mRNA_H-elongata_contig140767.2826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140767.2826.1
Unique NamemRNA_H-elongata_contig140767.2826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: D7FNE6_ECTSI (NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNE6_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.690e-37
Identity = 73/94 (77.66%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREGD-GL-EMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
            +GDTV+MRGPKG+LTYLG G+F ++RR+DR QVRKLGMMAGGTGITPMLQ+ISA+MREG  GL EMSLIFANKSEDDILLRDMIEKL      F
Sbjct:  133 IGDTVDMRGPKGNLTYLGTGNFSIRRRDDR-QVRKLGMMAGGTGITPMLQVISAIMREGSTGLVEMSLIFANKSEDDILLRDMIEKLAASNPNF 225          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A835ZPK9_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPK9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.430e-30
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREGDGLEMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
            VGDT++M GPKGSL Y GKG F +++REDR QV+++GM+AGGTGITPMLQI++A+ +E   +E+SLIFAN+SE DILLRDMIE     +  F
Sbjct:  152 VGDTIDMMGPKGSLEYKGKGLFSIRKREDR-QVKRIGMLAGGTGITPMLQIMNAIRKENSNIELSLIFANQSEQDILLRDMIEAFPMKHANF 242          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A6V1RBP2_HETAK (NADH-cytochrome b5 reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RBP2_HETAK)

HSP 1 Score: 114 bits (285), Expect = 1.310e-28
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRRED--RKQVRKLGMMAGGTGITPMLQIISAVMREGDGLEMSLIFANKSEDDILLRDMIEKLVCIYGRF 276
            +GDT+EMRGPKG L Y G G+F +K+  D   K V K+GMMAGGTGITPMLQ+I A+++EG G+EMSL+FAN+SEDDILLR  +++L   +  F
Sbjct:  161 IGDTLEMRGPKGHLDYKGSGNFTLKKLTDVTEKTVTKVGMMAGGTGITPMLQVIKAILKEGSGIEMSLLFANQSEDDILLRADLDELARKHANF 254          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A2R5GNS8_9STRA (NADH-cytochrome b5 reductase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNS8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.540e-26
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEKLVCIY-GRF 276
            VGDT++++GP G   YLGKG+F++ R+   ++V+K+GM+AGGTGITPMLQ+I+A+M +  D  E+SLIFANK+EDDIL+RDM+EKL     GRF
Sbjct:  155 VGDTIDVQGPFGLYEYLGKGTFKIMRKT--REVKKVGMLAGGTGITPMLQVITAIMSDDSDATEVSLIFANKTEDDILVRDMLEKLAAENPGRF 246          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A7S1BKY8_9STRA (NADH-cytochrome b5 reductase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKY8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.690e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFR----VKRREDRKQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKLVCIY 267
            VGDT++M+GPKG +TYLG G FR    ++  ++ +Q +   M+AGGTGITPMLQ+I AV+R   D   +SL+FANKSE+DILLRD +E LV  Y
Sbjct:  130 VGDTLDMKGPKGHMTYLGYGKFRKHAYLRAPDETRQAKHFAMIAGGTGITPMLQLIKAVLRNPKDETTLSLLFANKSENDILLRDELETLVAKY 223          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A369SJJ9_9METZ (Cytochrome-b5 reductase (Fragment) n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SJJ9_9METZ)

HSP 1 Score: 98.2 bits (243), Expect = 3.210e-22
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR----KQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKL 255
            +GDT+++RGP G +TYLG+G   +K    +    K V+KLG++AGGTGITPMLQII AV+++  D  E+SL+FAN++E+DILLRD +E++
Sbjct:  194 IGDTIDVRGPSGKVTYLGRGKLSIKESPKKDAVIKNVKKLGLIAGGTGITPMLQIIRAVLKDPEDKTELSLLFANQTENDILLRDHLEEI 283          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: B3RLU5_TRIAD (NADH-cytochrome b5 reductase n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RLU5_TRIAD)

HSP 1 Score: 98.2 bits (243), Expect = 3.760e-22
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR----KQVRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKL 255
            +GDT+++RGP G +TYLG+G   +K    +    K V+KLG++AGGTGITPMLQII AV+++  D  E+SL+FAN++E+DILLRD +E++
Sbjct:  209 IGDTIDVRGPSGKVTYLGRGKLSIKESPKKDAVIKNVKKLGLIAGGTGITPMLQIIRAVLKDPEDKTELSLLFANQTENDILLRDHLEEI 298          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: A0A087UKW1_STEMI (Cytochrome-b5 reductase (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087UKW1_STEMI)

