mRNA_H-elongata_contig140916.2836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig140916.2836.1
Unique Name	mRNA_H-elongata_contig140916.2836.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 2.870e-40
Identity = 76/118 (64.41%), Postives = 88/118 (74.58%), Query Frame = 1

Query:    4 GDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            G  S  ++ SSTNLA  I+G+ KFDG++ AEFK  M K CVVLGVTR+DIL LLK + KP   DTAAF SY R NEDLYA+LYLLVELPA  S QKHE+D+   GDGQAA  ELC+NY
Sbjct:    9 GGGSAFASDSSTNLATVIKGLKKFDGKDPAEFKTWMKKFCVVLGVTRKDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILYLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNY 126

[Close]

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.080e-36
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1

Query:    4 GDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            G  S  ++ SSTNLA  I+G+ KFDG++ AEFK  M K CVVLGVTR+DIL LLK + KP   DTAAF SY R NEDLYA L+LL+E PA  S QKHE+D+   GDGQAA  ELC+NY
Sbjct:    9 GGGSAFASDSSTNLATVIKGLKKFDGKDPAEFKTWMKKFCVVLGVTRKDILPLLKKQRKPDHADTAAFDSYTRANEDLYASLFLLMEPPAALSIQKHEDDTGISGDGQAAFEELCNNY 126

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BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.060e-36
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1

Query:    4 GDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            G  S  ++ SSTNLA  I+G+ KFDG++ AEFK  M K CVVLGVTR+DIL LLK + KP   DTAAF SY R NEDLYA+L+L VELPA  S QKHE+D+   GDGQAA  ELC+NY
Sbjct:   27 GGGSAFASDSSTNLATVIKGLKKFDGKDPAEFKTWMKKFCVVLGVTRKDILPLLKEQRKPDPADTAAFGSYARANEDLYAILFLQVELPAALSIQKHEDDTGISGDGQAAFEELCNNY 144

[Close]

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 7.310e-36
Identity = 72/109 (66.06%), Postives = 82/109 (75.23%), Query Frame = 1

Query:   31 SSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            SSTNLA  I+G+ KFDG++ AEFK  M K CV LGVTR DIL LLK + KP   DTAAF SY R NEDLYA+L+LLVELPA  S QKHE+D+   GDGQAA  ELC+NY
Sbjct:   29 SSTNLATVIKGLKKFDGKDPAEFKTWMKKFCVALGVTRNDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNY 137

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BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5K8X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.350e-34
Identity = 72/118 (61.02%), Postives = 85/118 (72.03%), Query Frame = 1

Query:    4 GDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            G  S  ++ SSTNLA  I+G+ KFDG++ AEFK  MNK  VVLGVTR+D L LLK + KP   +TAAF SY R NEDLYA+L+LLVELP   S QKHE D+   GDGQAA  ELC+NY
Sbjct:    9 GGGSAFASDSSTNLATVIKGLKKFDGKDPAEFKTWMNKFYVVLGVTRKDTLALLKKQRKPDPVNTAAFDSYARANEDLYAILFLLVELPTALSVQKHEGDTGISGDGQAAFEELCNNY 126

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BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5KPG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.420e-34
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 1

Query:   55 IRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            IRG+ KFDG++ AEFK  M K CVVLGVT +DIL LLK + KP   DTAAF SY R NE+LYA+L+LLVELPA  S QKHE+D+   GDGQAA  ELC+NY
Sbjct:    2 IRGLKKFDGKDPAEFKTWMKKFCVVLGVTTKDILPLLKKQRKPDPADTAAFDSYTRANENLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNY 102

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BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.340e-33
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 1

Query:    1 MGDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            MGD S     +++NL+NTIRG+ KFDGRN AEF+  M +LCVVLGV RRDIL LLK   +PA TD   +A+Y ++NEDLYA+LYLLVELPA  S QKHE+DS+  GDGQAA  EL  NY
Sbjct:    1 MGDYSPSD--NTSNLSNTIRGLKKFDGRNPAEFEEWMKRLCVVLGVLRRDILPLLKGRSRPAETDDD-YAAYCKSNEDLYAILYLLVELPASLSVQKHEDDSEISGDGQAAFEELNLNY 116

[Close]

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5K6P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.360e-32
Identity = 68/118 (57.63%), Postives = 84/118 (71.19%), Query Frame = 1

Query:    4 GDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            G  S  ++ SST LA  I+G+ KFD ++ AEFK  M K CVVLGVTR+DIL LLK +  P   DTAAF SY + NEDLYA+L+LLV+LPA  S Q+H+ D+   GDGQAA  ELC+NY
Sbjct:   15 GGGSAFASDSSTKLATVIKGLKKFDRKDPAEFKIWMKKFCVVLGVTRKDILPLLKKQRMPDPADTAAFDSYTKANEDLYAILFLLVKLPAASSVQRHKADTGISGDGQAAFEELCNNY 132

[Close]

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5JD68_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD68_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.090e-31
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 1

Query:    7 DISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            ++   S   STNLA  I+G+ +FDG++ A+FK  M K CVVLGVTR++IL L K + KP   DTAAF SY R NED +A+++LLVELPA  S QKHE+ +   GDGQAA  ELC+NY
Sbjct:   74 EVEARSPAISTNLAAVIKGLKEFDGKDPADFKTWMKKFCVVLGVTRKNILPLQKKQKKPDPADTAAFDSYTRANEDQHAIIFLLVELPAALSVQKHEDGTGISGDGQAASEELCNNY 190

