mRNA_H-elongata_contig142185.2918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142185.2918.1
Unique NamemRNA_H-elongata_contig142185.2918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: D8LG86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG86_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-14
Identity = 39/41 (95.12%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEETRQ 123
            MLEAKNTRKRAEADVHLLANRLAHLQAEEEKA+RKTEET+Q
Sbjct:   48 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKARRKTEETKQ 88
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A812UQ84_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UQ84_SYMMI)

HSP 1 Score: 51.2 bits (121), Expect = 1.880e-6
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEETRQ 123
            MLE KN+RKRAE D+ LLANR+A L+AEEE+AK K  ET+Q
Sbjct:   15 MLELKNSRKRAEGDMQLLANRVALLKAEEERAKSKVRETKQ 55
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A6V1KT72_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KT72_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 2.430e-6
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEET 117
            ML+AKN+RKRAEADV LL NRL HLQ EEE+A +K  ET
Sbjct:   59 MLDAKNSRKRAEADVKLLQNRLKHLQMEEERAFKKVYET 97
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A024TRB7_9STRA (EF-hand domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRB7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.830e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEE 114
            MLEAK  RKRAE DV LLANRLAHL+ EE+KA++K +E
Sbjct:  160 MLEAKMQRKRAEEDVQLLANRLAHLRTEEKKAQKKIDE 197
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A662WV05_9STRA (Pterin-binding domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV05_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEE 114
            ML+AKN RK+AEAD  LLANRLAHL+AE+ +A+++ EE
Sbjct:  522 MLDAKNQRKQAEADAQLLANRLAHLRAEDARAQKRIEE 559
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A421GE68_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GE68_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.260e-5
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEE 114
            ML+AKN  K+AEAD  LLANRLAHL+AE+ +A+R+ EE
Sbjct:  121 MLDAKNQSKQAEADAQLLANRLAHLRAEDARAQRRIEE 158
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A5D6YFB7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB7_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.260e-5
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 LEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEE 114
            L+AKN RK AEADV LLANRLAHL+ EE +A+R+ EE
Sbjct:  125 LDAKNARKCAEADVQLLANRLAHLRQEEARAQRRIEE 161
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A6G0WSI3_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSI3_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.470e-5
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEE 114
            +L+AK  RKRAE DV LLANRLAHL+ EE+KA+RK +E
Sbjct:  126 VLDAKLQRKRAEEDVQLLANRLAHLRMEEKKAQRKIDE 163
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BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Match: A0A7S2C7F4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7F4_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.850e-5
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEET 117
            ML+ +  RKRAEADV LLANRL HL+ EEE+A +K  ET
Sbjct:   57 MLDVRKARKRAEADVQLLANRLQHLRFEEERAHKKIHET 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142185.2918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LG86_ECTSI1.300e-1495.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812UQ84_SYMMI1.880e-668.29Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A6V1KT72_HETAK2.430e-671.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024TRB7_9STRA6.830e-671.05EF-hand domain-containing protein n=2 Tax=Aphanomy... [more]
A0A662WV05_9STRA1.280e-565.79Pterin-binding domain-containing protein (Fragment... [more]
A0A421GE68_9STRA3.260e-565.79Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A5D6YFB7_9STRA3.260e-570.27Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0WSI3_9STRA4.470e-568.42EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S2C7F4_9STRA5.850e-564.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142185contigH-elongata_contig142185:417..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog2880.D8LG86
EggNOG OGs2AE5J@1,2RYV4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.401789-CDS-H-elongata_contig142185:416..5391622929844.401789-CDS-H-elongata_contig142185:416..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142185 417..539 -
1691679180.5166519-CDS-H-elongata_contig142185:416..5391691679180.5166519-CDS-H-elongata_contig142185:416..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142185 417..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142185.2918.1prot_H-elongata_contig142185.2918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142185 417..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142185.2918.1

>prot_H-elongata_contig142185.2918.1 ID=prot_H-elongata_contig142185.2918.1|Name=mRNA_H-elongata_contig142185.2918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
MLEAKNTRKRAEADVHLLANRLAHLQAEEEKAKRKTEETRQ
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mRNA from alignment at H-elongata_contig142185:417..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142185.2918.1 ID=mRNA_H-elongata_contig142185.2918.1|Name=mRNA_H-elongata_contig142185.2918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig142185:417..539- (Himanthalia elongata Himel1 dioecious)
ATGCTTGAGGCCAAAAACACACGAAAAAGGGCAGAGGCGGATGTACACCT
CTTGGCAAATCGCCTCGCGCATCTTCAAGCGGAAGAGGAAAAGGCGAAGA
GAAAAACGGAGGAAACGAGACAG
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Coding sequence (CDS) from alignment at H-elongata_contig142185:417..539-

>mRNA_H-elongata_contig142185.2918.1 ID=mRNA_H-elongata_contig142185.2918.1|Name=mRNA_H-elongata_contig142185.2918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig142185:417..539- (Himanthalia elongata Himel1 dioecious)
ATGCTTGAGGCCAAAAACACACGAAAAAGGGCAGAGGCGGATGTACACCT
CTTGGCAAATCGCCTCGCGCATCTTCAAGCGGAAGAGGAAAAGGCGAAGA
GAAAAACGGAGGAAACGAGACAGATGCTTGAGGCCAAAAACACACGAAAA
AGGGCAGAGGCGGATGTACACCTCTTGGCAAATCGCCTCGCGCATCTTCA
AGCGGAAGAGGAAAAGGCGAAGAGAAAAACGGAGGAAACGAGACAG
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