HSP 1 Score: 96.3 bits (238), Expect = 5.010e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDRKQ----VRKLGMMAGGTGITPMLQIISAVMREG-DGLEMSLIFANKSEDDILLRDMIEKLVCIY 267
            +GDT+++RGP G L YLGKG F VK     +     V+++GM+AGGTGITPMLQ+I   +++  D LEMSL+FAN++EDDILLR  +E +   Y
Sbjct:  138 IGDTIDVRGPSGRLIYLGKGKFSVKATPKSQPTVHVVKRVGMIAGGTGITPMLQLIKHALKDPEDNLEMSLLFANQTEDDILLRSELEDIAASY 231          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: C1FJ74_MICCC (NADH-cytochrome b5 reductase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FJ74_MICCC)

HSP 1 Score: 97.1 bits (240), Expect = 5.140e-22
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRREDR------KQVRKLGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEK 252
            +GDT++  GPKG   Y GKG+F +KR + +      ++ +K+GM+AGGTGITPMLQ++ AV R+ GD  +MSLIFAN++E+DILLRD ++K
Sbjct:  157 IGDTLDFSGPKGRYEYRGKGTFAIKRLKSQGGGFEIRKAKKIGMIAGGTGITPMLQVMRAVFRDKGDKTDMSLIFANQTEEDILLRDELDK 247          
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Match: UPI0010FCBB4E (NADH-cytochrome b5 reductase 3-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCBB4E)

HSP 1 Score: 96.3 bits (238), Expect = 7.520e-22
Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 VGDTVEMRGPKGSLTYLGKGSFRVKRR-EDRKQVRK---LGMMAGGTGITPMLQIISAVMRE-GDGLEMSLIFANKSEDDILLRDMIEKL 255
            VGDTV++RGP G LTYLG+G F +K   +D  QVR+   +G++AGGTGITPMLQIISAV+++ GD   ++L+FAN++E DIL+R  +E L
Sbjct:  140 VGDTVDIRGPSGKLTYLGRGKFSIKENNKDPVQVRRAKNVGLIAGGTGITPMLQIISAVIKDAGDNTNLNLLFANQTEKDILVRPELEML 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140767.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE6_ECTSI1.690e-3777.66NADH-cytochrome b5 reductase n=2 Tax=Ectocarpus Ta... [more]
A0A835ZPK9_9STRA3.430e-3061.96NADH-cytochrome b5 reductase n=1 Tax=Tribonema min... [more]
A0A6V1RBP2_HETAK1.310e-2859.57NADH-cytochrome b5 reductase n=1 Tax=Heterosigma a... [more]
A0A2R5GNS8_9STRA2.540e-2658.51NADH-cytochrome b5 reductase n=1 Tax=Hondaea ferme... [more]
A0A7S1BKY8_9STRA4.690e-2355.32NADH-cytochrome b5 reductase n=2 Tax=Corethron hys... [more]
A0A369SJJ9_9METZ3.210e-2253.33Cytochrome-b5 reductase (Fragment) n=1 Tax=Trichop... [more]
B3RLU5_TRIAD3.760e-2253.33NADH-cytochrome b5 reductase n=1 Tax=Trichoplax ad... [more]
A0A087UKW1_STEMI5.010e-2252.13Cytochrome-b5 reductase (Fragment) n=2 Tax=Stegody... [more]
C1FJ74_MICCC5.140e-2252.75NADH-cytochrome b5 reductase n=1 Tax=Micromonas co... [more]
UPI0010FCBB4E7.520e-2256.67NADH-cytochrome b5 reductase 3-like n=1 Tax=Acropo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140767contigH-elongata_contig140767:44..1147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue4.5e-27
Seed eggNOG ortholog2880.D7FNE6
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
EggNOG free text desc.cytochrome-b5 reductase activity, acting on NAD(P)H
EggNOG OGsCOG0543@1,KOG0534@2759
EC1.6.2.2
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRiboflavin synthase-like beta-barrel
Ec32 orthologEc-22_001440.1
Exons2
Model size309
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140767.2826.1prot_H-elongata_contig140767.2826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140767 44..1129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.5479946-CDS-H-elongata_contig140767:43..2591622929836.5479946-CDS-H-elongata_contig140767:43..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140767 44..259 -
1691679177.3595097-CDS-H-elongata_contig140767:43..2591691679177.3595097-CDS-H-elongata_contig140767:43..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140767 44..259 -
1622929836.5620654-CDS-H-elongata_contig140767:1054..11291622929836.5620654-CDS-H-elongata_contig140767:1054..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140767 1055..1129 -
1691679177.371411-CDS-H-elongata_contig140767:1054..11291691679177.371411-CDS-H-elongata_contig140767:1054..1129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140767 1055..1129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.57573-UTR-H-elongata_contig140767:1129..11471622929836.57573-UTR-H-elongata_contig140767:1129..1147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140767 1130..1147 -
1691679177.378773-UTR-H-elongata_contig140767:1129..11471691679177.378773-UTR-H-elongata_contig140767:1129..1147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140767 1130..1147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140767.2826.1