[Close]

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Match: A0A6H5KDC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.020e-29
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 1

Query:  109 MNKLCVVLGVTRRDILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHENDSKTCGDGQAACMELCDNY 357
            M K CVVLGVTR+DIL LLK + KP   DTAAF SY R NEDLYA+L+LLVELPA  S QKHEND+   GDGQAA  ELC+NY
Sbjct:    1 MKKSCVVLGVTRKDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHENDTGISGDGQAAFEELCNNY 83

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot

BLAST of mRNA_H-elongata_contig140916.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVX0_9PHAE	2.870e-40	64.41	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	1.080e-36	61.86	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5L580_9PHAE	2.060e-36	62.71	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J8P7_9PHAE	7.310e-36	66.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8X5_9PHAE	1.350e-34	61.02	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPG9_9PHAE	9.420e-34	65.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSB5_9PHAE	1.340e-33	62.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6P4_9PHAE	5.360e-32	57.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JD68_9PHAE	2.090e-31	55.56	Peptidase A2 domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5KDC9_9PHAE	4.020e-29	69.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig140916	contig	H-elongata_contig140916:1231..1587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-05_000750.1
Hectar predicted targeting category	other localisation
Exons	1
Model size	357
Cds size	357
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929837.3644898-CDS-H-elongata_contig140916:1230..1587	1622929837.3644898-CDS-H-elongata_contig140916:1230..1587	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig140916 1231..1587 +
1691679177.6846046-CDS-H-elongata_contig140916:1230..1587	1691679177.6846046-CDS-H-elongata_contig140916:1230..1587	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig140916 1231..1587 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig140916.2836.1	prot_H-elongata_contig140916.2836.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig140916 1231..1587 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig140916:1231..1587+
coding sequence from alignment at H-elongata_contig140916:1231..1587+

protein sequence of mRNA_H-elongata_contig140916.2836.1

>prot_H-elongata_contig140916.2836.1 ID=prot_H-elongata_contig140916.2836.1|Name=mRNA_H-elongata_contig140916.2836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MGDISEHSAYSSTNLANTIRGVNKFDGRNLAEFKGCMNKLCVVLGVTRRD
ILLLLKNEPKPATTDTAAFASYKRTNEDLYAMLYLLVELPAFPSGQKHEN
DSKTCGDGQAACMELCDNY

mRNA from alignment at H-elongata_contig140916:1231..1587+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig140916.2836.1 ID=mRNA_H-elongata_contig140916.2836.1|Name=mRNA_H-elongata_contig140916.2836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig140916:1231..1587+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGACATCAGCGAACACTCCGCGTACTCCAGCACCAACCTCGCGAA
TACCATTCGCGGCGTAAACAAGTTCGACGGGAGGAACCTTGCCGAATTTA
AAGGATGTATGAATAAACTTTGCGTCGTCCTCGGCGTCACTCGCAGGGAT
ATCCTCCTGCTCCTGAAGAACGAACCCAAGCCGGCCACGACGGACACCGC
CGCTTTCGCGAGCTACAAAAGGACAAACGAGGATTTATACGCCATGCTGT
ACTTACTGGTCGAGCTACCGGCATTCCCTTCAGGGCAGAAACATGAGAAC
GACAGCAAGACCTGCGGCGACGGACAGGCTGCTTGCATGGAACTCTGTGA
TAACTAC

Coding sequence (CDS) from alignment at H-elongata_contig140916:1231..1587+

>mRNA_H-elongata_contig140916.2836.1 ID=mRNA_H-elongata_contig140916.2836.1|Name=mRNA_H-elongata_contig140916.2836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig140916:1231..1587+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGACATCAGCGAACACTCCGCGTACTCCAGCACCAACCTCGCGAA
TACCATTCGCGGCGTAAACAAGTTCGACGGGAGGAACCTTGCCGAATTTA
AAGGATGTATGAATAAACTTTGCGTCGTCCTCGGCGTCACTCGCAGGGAT
ATCCTCCTGCTCCTGAAGAACGAACCCAAGCCGGCCACGACGGACACCGC
CGCTTTCGCGAGCTACAAAAGGACAAACGAGGATTTATACGCCATGCTGT
ACTTACTGGTCGAGCTACCGGCATTCCCTTCAGGGCAGAAACATGAGAAC
GACAGCAAGACCTGCGGCGACGGACAGGCTGCTTGCATGGAACTCTGTGA
TAACTACATGGGCGACATCAGCGAACACTCCGCGTACTCCAGCACCAACC
TCGCGAATACCATTCGCGGCGTAAACAAGTTCGACGGGAGGAACCTTGCC
GAATTTAAAGGATGTATGAATAAACTTTGCGTCGTCCTCGGCGTCACTCG
CAGGGATATCCTCCTGCTCCTGAAGAACGAACCCAAGCCGGCCACGACGG
ACACCGCCGCTTTCGCGAGCTACAAAAGGACAAACGAGGATTTATACGCC
ATGCTGTACTTACTGGTCGAGCTACCGGCATTCCCTTCAGGGCAGAAACA
TGAGAACGACAGCAAGACCTGCGGCGACGGACAGGCTGCTTGCATGGAAC
TCTGTGATAACTAC