mRNA_H-elongata_contig14069.2821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14069.2821.1
Unique NamemRNA_H-elongata_contig14069.2821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: D7FLK9_ECTSI (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLK9_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 2.230e-98
Identity = 179/301 (59.47%), Postives = 205/301 (68.11%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVA-GKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRILFAATVTTPSARFPTALSVRGSPLFSSPIGADADATTPPTIDDFPRIANSVSFSSPKEFGEDSLAGGSPRNGHVSPESLIQPPSVVESVRVVLVE 900
            W+FWAFHLNTN KD RA AG R DSRGHTFPAKVSPPFLKRRVGVFSTR+PHRPNP+GVSLCKV+ VNAAERSI+LSGVDLVDGTPV DIKPYVPDYD P  R  P +     G   V VA W+ ASV+HR  V+W PDAE QL+E C+  + +G+GPRM+FF GD+ GA+ AITE+LSVDVRS RKTRE   AP CVLLFDGLR+ FA TV+   A   TA S   S   S    A A +    T          V   SP+  G+D  A G  RN   SP     PP  VE++RV+ VE
Sbjct:  137 WVFWAFHLNTNQKDARAHAGMRPDSRGHTFPAKVSPPFLKRRVGVFSTRTPHRPNPLGVSLCKVEEVNAAERSIKLSGVDLVDGTPVFDIKPYVPDYDRPRARDGPVSVGTGDGDDGVRVAAWVEASVKHRRAVQWAPDAEVQLEEACSDRRRKGDGPRMRFFSGDHEGAKMAITESLSVDVRSIRKTREAVVAPSCVLLFDGLRVEFATTVSLSIA---TAASSTPSSSLSGGSAAAATSEVEGT--------EGVPCVSPR--GDDREATGGGRNS--SP-----PPVSVETIRVLSVE 417          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: T0RI72_SAPDV (TsaA-like domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RI72_SAPDV)

HSP 1 Score: 167 bits (423), Expect = 1.400e-43
Identity = 94/218 (43.12%), Postives = 132/218 (60.55%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDS-RGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRILFAATVTTPSAR 651
            W+ + FH NTN K+ RA  G R ++   HTF AKVSPP LK+R+G+F+TR+PHRPNPIG++L K++ V+ A R++ +SG+DLVDGTP++D+KPYVP YDC     +P         DV VA WI A+V  +  V W P+A+A +  +    +         F+  D      AIT+ L+VDVRS  +TR++AS     L FD L + +    T P  R
Sbjct:  122 WLTFVFHCNTNGKNARAHTGLRTEAGTAHTFRAKVSPPMLKQRMGIFATRTPHRPNPIGITLAKIERVDKAARTVVVSGIDLVDGTPIVDLKPYVPAYDC----MEP--------TDVAVAPWIAATVSTQRSVAWVPEAKATVLRLSRPSR---------FYANDTARLCDAITQVLAVDVRSVEQTRKMASR-VNHLAFDDLDVQYEVQDTHPQVR 317          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A067CDS7_SAPPC (TsaA-like domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CDS7_SAPPC)

HSP 1 Score: 165 bits (417), Expect = 9.600e-43
Identity = 95/208 (45.67%), Postives = 127/208 (61.06%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDS-RGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRILF 621
            WI + FH NTN K+ RA AG R ++   HTF AKVSPP LK+R+GVF+TR+PHRPNPIG++L KV+ V+ A R++ +SG+DLVDGTP++D+KPYVP YDC     DP         DV VA WI A+V  +  V W P+A   L  +              F+  D+     AIT+ L+VDVRS  +TR++A      L FD L + +
Sbjct:  122 WITFIFHCNTNSKNARAHAGLRTEAGTAHTFRAKVSPPMLKQRMGVFATRTPHRPNPIGITLAKVERVDKAARTVVVSGIDLVDGTPIVDLKPYVPAYDC----MDP--------TDVAVAPWIAATVSTQRSVAWAPEALDALLHLSRPST---------FYAEDHARLCDAITQVLAVDVRSVEQTRKMAGR-VNHLAFDALDVQY 307          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A1V9YMY9_9STRA (TsaA-like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMY9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.240e-41