>prot_H-elongata_contig140767.2826.1 ID=prot_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MRGPKGSLTYLGKGSFRVKRREDRKQVRKLGMMAGGTGITPMLQIISAVM
REGDGLEMSLIFANKSEDDILLRDMIEKLVCIYGRFFFFFFFFFYV*
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mRNA from alignment at H-elongata_contig140767:44..1147-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140767.2826.1 ID=mRNA_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-elongata_contig140767:44..1147- (Himanthalia elongata Himel1 dioecious)
GTGGGAGACACGGTGGAGATGCGGGGGCCAAAGGGCAGCCTAACCTACCT GGGGAAGGGGTCGTTCCGGGTAAAGCGCAGGGAAGATAGGAAGGTAAGGC ATCAGTCATTTCCTAGCCTGTCCCGGAGGAAAGTAAGGGGGCCATTCGAT TTAAATATGGTTGCCTTTCGCTCCTCGGGGAGACGACGAGGCGATGCGTC GGAGCTTAGCTGGTCGGAGGAAGCTTGTTGTACTGTACTTGAAGAAGCTT TTTTATTTTCCCTTTTGCGAGGTGGGATTTTTCTGGTGTTCGAAAGATGC AGCAGATGCGGGTGGGTTCTTTTCCCCTAACCGCTTCTAAAGAAGGGTAC CGCAAGTGACGGGGTATACTGTAGCTAGTATACAACACGTCTTAGGTGAC GGGGTATACTGTAGCTAGTATACAACACGTCTCAGGTGACGGGGTGAACT GTAATTGGTATTTAACACGCCGTAGGTGACGGAGTATACTGTAGCTAGTA TATAACACGCCGTAGATGACGGGGTACACTGTAATTAATATATAATACAC CGTAGGTGACGGGGTATACTATAGTTAGTATATAACGCACCGAAGATGAC GGGGTATACTGTAGCTAGTATAACACGGCGTAGATGACGGAGTATACTGT AGTTAGTATATAAAACACCACGTGGGTGACAGGATAGTCTATACTGTAAT ATGCGTTATATTTATATGTACAGAGACCCCTTCGTGGAGCCCGGTCAGCA CAGCGGGAATCGAGCGACGGAGTCGACTCTCGTCAACGCCAACCCACCCT GATTTTCGCGTGATTTGAAAATTCGTTTTTATGTGTCTTCGCGAGGATCC TCGCCCCACCCATCCCCAACACACCTCAAACTCCCGAGCAGGTGCGAAAA CTGGGCATGATGGCCGGCGGCACAGGCATCACCCCTATGCTTCAGATCAT CAGCGCGGTCATGCGGGAAGGAGACGGGCTGGAGATGAGCCTCATCTTCG CCAACAAGTCGGAGGACGACATCTTGCTCCGAGACATGATCGAGAAACTG GTTTGTATATATGGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACGT TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig140767:44..1147-

>mRNA_H-elongata_contig140767.2826.1 ID=mRNA_H-elongata_contig140767.2826.1|Name=mRNA_H-elongata_contig140767.2826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig140767:44..1147- (Himanthalia elongata Himel1 dioecious)
ATGCGGGGGCCAAAGGGCAGCCTAACCTACCTGGGGAAGGGGTCGTTCCG
GGTAAAGCGCAGGGAAGATAGGAAGATGCGGGGGCCAAAGGGCAGCCTAA
CCTACCTGGGGAAGGGGTCGTTCCGGGTAAAGCGCAGGGAAGATAGGAAG
CAGGTGCGAAAACTGGGCATGATGGCCGGCGGCACAGGCATCACCCCTAT
GCTTCAGATCATCAGCGCGGTCATGCGGGAAGGAGACGGGCTGGAGATGA
GCCTCATCTTCGCCAACAAGTCGGAGGACGACATCTTGCTCCGAGACATG
ATCGAGAAACTGGTTTGTATATATGGACGTTTTTTTTTTTTTTTTTTTTT
TTTTTTCTACGTTTAACAGGTGCGAAAACTGGGCATGATGGCCGGCGGCA
CAGGCATCACCCCTATGCTTCAGATCATCAGCGCGGTCATGCGGGAAGGA
GACGGGCTGGAGATGAGCCTCATCTTCGCCAACAAGTCGGAGGACGACAT
CTTGCTCCGAGACATGATCGAGAAACTGGTTTGTATATATGGACGTTTTT
TTTTTTTTTTTTTTTTTTTTTTCTACGTTTAA
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