.2942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-elongata_contig142510:168..1260- (Himanthalia elongata Himel1 dioecious)
TTTGTTTTTACCCTTTTATATTTCCCAGCTAGAACCTTGGCTGCCAAGCT
TTATCATCAGCGAAGTCTCCGACGGGGATAACTGAGACACTTGAACGATG
GATGCAATATATTTATCCTCTCTTCGTGAAGTGGTGAGAATGGAAGTGCC
TTGTTGTCTTATTTGTTCCCAATGATCTCCGAAATTTTGAACCTACTTTG
TCAAATTGTCGTCTCTCACAATTCTCCAGATGCGACGGAGCACTGTTCTA
GTACGGTGGCAACACGGTAACACGACTTTGAGCTTACATGTTTGTTTTGG
TGTCCACACGGTCGGTCGATCTCAGTCGCTCATTAAATTATTCTTGCTAG
ACAAGGCTTTCATCTGTTTCTCCTCGTTGAGCTTTCTTGTAGGGAACATC
CCACTCTCCTCTAACGGCACCACTTGCTTGTCGGCGATCGGCGACAAACC
CGCGGTGGAATCGAAGGAGAACTCGGGAGGCAAGATTGGTGTTGACAAGA
GTAACACTGTTACCATCTCATCGACTTCTCGCAAAGGTGAAGCTGAAGCC
CACGTTGCAGTTGCGCATGGAAAAGACGTGGCAAATGGTAGCAGAGCCAA
GGACGACAAGCTAAAGAACGGCACGCGCGGTCACGTCCCAGAGGATCTAT
CATCGGACAGACGATCTCGTGATGGTCGATGGGATACCGTGGCGACAGCC
GAAACATGGTCAACGCTGAGCGAAAGTTTGGAAAACAGCAGGAGTACCAG
CGATAGTGGCAAGGCGGCACATGCCCTGGTGTTCGCGGAGCAGGCCATCT
TGGAGCGCGTTGCCTCGTACCAAGATGGACTGAAGGGAAAAGACGTTTGG
AACGGAGATGTCGCGGCCTCGGTCGGACACTTGAATCTCATGGAAGCGAC
GCACTTGAGAGGGGAACCGCTAAGTTACACACACCTGTCCATGAGTCGTG
CAGCCAAGGATGGCAGGATGGACATAGTTATTTGGCTCCACAACTACACC
GACGTGGAACAAGCTGCGACCGCCATGGACTCGGCAGCAGCGGGTGGACA
TCTCGAGGTGAAGTTATTGCAAAGACGGAAACTCGATCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig142510:168..1260-

>mRNA_H-elongata_contig142510.2942.1 ID=mRNA_H-elongata_contig142510.2942.1|Name=mRNA_H-elongata_contig142510.2942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig142510:168..1260- (Himanthalia elongata Himel1 dioecious)
ATGGAAGCGACGCACTTGAGAGGGGAACCGCTAAGTTACACACACCTGTC
CATGAGTCGTGCAGCCAAGGATGGCAGGATGGACATAGTTATTTGGCTCC
ACAACTACACCGACGTGGAACAAGCTGCGACCGCCATGGACTCGGCAGCA
GCGGGTGGACATCTCGAGGTGAAGTTATTGCAAAGACGGAAACTCGATCT
GTAAATGGAAGCGACGCACTTGAGAGGGGAACCGCTAAGTTACACACACC
TGTCCATGAGTCGTGCAGCCAAGGATGGCAGGATGGACATAGTTATTTGG
CTCCACAACTACACCGACGTGGAACAAGCTGCGACCGCCATGGACTCGGC
AGCAGCGGGTGGACATCTCGAGGTGAAGTTATTGCAAAGACGGAAACTCG
ATCTGTAA
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