mRNA_H-elongata_contig140767.2826.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: D7FNE6_ECTSI (NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNE6_ECTSI) HSP 1 Score: 136 bits (343), Expect = 1.690e-37 Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREGD-GL-EMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
+GDTV+MRGPKG+LTYLG G+F ++RR+DR QVRKLGMMAGGTGITPMLQ+ISA+MREG GL EMSLIFANKSEDDILLRDMIEKL F
Sbjct: 133 IGDTVDMRGPKGNLTYLGTGNFSIRRRDDR-QVRKLGMMAGGTGITPMLQVISAIMREGSTGLVEMSLIFANKSEDDILLRDMIEKLAASNPNF 225
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A835ZPK9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPK9_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.430e-30 Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREGDGLEMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
VGDT++M GPKGSL Y GKG F +++REDR QV+++GM+AGGTGITPMLQI++A+ +E +E+SLIFAN+SE DILLRDMIE + F
Sbjct: 152 VGDTIDMMGPKGSLEYKGKGLFSIRKREDR-QVKRIGMLAGGTGITPMLQIMNAIRKENSNIELSLIFANQSEQDILLRDMIEAFPMKHANF 242
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A6V1RBP2_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBP2_HETAK) HSP 1 Score: 114 bits (285), Expect = 1.310e-28 Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRRED--RKQVRKLGMMAGGTGITPMLQIISAVMREGDGLEMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
+GDT+EMRGPKG L Y G G+F +K+ D K V K+GMMAGGTGITPMLQ+I A+++EG G+EMSL+FAN+SEDDILLR +++L + F
Sbjct: 161 IGDTLEMRGPKGHLDYKGSGNFTLKKLTDVTEKTVTKVGMMAGGTGITPMLQVIKAILKEGSGIEMSLLFANQSEDDILLRADLDELARKHANF 254
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A2R5GNS8_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNS8_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.540e-26 Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEKLVCIY-GRF 276
VGDT++++GP G YLGKG+F++ R+ ++V+K+GM+AGGTGITPMLQ+I+A+M + D E+SLIFANK+EDDIL+RDM+EKL GRF
Sbjct: 155 VGDTIDVQGPFGLYEYLGKGTFKIMRKT--REVKKVGMLAGGTGITPMLQVITAIMSDDSDATEVSLIFANKTEDDILVRDMLEKLAAENPGRF 246
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A7S1BKY8_9STRA (NADH-cytochrome b5 reductase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKY8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.690e-23 Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFR----VKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKLVCIY 267
VGDT++M+GPKG +TYLG G FR ++ ++ +Q + M+AGGTGITPMLQ+I AV+R D +SL+FANKSE+DILLRD +E LV Y
Sbjct: 130 VGDTLDMKGPKGHMTYLGYGKFRKHAYLRAPDETRQAKHFAMIAGGTGITPMLQLIKAVLRNPKDETTLSLLFANKSENDILLRDELETLVAKY 223
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A369SJJ9_9METZ (Cytochrome-b5 reductase (Fragment) n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SJJ9_9METZ) HSP 1 Score: 98.2 bits (243), Expect = 3.210e-22 Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR----KQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKL 255
+GDT+++RGP G +TYLG+G +K + K V+KLG++AGGTGITPMLQII AV+++ D E+SL+FAN++E+DILLRD +E++
Sbjct: 194 IGDTIDVRGPSGKVTYLGRGKLSIKESPKKDAVIKNVKKLGLIAGGTGITPMLQIIRAVLKDPEDKTELSLLFANQTENDILLRDHLEEI 283
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: B3RLU5_TRIAD (NADH-cytochrome b5 reductase n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RLU5_TRIAD) HSP 1 Score: 98.2 bits (243), Expect = 3.760e-22 Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR----KQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKL 255
+GDT+++RGP G +TYLG+G +K + K V+KLG++AGGTGITPMLQII AV+++ D E+SL+FAN++E+DILLRD +E++
Sbjct: 209 IGDTIDVRGPSGKVTYLGRGKLSIKESPKKDAVIKNVKKLGLIAGGTGITPMLQIIRAVLKDPEDKTELSLLFANQTENDILLRDHLEEI 298
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A087UKW1_STEMI (Cytochrome-b5 reductase (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UKW1_STEMI) HSP 1 Score: 96.3 bits (238), Expect = 5.010e-22 Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQ----VRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKLVCIY 267
+GDT+++RGP G L YLGKG F VK + V+++GM+AGGTGITPMLQ+I +++ D LEMSL+FAN++EDDILLR +E + Y
Sbjct: 138 IGDTIDVRGPSGRLIYLGKGKFSVKATPKSQPTVHVVKRVGMIAGGTGITPMLQLIKHALKDPEDNLEMSLLFANQTEDDILLRSELEDIAASY 231
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: C1FJ74_MICCC (NADH-cytochrome b5 reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJ74_MICCC) HSP 1 Score: 97.1 bits (240), Expect = 5.140e-22 Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR------KQVRKLGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEK 252
+GDT++ GPKG Y GKG+F +KR + + ++ +K+GM+AGGTGITPMLQ++ AV R+ GD +MSLIFAN++E+DILLRD ++K
Sbjct: 157 IGDTLDFSGPKGRYEYRGKGTFAIKRLKSQGGGFEIRKAKKIGMIAGGTGITPMLQVMRAVFRDKGDKTDMSLIFANQTEEDILLRDELDK 247
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: UPI0010FCBB4E (NADH-cytochrome b5 reductase 3-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCBB4E) HSP 1 Score: 96.3 bits (238), Expect = 7.520e-22 Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query: 1 VGDTVEMRGPKGSLTYLGKGSFRVKRR-EDRKQVRK---LGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEKL 255
VGDTV++RGP G LTYLG+G F +K +D QVR+ +G++AGGTGITPMLQIISAV+++ GD ++L+FAN++E DIL+R +E L
Sbjct: 140 VGDTVDIRGPSGKLTYLGRGKFSIKENNKDPVQVRRAKNVGLIAGGTGITPMLQIISAVIKDAGDNTNLNLLFANQTEKDILVRPELEML 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140767.2826.1 >prot_H-elongata_contig140767.2826.1 ID=prot_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp MRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMback to top mRNA from alignment at H-elongata_contig140767:44..1147- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140767.2826.1 ID=mRNA_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig140767:44..1147- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140767:44..1147- >mRNA_H-elongata_contig140767.2826.1 ID=mRNA_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig140767:44..1147- (Himanthalia elongata Himel1 dioecious)back to top |