mRNA_H-elongata_contig14183.2894.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A6H5L6F8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F8_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.230e-38 Identity = 129/326 (39.57%), Postives = 155/326 (47.55%), Query Frame = 1
Query: 4 PYYYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAFTATTIKANMPAVRGAGAHS-RSMTSDVARTALGAGASLSLRPSMGLYLSSVSEHGGSGDFSPAGTEK--RRSTVNLPTNGEHDDYHLGDTGSMAPHAGDNESARRRGGEIEAKSAAGNQSSPSIPLPKLPSLFQP--QPFPGGDAATVIPARRRAPPS--FPSSLRYADLLRSSRLSATACLPEHEAVEKVGDGSDAHVDARAENQEVMQDSYLGWGSSGLGETGMAPPXXXXXLPGSGANTTGRARWGSGHYYK 960
PYYYENNFNSYP GLVTLFELLV+NNWNMIITGY+ ASPLG W YLYFLSFITL+V LALNVLTAIFMTAFT T KAN P+VRG GA S RS + ++ + +G L++ GG + G+ G Y L + G + + S P P P Q PG +A+ P+ FP + +S RLS LPE+E V G+ + E +D LGWG G PP + G G GR RWGSGHYYK
Sbjct: 124 PYYYENNFNSYPEGLVTLFELLVVNNWNMIITGYVHASPLGSWTYLYFLSFITLAVTLALNVLTAIFMTAFT-TAAKANTPSVRGGGALSQRSRSENIDE----------MDDDLGAILAAYDVGGGPAATAGVGSSSGXXXXXXXXXXGGRDGSYGLFSLRFRSGLLGRSNKGSXXXXXXXXXXXXLSASGEMPPPPTRPPSAQAAKDAAPGSEASNTADMAAATSPAVRFPDPFQQPQQ-QSGRLSG---LPENEEVVPESPGA---------SLEGARDLDLGWGKGGA-----EPPEPPQGVAGHG----GRTRWGSGHYYK 416
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A7S2V1H1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H1_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 4.540e-11 Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 4 PYYYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSF 156
PYYY NNFN+Y +GLV LFELLV+NNWN+I +GY + +W YL+F+ F
Sbjct: 67 PYYYLNNFNNYMSGLVVLFELLVVNNWNIIASGYWAVTNHSVWVYLFFIGF 117
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A7S4D9C3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9C3_HETAK) HSP 1 Score: 68.6 bits (166), Expect = 2.440e-9 Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 7 YYYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
+Y+ NNFNSY GLVT FELLV+NNWN++ +GY S + Y +F+SF V + +N+ T+ F++AF
Sbjct: 40 FYFLNNFNSYREGLVTAFELLVVNNWNVVSSGYFNESKGNYFIYFFFISFNIFVVTVLMNLFTSFFISAF 109
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A7R9U3R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3R5_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 4.320e-9 Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 7 YYYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFM 207
+YY NFNSY LVTLF+LLV+NNW++I TG++ S G AYLYF++F ++V++ LN++TA F+
Sbjct: 526 FYYMCNFNSYANSLVTLFDLLVVNNWHIIATGFVGIS--GKVAYLYFVAFNVVAVSVGLNIMTAFFI 590
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A6U4FCQ8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FCQ8_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.520e-8 Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 10 YYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFM 207
YY NFNSY LV LFELLV+NNW++I TG++ S G AY+YF+ F ++V + LN++TA+F+
Sbjct: 587 YYMCNFNSYADALVVLFELLVVNNWHIIATGFVSVS--GHVAYIYFVVFNVVAVTVGLNIMTALFI 650
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A2P2LHX7_RHIMU (Two pore calcium channel protein 1 n=4 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LHX7_RHIMU) HSP 1 Score: 63.2 bits (152), Expect = 2.460e-7 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 22 NFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
NFN YP G+V+LF LLVMNNW + + GY+Q + WA +YF+SF ++V L LN++ A + AF
Sbjct: 622 NFNDYPNGMVSLFNLLVMNNWQVWMQGYMQLTGTS-WALVYFISFYLITVLLLLNLVVAFVLEAF 685
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A8K1FIJ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIJ5_PYTOL) HSP 1 Score: 62.4 bits (150), Expect = 4.810e-7 Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 10 YYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
YY NNFN Y + + TLFELL++NNWN+I+ G + W +YFLSF ++V + LN++ A + A+
Sbjct: 884 YYPNNFNDYASAITTLFELLIVNNWNVIMEG--VETVTSKWCRVYFLSFYVIAVVMVLNLVIAFIVEAY 950
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: U5DDC1_AMBTC (Ion_trans domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5DDC1_AMBTC) HSP 1 Score: 59.7 bits (143), Expect = 5.550e-7 Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 13 YENN-----FNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
YENN FN YP G+VTLF LLVM NW + Y+Q + W LYF+SF ++V L LN++ A + AF
Sbjct: 67 YENNYLLFNFNDYPNGMVTLFNLLVMGNWQGWMQSYVQLTGTS-WTLLYFVSFYVITVLLLLNLVVAFVLEAF 138
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: M7Z089_TRIUA (Two pore calcium channel protein 1 n=4 Tax=Triticum TaxID=4564 RepID=M7Z089_TRIUA) HSP 1 Score: 59.7 bits (143), Expect = 5.890e-7 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 22 NFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
NFN YP+G+VTLF LLVM NW + + Y Q + W+ +YF+SF +S+ L LN++ A + AF
Sbjct: 118 NFNDYPSGMVTLFNLLVMGNWQVWMESYWQLTG-SSWSLIYFVSFYLISILLLLNLIVAFVLEAF 181
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Match: A0A453FDE7_AEGTS (Ion_trans domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FDE7_AEGTS) HSP 1 Score: 59.7 bits (143), Expect = 6.060e-7 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 22 NFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLSFITLSVALALNVLTAIFMTAF 216
NFN YP+G+VTLF LLVM NW + + Y Q + W+ +YF+SF +S+ L LN++ A + AF
Sbjct: 84 NFNDYPSGMVTLFNLLVMGNWQVWMESYWQLTG-SSWSLIYFVSFYLISILLLLNLIVAFVLEAF 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14183.2894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14183.2894.1 >prot_H-elongata_contig14183.2894.1 ID=prot_H-elongata_contig14183.2894.1|Name=mRNA_H-elongata_contig14183.2894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp MPYYYENNFNSYPAGLVTLFELLVMNNWNMIITGYIQASPLGMWAYLYFLback to top mRNA from alignment at H-elongata_contig14183:648..3447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14183.2894.1 ID=mRNA_H-elongata_contig14183.2894.1|Name=mRNA_H-elongata_contig14183.2894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2800bp|location=Sequence derived from alignment at H-elongata_contig14183:648..3447- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14183:648..3447- >mRNA_H-elongata_contig14183.2894.1 ID=mRNA_H-elongata_contig14183.2894.1|Name=mRNA_H-elongata_contig14183.2894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at H-elongata_contig14183:648..3447- (Himanthalia elongata Himel1 dioecious)back to top |