mRNA_H-elongata_contig141470.2880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141470.2880.1
Unique NamemRNA_H-elongata_contig141470.2880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141470.2880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141470contigH-elongata_contig141470:1085..1662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141470.2880.1prot_H-elongata_contig141470.2880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141470 1110..1454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.6530504-UTR-H-elongata_contig141470:1084..11091622929841.6530504-UTR-H-elongata_contig141470:1084..1109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141470 1085..1109 +
1691679179.3100035-UTR-H-elongata_contig141470:1084..11091691679179.3100035-UTR-H-elongata_contig141470:1084..1109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141470 1085..1109 +
1622929841.683627-UTR-H-elongata_contig141470:1454..16621622929841.683627-UTR-H-elongata_contig141470:1454..1662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141470 1455..1662 +
1691679179.3370578-UTR-H-elongata_contig141470:1454..16621691679179.3370578-UTR-H-elongata_contig141470:1454..1662Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141470 1455..1662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.6666145-CDS-H-elongata_contig141470:1109..14541622929841.6666145-CDS-H-elongata_contig141470:1109..1454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141470 1110..1454 +
1691679179.3207085-CDS-H-elongata_contig141470:1109..14541691679179.3207085-CDS-H-elongata_contig141470:1109..1454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141470 1110..1454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141470.2880.1

>prot_H-elongata_contig141470.2880.1 ID=prot_H-elongata_contig141470.2880.1|Name=mRNA_H-elongata_contig141470.2880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MSQCKNGNADAEGSISKKQKLDTVNGTAGQWFDKGFKGGSKCFNRTNKKR
FCVKDTRGVCGCNRCIVGEEGAFTRTRICRYCCSSPESHERALLYAAMKL
RKKGSRKLTAIPKR*
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mRNA from alignment at H-elongata_contig141470:1085..1662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141470.2880.1 ID=mRNA_H-elongata_contig141470.2880.1|Name=mRNA_H-elongata_contig141470.2880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=578bp|location=Sequence derived from alignment at H-elongata_contig141470:1085..1662+ (Himanthalia elongata Himel1 dioecious)
GGTGGAGGCGATTGCTGACCATCTCATGTCCCAGTGCAAAAATGGTAACG
CAGATGCTGAAGGGAGTATAAGCAAAAAGCAGAAGTTGGATACTGTCAAT
GGGACGGCGGGGCAGTGGTTCGATAAAGGTTTCAAAGGGGGTTCCAAGTG
CTTCAATCGTACGAACAAAAAGAGATTCTGTGTGAAAGACACGCGTGGCG
TTTGCGGTTGTAATAGGTGTATAGTAGGTGAGGAAGGGGCGTTCACGAGA
ACTAGGATTTGCCGTTACTGTTGTTCGTCCCCGGAATCTCACGAAAGAGC
ATTATTGTATGCGGCTATGAAATTGAGAAAAAAGGGATCGCGGAAGCTCA
CCGCCATTCCCAAAAGGTAGTCAGTCCCCTATGGATTCGTAGCGGGGTGG
GGGGCAATAGGGTTATAAAACAATGTTCGGAAAGTGTTGGAGAGCGAAGG
TCGTCGAGAAATTTGTATTTTAAAAAATCAGGTTATCCATTGCAAGTGTT
CCGAAACAAGGTGTTTGGTGTGCTCAATGCGTGGCGAGATTGGATACAAG
TACATGCAATAATGTAGTTGAAATAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig141470:1085..1662+

>mRNA_H-elongata_contig141470.2880.1 ID=mRNA_H-elongata_contig141470.2880.1|Name=mRNA_H-elongata_contig141470.2880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig141470:1085..1662+ (Himanthalia elongata Himel1 dioecious)
ATGTCCCAGTGCAAAAATGGTAACGCAGATGCTGAAGGGAGTATAAGCAA
AAAGCAGAAGTTGGATACTGTCAATGGGACGGCGGGGCAGTGGTTCGATA
AAGGTTTCAAAGGGGGTTCCAAGTGCTTCAATCGTACGAACAAAAAGAGA
TTCTGTGTGAAAGACACGCGTGGCGTTTGCGGTTGTAATAGGTGTATAGT
AGGTGAGGAAGGGGCGTTCACGAGAACTAGGATTTGCCGTTACTGTTGTT
CGTCCCCGGAATCTCACGAAAGAGCATTATTGTATGCGGCTATGAAATTG
AGAAAAAAGGGATCGCGGAAGCTCACCGCCATTCCCAAAAGGTAGATGTC
CCAGTGCAAAAATGGTAACGCAGATGCTGAAGGGAGTATAAGCAAAAAGC
AGAAGTTGGATACTGTCAATGGGACGGCGGGGCAGTGGTTCGATAAAGGT
TTCAAAGGGGGTTCCAAGTGCTTCAATCGTACGAACAAAAAGAGATTCTG
TGTGAAAGACACGCGTGGCGTTTGCGGTTGTAATAGGTGTATAGTAGGTG
AGGAAGGGGCGTTCACGAGAACTAGGATTTGCCGTTACTGTTGTTCGTCC
CCGGAATCTCACGAAAGAGCATTATTGTATGCGGCTATGAAATTGAGAAA
AAAGGGATCGCGGAAGCTCACCGCCATTCCCAAAAGGTAG
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