Identity = 86/190 (45.26%), Postives = 118/190 (62.11%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGD-SRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTRE 567
            WI + FH NTN K+ RA AG R + +  HTF AKVSPP LK+R+G+F+TR+PHRPNPIG++L +++ V+    ++ +SG+DLVDGTPVLD+KPYVP YDC                DV VA WI A+V  +  V W   A A +              R +F++ D  G R+AITE L+VDVRS+ + ++
Sbjct:  113 WITFVFHTNTNGKNARAHAGLRTEGATAHTFRAKVSPPMLKKRLGIFATRTPHRPNPIGITLARIESVDKQRCTVFVSGIDLVDGTPVLDLKPYVPAYDC------------VPTADVAVASWIAATVATQRSVMWTDQAIADITANAR---------RTRFYKDDAPGLRQAITEVLAVDVRSADQAKK 281          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A836CCT4_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.510e-40
Identity = 92/226 (40.71%), Postives = 125/226 (55.31%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSR--------GHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVA----------SAPFCVLLFDGLRILFA 624
            W+F+ FHLN N + TR   GG G             TFPAKV+PPFLKR+VG+F+TRSPHRPN IG+SLC++D V+ A  +I L G+DLV GTPVLDIKP+VP YD                   HVA W+ +S++H   V WEP A+ Q+  +            +  ++ +   A  AI E L VD+RS+  T++ A          S+   +LLFD L + +A
Sbjct:  111 WVFFVFHLNNNQRWTRGLTGGGGTGDDAAALRKVAGTFPAKVTPPFLKRKVGLFATRSPHRPNNIGLSLCRIDRVDMAGLAIHLRGIDLVHGTPVLDIKPFVPAYDA--------------VTPAHVAPWVESSLQHNRAVLWEPGAQEQVTALA---------AALHLYKDEPQEAIAAIAEALEVDIRSAFMTKKAAGQKGGGSIKGSSSSGILLFDTLAVHWA 313          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A2D4C449_PYTIN (TsaA-like domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C449_PYTIN)

HSP 1 Score: 157 bits (398), Expect = 2.710e-40
Identity = 91/216 (42.13%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRILFAATVTTPSA 648
            WI + FH NTN K+ RA  G R DS  +TF AK++PP LK+RVG+FSTRSPHRPNPIG++L +++ V+ A+R++ LSG+DLVDGTPVLDIKPYVP YDC                D  VA W+ + +     ++ E      ++ + +           + ++ D  G   AI + L VDVRS    R   SA    L+ D +R+ +A T TTP A
Sbjct:   97 WIVFVFHKNTNGKNARAHEGLRSDSYRYTFKAKIAPPKLKQRVGIFSTRSPHRPNPIGITLARIERVDHAKRTVYLSGLDLVDGTPVLDIKPYVPAYDCVP--------------DALVASWVSSDLSPTVALQNE------VRHLASSSS--------RLYQDDPEGLVSAIEQVLQVDVRSRDLARRRDSASQNHLVLDVVRVTYAITSTTPIA 284          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A8K1CSJ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSJ8_PYTOL)

HSP 1 Score: 157 bits (397), Expect = 1.220e-39
Identity = 88/189 (46.56%), Postives = 110/189 (58.20%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCD-VEW-EPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKT 561
            WI + FH NTN K+ RA  G R DS  +TF AK++PP LK RVG+FSTRSPHRPNPIG++L K++ V+ A R++ LSG+DLVDGTPVLDIKPYVP YD                 D   A W+   +    + V W  PD  A L E C +          + +RGD    + AI E L VDVRS  +T
