mRNA_H-elongata_contig14066.2820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14066.2820.1
Unique NamemRNA_H-elongata_contig14066.2820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI000CDF6657 (zinc finger protein 862-like n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CDF6657)

HSP 1 Score: 58.5 bits (140), Expect = 3.170e-9
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRGGLR--FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            K Y+  W T+ +++   R  ++N+ +L ++ +  P ++ +CERGFSAQNRIK   R+CL  S  E LMRISL
Sbjct:   22 KSYSGLWETM-LTKDPYRHDYKNILELVQLMLALPISAAQCERGFSAQNRIKNLTRSCLGASTTEDLMRISL 92          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 58.9 bits (141), Expect = 4.180e-9
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            F N+ KL +I    P +S+ECERGFS QN+IK KDRN L  + L+ LMR+SL
Sbjct:   86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB)

HSP 1 Score: 58.9 bits (141), Expect = 9.080e-9
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRGGLR-FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            K Y+  W  +       + ++N+ +L +I +  P ++ +CERGFSAQNRIK   R+CL VS  E LMRISL
Sbjct:  112 KTYSGLWEMLMTKDPYKQDYKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX)

HSP 1 Score: 59.3 bits (142), Expect = 1.360e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRGGL--RFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
            K Y+  W  V +S+      F+N++ LA+I +  P ++ +CERGFSAQNRIK K RN L VS +E L+RIS
Sbjct:  536 KSYSGLWE-VMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D)

HSP 1 Score: 55.5 bits (132), Expect = 4.620e-8
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRGGLR--FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            K Y+  W  + +++   +  +RN+ +L  I +  P ++ +CERGFSAQNRIK   R+ L VS  E LMRISL
Sbjct:   18 KSYSDLWELL-LTKDPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 55.8 bits (133), Expect = 2.260e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            F N+ KL +I    P +S+ECERGFS QN+IK KDRN L  + L+ LM ISL
Sbjct:  544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            F N+ KL +I    P +S+ECERGFS QN+IK KDRN L  + L+ LM ISL
Sbjct:  614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007B8D399 (uncharacterized protein LOC107662498 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8D399)

HSP 1 Score: 53.5 bits (127), Expect = 9.470e-7
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRG-GLRFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
            K Y+  W+T+       + ++N+  L ++ +  P ++ +CERGFSAQNRIK   R+ L VS  E L++IS
Sbjct:  115 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 184          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007B919CC (uncharacterized protein LOC107662499 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B919CC)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    4 KLYAQFWRTVQISRG-GLRFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
            K Y+  W+T+       + ++N+  L ++ +  P ++ +CERGFSAQNRIK   R+ L VS  E L++IS
Sbjct:  222 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 291          
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A8H3QWN6_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QWN6_9GLOM)

HSP 1 Score: 52.4 bits (124), Expect = 2.180e-6
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
            F N+ KL +I    P +S+ECE GFS QN+IK KDRN L  + L+ LM + L
Sbjct:  128 FLNIIKLIQIVYCIPFSSVECEHGFSRQNKIKTKDRNSLATNMLDLLMHVFL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
UPI000CDF66573.170e-943.06zinc finger protein 862-like n=1 Tax=Salvelinus al... [more]
A0A8H3LT90_9GLOM4.180e-955.77Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
UPI0007AD13DB9.080e-943.66zinc finger protein 862-like n=1 Tax=Sinocyclochei... [more]
A0A3B1J4P0_ASTMX1.360e-847.89TTF-type domain-containing protein n=1 Tax=Astyana... [more]
UPI0011C0D78D4.620e-843.06zinc finger protein 862-like n=1 Tax=Sparus aurata... [more]
A0A015J8B3_RHIIW2.260e-755.77Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3532.290e-755.77Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI0007B8D3999.470e-738.57uncharacterized protein LOC107662498 n=1 Tax=Sinoc... [more]
UPI0007B919CC1.330e-638.57uncharacterized protein LOC107662499 n=1 Tax=Sinoc... [more]
A0A8H3QWN6_9GLOM2.180e-650.00Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14066contigH-elongata_contig14066:2462..2674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.046464-CDS-H-elongata_contig14066:2461..26741622929836.046464-CDS-H-elongata_contig14066:2461..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14066 2462..2674 +
1691679177.1315484-CDS-H-elongata_contig14066:2461..26741691679177.1315484-CDS-H-elongata_contig14066:2461..2674Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14066 2462..2674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14066.2820.1prot_H-elongata_contig14066.2820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14066 2462..2674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14066.2820.1

>prot_H-elongata_contig14066.2820.1 ID=prot_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MKLYAQFWRTVQISRGGLRFRNVYKLAKIYITQPHASIECERGFSAQNRI
KRKDRNCLKVSHLEHLMRISL
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mRNA from alignment at H-elongata_contig14066:2462..2674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14066.2820.1 ID=mRNA_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig14066:2462..2674+ (Himanthalia elongata Himel1 dioecious)
ATGAAATTGTACGCACAGTTTTGGAGGACAGTCCAGATTTCGCGAGGAGG ATTGAGGTTCCGCAACGTGTACAAGCTCGCAAAGATTTACATCACGCAGC CGCACGCGTCAATCGAGTGCGAGCGCGGGTTCTCCGCCCAGAACAGGATC AAACGCAAGGACCGAAACTGTCTGAAGGTCTCGCACCTGGAGCATTTGAT GCGGATCTCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig14066:2462..2674+

>mRNA_H-elongata_contig14066.2820.1 ID=mRNA_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig14066:2462..2674+ (Himanthalia elongata Himel1 dioecious)
ATGAAATTGTACGCACAGTTTTGGAGGACAGTCCAGATTTCGCGAGGAGG
ATTGAGGTTCCGCAACGTGTACAAGCTCGCAAAGATTTACATCACGCAGC
CGCACGCGTCAATCGAGTGCGAGCGCGGGTTCTCCGCCCAGAACAGGATC
AAACGCAAGGACCGAAACTGTCTGAAGGTCTCGCACCTGGAGCATTTGAT
GCGGATCTCTTTGATGAAATTGTACGCACAGTTTTGGAGGACAGTCCAGA
TTTCGCGAGGAGGATTGAGGTTCCGCAACGTGTACAAGCTCGCAAAGATT
TACATCACGCAGCCGCACGCGTCAATCGAGTGCGAGCGCGGGTTCTCCGC
CCAGAACAGGATCAAACGCAAGGACCGAAACTGTCTGAAGGTCTCGCACC
TGGAGCATTTGATGCGGATCTCTTTG
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