mRNA_H-elongata_contig14066.2820.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI000CDF6657 (zinc finger protein 862-like n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CDF6657) HSP 1 Score: 58.5 bits (140), Expect = 3.170e-9 Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRGGLR--FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
K Y+ W T+ +++ R ++N+ +L ++ + P ++ +CERGFSAQNRIK R+CL S E LMRISL
Sbjct: 22 KSYSGLWETM-LTKDPYRHDYKNILELVQLMLALPISAAQCERGFSAQNRIKNLTRSCLGASTTEDLMRISL 92
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM) HSP 1 Score: 58.9 bits (141), Expect = 4.180e-9 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
F N+ KL +I P +S+ECERGFS QN+IK KDRN L + L+ LMR+SL
Sbjct: 86 FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007AD13DB (zinc finger protein 862-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007AD13DB) HSP 1 Score: 58.9 bits (141), Expect = 9.080e-9 Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRGGLR-FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
K Y+ W + + ++N+ +L +I + P ++ +CERGFSAQNRIK R+CL VS E LMRISL
Sbjct: 112 KTYSGLWEMLMTKDPYKQDYKNILELVQIMLVLPISAAQCERGFSAQNRIKNSTRSCLGVSTTEDLMRISL 182
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A3B1J4P0_ASTMX (TTF-type domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J4P0_ASTMX) HSP 1 Score: 59.3 bits (142), Expect = 1.360e-8 Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRGGL--RFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
K Y+ W V +S+ F+N++ LA+I + P ++ +CERGFSAQNRIK K RN L VS +E L+RIS
Sbjct: 536 KSYSGLWE-VMLSKEPYCSDFQNIFHLAEIMLVLPISAAQCERGFSAQNRIKSKVRNSLNVSTVEDLVRIS 605
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0011C0D78D (zinc finger protein 862-like n=1 Tax=Sparus aurata TaxID=8175 RepID=UPI0011C0D78D) HSP 1 Score: 55.5 bits (132), Expect = 4.620e-8 Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRGGLR--FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
K Y+ W + +++ + +RN+ +L I + P ++ +CERGFSAQNRIK R+ L VS E LMRISL
Sbjct: 18 KSYSDLWELL-LTKDPYKTDYRNILELVMIMLVLPISAAQCERGFSAQNRIKTSTRSSLAVSTTEDLMRISL 88
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW) HSP 1 Score: 55.8 bits (133), Expect = 2.260e-7 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
F N+ KL +I P +S+ECERGFS QN+IK KDRN L + L+ LM ISL
Sbjct: 544 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353) HSP 1 Score: 55.8 bits (133), Expect = 2.290e-7 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
F N+ KL +I P +S+ECERGFS QN+IK KDRN L + L+ LM ISL
Sbjct: 614 FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007B8D399 (uncharacterized protein LOC107662498 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8D399) HSP 1 Score: 53.5 bits (127), Expect = 9.470e-7 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRG-GLRFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
K Y+ W+T+ + ++N+ L ++ + P ++ +CERGFSAQNRIK R+ L VS E L++IS
Sbjct: 115 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 184
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: UPI0007B919CC (uncharacterized protein LOC107662499 n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B919CC) HSP 1 Score: 53.5 bits (127), Expect = 1.330e-6 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 4 KLYAQFWRTVQISRG-GLRFRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRIS 210
K Y+ W+T+ + ++N+ L ++ + P ++ +CERGFSAQNRIK R+ L VS E L++IS
Sbjct: 222 KSYSSLWQTLSTKEPYNVDYKNILHLVEMMLILPISAAQCERGFSAQNRIKNSTRSSLHVSTTEDLIQIS 291
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Match: A0A8H3QWN6_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QWN6_9GLOM) HSP 1 Score: 52.4 bits (124), Expect = 2.180e-6 Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 58 FRNVYKLAKIYITQPHASIECERGFSAQNRIKRKDRNCLKVSHLEHLMRISL 213
F N+ KL +I P +S+ECE GFS QN+IK KDRN L + L+ LM + L
Sbjct: 128 FLNIIKLIQIVYCIPFSSVECEHGFSRQNKIKTKDRNSLATNMLDLLMHVFL 179 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14066.2820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14066.2820.1 >prot_H-elongata_contig14066.2820.1 ID=prot_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp MKLYAQFWRTVQISRGGLRFRNVYKLAKIYITQPHASIECERGFSAQNRIback to top mRNA from alignment at H-elongata_contig14066:2462..2674+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14066.2820.1 ID=mRNA_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig14066:2462..2674+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14066:2462..2674+ >mRNA_H-elongata_contig14066.2820.1 ID=mRNA_H-elongata_contig14066.2820.1|Name=mRNA_H-elongata_contig14066.2820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig14066:2462..2674+ (Himanthalia elongata Himel1 dioecious)back to top |