Sbjct:  141 WIVFVFHKNTNGKNARAHQGLRSDSHRYTFKAKIAPPKLKERVGIFSTRSPHRPNPIGITLAKIESVDCATRTVHLSGLDLVDGTPVLDIKPYVPAYDA--------------VLDARAASWVSLDLSPTINQVRWTSPDTRAVL-ECCAETS--------RLYRGDAAALQAAIEEVLQVDVRSKEQT 306          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A024TC49_9STRA (TsaA-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TC49_9STRA)

HSP 1 Score: 154 bits (390), Expect = 8.350e-39
Identity = 88/205 (42.93%), Postives = 123/205 (60.00%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRI 615
            WI + FH NTN K+ RA  G       HTF AK+SPP LK+R+GVF+TR+PHRPNPIG++L K++ V+ A RSI +S +DLVDGTPVLD+KPYVP Y           DS+ G     V DWI+ASV+ +  V ++ D E  +++ C             F+ G+      AI + L+VDVRS  +T ++ +     LLFD +++
Sbjct:  126 WITFVFHANTNGKNARAHDGLLSSRTSHTFRAKISPPMLKQRIGVFATRTPHRPNPIGITLAKIEKVDLATRSILVSALDLVDGTPVLDLKPYVPMY-----------DSLPGST---VPDWIQASVQSQSAVRFDSDKEDAMRQCC--------AGHSVFYAGEPDVMLEAIAQVLAVDVRSQVQTAKMHTK-VNKLLFDTVQV 307          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A6G0XJI2_9STRA (TsaA-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI2_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.080e-38
Identity = 84/190 (44.21%), Postives = 113/190 (59.47%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREV 570
            WI + FH NTN K+ RA  G R DS GHTF AK+SPP LK+RVGVF+TR+PHRPNPIG++L K+D V+   R++ +S +DLV+GTPVLDIKPYVP YD     A P               WI  +   +  V +  +  AQ++  C K +         F++ +    R AI E L+VDVRS  +T ++
Sbjct:  129 WITFVFHCNTNGKNARAHEGLRPDSHGHTFKAKISPPMLKKRVGVFATRTPHRPNPIGIALAKIDKVDG--RTLWISAIDLVEGTPVLDIKPYVPKYDSLPQSAVPA--------------WIAETYGTQSSVRFAEECAAQIETCCRKSK---------FYKDEPDNLRSAIEEVLAVDVRSQMQTAKM 293          
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Match: A0A1W0A6M6_9STRA (TsaA-like domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6M6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 9.310e-38
Identity = 90/203 (44.33%), Postives = 125/203 (61.58%), Query Frame = 1
Query:    1 WIFWAFHLNTNMKDTRAQAGGRGDSRG--HTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSLCKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSVAGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQFFRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFD 603
            WI + FH NTN K+ RA  G   +S+   HTF AKVSPP LK+R+GVF+TR+PHRPNPIG++L K+D V+   R + +SG+DLVDGTP+LD+KPYVP YDC  + +D           V VA WI  +V     VEW  ++   L+  C+K        + +F++ D  G   AI + L+VDVRS  +T+++ +    VL FD
Sbjct:  455 WITFVFHCNTNGKNVRAHEGLMNESKSTAHTFRAKVSPPMLKQRMGVFATRTPHRPNPIGITLVKIDQVDKKHRCVYVSGIDLVDGTPILDLKPYVPAYDC--IHSD----------QVQVATWIEKTVGIERSVEWSQESLDGLQ-ACSK--------KSKFYKDDMAGLCTAIEQVLAVDVRSIEQTKKMLNR-VNVLHFD 635          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14069.2821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK9_ECTSI2.230e-9859.47TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
T0RI72_SAPDV1.400e-4343.12TsaA-like domain-containing protein n=1 Tax=Saprol... [more]
A0A067CDS7_SAPPC9.600e-4345.67TsaA-like domain-containing protein n=1 Tax=Saprol... [more]
