mRNA_H-elongata_contig142484.2939.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142484.2939.1
Unique NamemRNA_H-elongata_contig142484.2939.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142484.2939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142484contigH-elongata_contig142484:121..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.824181-UTR-H-elongata_contig142484:120..1321622929845.824181-UTR-H-elongata_contig142484:120..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142484 121..132 +
1691679181.0327036-UTR-H-elongata_contig142484:120..1321691679181.0327036-UTR-H-elongata_contig142484:120..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142484 121..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.8408885-CDS-H-elongata_contig142484:132..4861622929845.8408885-CDS-H-elongata_contig142484:132..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142484 133..486 +
1691679181.041806-CDS-H-elongata_contig142484:132..4861691679181.041806-CDS-H-elongata_contig142484:132..486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142484 133..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142484.2939.1prot_H-elongata_contig142484.2939.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142484 133..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142484.2939.1

>prot_H-elongata_contig142484.2939.1 ID=prot_H-elongata_contig142484.2939.1|Name=mRNA_H-elongata_contig142484.2939.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MKMELGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDVE
VRMLECSSDWPTRDWIERTVINQFERLESEKSAAGSKAMFAGRGNGHGSK
PPIRCQICSRTGPTAQGC
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mRNA from alignment at H-elongata_contig142484:121..486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142484.2939.1 ID=mRNA_H-elongata_contig142484.2939.1|Name=mRNA_H-elongata_contig142484.2939.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig142484:121..486+ (Himanthalia elongata Himel1 dioecious)
GACTTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTT
GCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGG
TGGACCCAAAGGACGTGGATATCGTAATTCTGAACGGCCTCACCCCCCAG
TACGACGTCGAGGTTCGAATGCTGGAGTGCTCATCGGACTGGCCCACTCG
AGATTGGATAGAACGTACCGTCATCAACCAGTTCGAACGCCTGGAGTCTG
AAAAATCTGCAGCAGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGC
CATGGATCGAAACCCCCCATTCGCTGCCAAATTTGCTCGCGTACAGGTCC
TACTGCTCAGGGGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig142484:121..486+

>mRNA_H-elongata_contig142484.2939.1 ID=mRNA_H-elongata_contig142484.2939.1|Name=mRNA_H-elongata_contig142484.2939.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig142484:121..486+ (Himanthalia elongata Himel1 dioecious)
ATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCTGCGGGTGGA
CCAGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGACCCAAAGG
ACGTGGATATCGTAATTCTGAACGGCCTCACCCCCCAGTACGACGTCGAG
GTTCGAATGCTGGAGTGCTCATCGGACTGGCCCACTCGAGATTGGATAGA
ACGTACCGTCATCAACCAGTTCGAACGCCTGGAGTCTGAAAAATCTGCAG
CAGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGCCATGGATCGAAA
CCCCCCATTCGCTGCCAAATTTGCTCGCGTACAGGTCCTACTGCTCAGGG
GTGCATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTTGCTGCGGG
TGGACCAGATGGTCAAGGAACTGGAAAGGGTGGAGCGACCGGTGGACCCA
AAGGACGTGGATATCGTAATTCTGAACGGCCTCACCCCCCAGTACGACGT
CGAGGTTCGAATGCTGGAGTGCTCATCGGACTGGCCCACTCGAGATTGGA
TAGAACGTACCGTCATCAACCAGTTCGAACGCCTGGAGTCTGAAAAATCT
GCAGCAGGGAGTAAGGCTATGTTCGCGGGACGCGGCAATGGCCATGGATC
GAAACCCCCCATTCGCTGCCAAATTTGCTCGCGTACAGGTCCTACTGCTC
AGGGGTGC
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