A0A1V9YMY9_9STRA2.240e-4145.26TsaA-like domain-containing protein n=1 Tax=Achlya... [more]
A0A836CCT4_9STRA2.510e-4040.71TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A2D4C449_PYTIN2.710e-4042.13TsaA-like domain-containing protein n=2 Tax=Pythiu... [more]
A0A8K1CSJ8_PYTOL1.220e-3946.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TC49_9STRA8.350e-3942.93TsaA-like domain-containing protein n=1 Tax=Aphano... [more]
A0A6G0XJI2_9STRA1.080e-3844.21TsaA-like domain-containing protein n=1 Tax=Aphano... [more]
A0A1W0A6M6_9STRA9.310e-3844.33TsaA-like domain-containing protein n=1 Tax=Thraus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14069contigH-elongata_contig14069:5700..8027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score291.6
Seed ortholog evalue4.2e-76
Seed eggNOG ortholog2880.D7FLK9
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTsaA-like domain
Ec32 orthologEc-17_000760.1
Exons4
Model size1674
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14069.2821.1prot_H-elongata_contig14069.2821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14069 6459..7994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.0948064-UTR-H-elongata_contig14069:5699..64581622929836.0948064-UTR-H-elongata_contig14069:5699..6458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14069 5700..6458 -
1691679177.147263-UTR-H-elongata_contig14069:5699..64581691679177.147263-UTR-H-elongata_contig14069:5699..6458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14069 5700..6458 -
1622929836.15547-UTR-H-elongata_contig14069:7994..80271622929836.15547-UTR-H-elongata_contig14069:7994..8027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14069 7995..8027 -
1691679177.2047644-UTR-H-elongata_contig14069:7994..80271691679177.2047644-UTR-H-elongata_contig14069:7994..8027Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14069 7995..8027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.111462-CDS-H-elongata_contig14069:6458..68611622929836.111462-CDS-H-elongata_contig14069:6458..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 6459..6861 -
1691679177.158865-CDS-H-elongata_contig14069:6458..68611691679177.158865-CDS-H-elongata_contig14069:6458..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 6459..6861 -
1622929836.1243365-CDS-H-elongata_contig14069:7124..72761622929836.1243365-CDS-H-elongata_contig14069:7124..7276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7125..7276 -
1691679177.169468-CDS-H-elongata_contig14069:7124..72761691679177.169468-CDS-H-elongata_contig14069:7124..7276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7125..7276 -
1622929836.1344628-CDS-H-elongata_contig14069:7527..76981622929836.1344628-CDS-H-elongata_contig14069:7527..7698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7528..7698 -
1691679177.1787584-CDS-H-elongata_contig14069:7527..76981691679177.1787584-CDS-H-elongata_contig14069:7527..7698Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7528..7698 -
1622929836.1442492-CDS-H-elongata_contig14069:7838..79941622929836.1442492-CDS-H-elongata_contig14069:7838..7994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7839..7994 -
1691679177.1885545-CDS-H-elongata_contig14069:7838..79941691679177.1885545-CDS-H-elongata_contig14069:7838..7994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14069 7839..7994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14069.2821.1

>prot_H-elongata_contig14069.2821.1 ID=prot_H-elongata_contig14069.2821.1|Name=mRNA_H-elongata_contig14069.2821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MKDTRAQAGGRGDSRGHTFPAKVSPPFLKRRVGVFSTRSPHRPNPIGVSL
CKVDGVNAAERSIRLSGVDLVDGTPVLDIKPYVPDYDCPGLRADPGADSV
AGKCDVHVADWIRASVRHRCDVEWEPDAEAQLKEICNKDQWRGEGPRMQF
FRGDYVGARRAITETLSVDVRSSRKTREVASAPFCVLLFDGLRILFAATV
TTPSARFPTALSVRGSPLFSSPIGADADATTPPTIDDFPRIANSVSFSSP
KEFGEDSLAGGSPRNGHVSPESLIQPPSVVESVRVVLVEQRGK*
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mRNA from alignment at H-elongata_contig14069:5700..8027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14069.2821.1 ID=mRNA_H-elongata_contig14069.2821.1|Name=mRNA_H-elongata_contig14069.2821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2328bp|location=Sequence derived from alignment at H-elongata_contig14069:5700..8027- (Himanthalia elongata Himel1 dioecious)
TGGATATTCTGGGCGTTTCACCTCAATACGAACATGAAAGACACGAGAGC GCAAGCAGGCGGACGCGGGGACAGCCGTGGTCACACCTTTCCTGCGAAGG TCTCGCCACCCTTCTTAAAGCGTCGGGTGGGGGTATTCTCGACTCGTTCC CCGCATCGGCCCAATCCTATCGGGGTCAGTCTTTGCAAGGTGATGTGATG GTTTGCCCTGTGCATGCTCGTCAAACCCACTCAGAATGGGCGCCCTTGCT AAATCGATGGGCCACAATCGACGATTGATAAACCAATTAGAGAGGCCACG CCGTCTCCGGCCGAACTCTGCGTTTCAAGGTGGACGGTGTGAACGCCGCG GAACGGTCCATTAGACTGTCCGGAGTGGACCTCGTGGATGGTACACCAGT CCTCGACATCAAACCCTACGTGCCCGACTACGATTGTCCTGGACTGAGAG CTGACCCTGGCGCAGATTCGGTGGCAGGGAAGTGCGATGTGCACGTCGCG GTGAGTCTGAATTATTTGAAAATGACAGACTTCTGGCAAAGGGATCGGGG GGAAAGGGGGAGATAGTAACACAGCTCGATTAGCCTCCTCACCATTGAAT ACTAAACCGCAAAAAGGAGCAAAAAACGCCGTCATCGTAGCGGAACACTT GGACCCAACAATATTTTGTGGTCGCATAGGTCAACGACCTTGACCGAGTG CGCTCGCTGAGCCCGATTGCTTCCACGTCTTCGACGATTGTGACGCCGAA GGACTGGATTAGGGCGTCAGTGAGACATCGATGCGACGTCGAGTGGGAAC CAGATGCGGAAGCACAGCTAAAAGAAATTTGTAACAAAGACCAATGGCGT GGTGAGGGACCGCGCATGCAATTTTTCCGCGGAGACTACGTGGGTGCCAG GCGGTGAGTTCACCACGCCGCAAAATATGGAAATAATGTTGACAAATGCG ATTGCAATTTGTTTTCTGCCACCCACGTTTTGGCTCGCATTTTAGCTTTC TGGGCGTTTTTATGCGTATGGTTTCCACGATTAGATCTAGTCCGAAGTTT GTCGTGCCTTGCGTAGTACGGTGTTTCCTCTGCGTAATTAAAGTATGAAC CCTTCGCTTGCTGCGCCCCCTTTTACGCCTTTTGCCTTAATCTCATCATG TACCGACACGCCGCAGGGCGATCACCGAGACCTTGTCCGTCGATGTTCGA AGCTCACGCAAGACGCGAGAGGTGGCGTCTGCCCCTTTTTGCGTTTTATT GTTTGATGGCCTGCGGATACTATTTGCCGCGACGGTCACCACTCCGTCAG CTCGATTTCCAACGGCCTTATCCGTCCGAGGGTCGCCACTGTTCTCATCA CCTATCGGCGCTGATGCCGACGCCACGACCCCCCCCACAATTGATGACTT CCCGAGGATCGCCAATAGCGTTTCCTTTTCCTCGCCGAAAGAATTCGGCG AGGATTCTCTGGCAGGAGGGTCTCCTCGGAACGGACACGTGAGCCCAGAA AGTCTCATACAACCGCCATCAGTTGTAGAAAGTGTCCGAGTTGTGTTGGT GGAACAGCGGGGGAAATAGCGCTATTCGGCTCTTTTTTTCTTTGGATCAC GATTTTGATGACGTCATGCATGGCGTAGAGCGCGCGCATTACGGCGAGTA TTCCACCTCTGATGATGCACTGCAAGCATCTTGAGGTCCAGCGCGCACGT CAAGATGCGTTTGCGTGCTGAGGGTGATGTAGGAGCACCTTTGTGCAGCT CTTCACTCCCGAGTTGTGCGTGTTCGGTCTGTAACGAATCGGCAGTGGTA CTGTAGGAGGACCCCTCGCGTTGAGTATAGTCAGTCGGCAATGCTCAGTC GTCAGTCCACTCAGGTAAATTTGTGTTGCTTTTTTCAATATCAAGTCGCC ACGCTCCTCTTGCGTCTGCGAGCGATGACGCAAGCAAGATGATAACCTTG TCGAATAGATTGCTTGCGCGCGGAACTTCTCTACCGTAACGACATCTGAG GACACATTCTTGGGGAAAATATTCCCCCCGACGTTTCTTCTCCTTTGGAG AATGAAGAAACTTGAATAGGACGATATTGAAAAAAACTCGCTTACAACTT GACGGAAATGTCTCGTTTTCCATGTTTGACGTCTTAACAAAGACATGGAG GAGGGTGGAATCACAGAGGAAGAAACTCGTAAGGTAGTTTACCCATCGTC AGTAGACGTCTCAGTCGCGACGCTTGGCTCTTGCGCGACTAGCTTAGCCT TGCCTCAAACAACCGTTTCCTTCCAGCTAGCATATTTTCAAACGAAACCA GCTGTCAAATGCCGCCTAGTTTGTTATG
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Coding sequence (CDS) from alignment at H-elongata_contig14069:5700..8027-

>mRNA_H-elongata_contig14069.2821.1 ID=mRNA_H-elongata_contig14069.2821.1|Name=mRNA_H-elongata_contig14069.2821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig14069:5700..8027- (Himanthalia elongata Himel1 dioecious)
ATGAAAGACACGAGAGCGCAAGCAGGCGGACGCGGGGACAGCCGTGGTCA
CACCTTTCCTGCGAAGGTCTCGCCACCCTTCTTAAAGCGTCGGGTGGGGG
TATTCTCGACTCGTTCCCCGCATCGGCCCAATCCTATCGGGGTCAGTCTT
TGCAAGATGAAAGACACGAGAGCGCAAGCAGGCGGACGCGGGGACAGCCG
TGGTCACACCTTTCCTGCGAAGGTCTCGCCACCCTTCTTAAAGCGTCGGG
TGGGGGTATTCTCGACTCGTTCCCCGCATCGGCCCAATCCTATCGGGGTC
AGTCTTTGCAAGGTGGACGGTGTGAACGCCGCGGAACGGTCCATTAGACT
GTCCGGAGTGGACCTCGTGGATGGTACACCAGTCCTCGACATCAAACCCT
ACGTGCCCGACTACGATTGTCCTGGACTGAGAGCTGACCCTGGCGCAGAT
TCGGTGGCAGGGAAGTGCGATGTGCACGTCGCGGTGGACGGTGTGAACGC
CGCGGAACGGTCCATTAGACTGTCCGGAGTGGACCTCGTGGATGGTACAC
CAGTCCTCGACATCAAACCCTACGTGCCCGACTACGATTGTCCTGGACTG
AGAGCTGACCCTGGCGCAGATTCGGTGGCAGGGAAGTGCGATGTGCACGT
CGCGGACTGGATTAGGGCGTCAGTGAGACATCGATGCGACGTCGAGTGGG
AACCAGATGCGGAAGCACAGCTAAAAGAAATTTGTAACAAAGACCAATGG
CGTGGTGAGGGACCGCGCATGCAATTTTTCCGCGGAGACTACGTGGGTGC
CAGGCGGACTGGATTAGGGCGTCAGTGAGACATCGATGCGACGTCGAGTG
GGAACCAGATGCGGAAGCACAGCTAAAAGAAATTTGTAACAAAGACCAAT
GGCGTGGTGAGGGACCGCGCATGCAATTTTTCCGCGGAGACTACGTGGGT
GCCAGGCGGGCGATCACCGAGACCTTGTCCGTCGATGTTCGAAGCTCACG
CAAGACGCGAGAGGTGGCGTCTGCCCCTTTTTGCGTTTTATTGTTTGATG
GCCTGCGGATACTATTTGCCGCGACGGTCACCACTCCGTCAGCTCGATTT
CCAACGGCCTTATCCGTCCGAGGGTCGCCACTGTTCTCATCACCTATCGG
CGCTGATGCCGACGCCACGACCCCCCCCACAATTGATGACTTCCCGAGGA
TCGCCAATAGCGTTTCCTTTTCCTCGCCGAAAGAATTCGGCGAGGATTCT
CTGGCAGGAGGGTCTCCTCGGAACGGACACGTGAGCCCAGAAAGTCTCAT
ACAACCGCCATCAGTTGTAGAAAGTGTCCGAGTTGTGTTGGTGGAACAGC
GGGGGAAATAGGGCGATCACCGAGACCTTGTCCGTCGATGTTCGAAGCTC
ACGCAAGACGCGAGAGGTGGCGTCTGCCCCTTTTTGCGTTTTATTGTTTG
ATGGCCTGCGGATACTATTTGCCGCGACGGTCACCACTCCGTCAGCTCGA
TTTCCAACGGCCTTATCCGTCCGAGGGTCGCCACTGTTCTCATCACCTAT
CGGCGCTGATGCCGACGCCACGACCCCCCCCACAATTGATGACTTCCCGA
GGATCGCCAATAGCGTTTCCTTTTCCTCGCCGAAAGAATTCGGCGAGGAT
TCTCTGGCAGGAGGGTCTCCTCGGAACGGACACGTGAGCCCAGAAAGTCT
CATACAACCGCCATCAGTTGTAGAAAGTGTCCGAGTTGTGTTGGTGGAAC
AGCGGGGGAAATAG
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