mRNA_H-elongata_contig14065.2818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14065.2818.1
Unique NamemRNA_H-elongata_contig14065.2818.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.050e-47
Identity = 105/221 (47.51%), Postives = 128/221 (57.92%), Query Frame = 1 
Query:    1 ALRLKPNYPKMLLRKARLHSRLCRWEEAVKDYETYVNNIDILHETWKEAATELDECRTNLRKVRDHERKKXXXXXXXXXXXXXXXSRQTSSKDYSY----------YPSGSDGEYDD---------PFSFFDRTSRGGRRAXXXXXXXSGHSAFDSV-----TPSSGHYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            ALRLKPNYPK+LLRKARLH RL +W+ A+KDYETY N++ +LH TW+EAA+ELD+CR + R+  D ER++               +R     DY Y                G +DD         PF FF   S   RR         G S +DS       P+SGHY TLG+KS AT  EVKKAYRKLALQHHPDKN+GN  +A  FK+VTAAYE  S+
Sbjct:  206 ALRLKPNYPKVLLRKARLHKRLSQWDLAIKDYETYRNSVGVLHSTWEEAASELDQCRLSQRRANDEERRREAE------------ARAYERGDYFYGSXXXXXXXXXXXXXHGLFDDXXXXXDDHDPFKFFSGGSSWSRRGRGT----GGRSNYDSPPPPGPVPTSGHYTTLGIKSTATTAEVKKAYRKLALQHHPDKNQGNEASANIFKDVTAAYEVLSD 410
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A662XH08_9STRA (J domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XH08_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.120e-13
Identity = 79/200 (39.50%), Postives = 111/200 (55.50%), Query Frame = 1 
Query:    1 ALRLKPNYPKMLLRKARLHSRLCRWEEAVKDYETYVNNI--DILHETWKEAATELDECRTNLRKVRDHERKKXXXXXXXXXXXXXXXSRQTSSKDYSYYPSGSDGEYDDPFSFFDRTSRGGRRAXXXXXXXSGHSAF-DSVTPSSGHYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            AL+ K  Y + LLR+AR +  LC+++EAVKD++ Y+     D      ++   E +E +  + K R+  RK XXXXXXXXXXXXXXX++              D  +DD   F++   RG  R        +G S+F +  T    HY  LGL+  AT  ++KKAYRKLAL +HPDK+   A   + FKE+TAAY   S+
Sbjct:  427 ALQRKAQYSRALLRRARCYVALCKFQEAVKDFDRYLREHPGDSSSGQAEDIRRERNEAKAAVAKTREEARKXXXXXXXXXXXXXXXXAQHW------------DQAWDDS-KFYENFRRGSSR--FKAAGANGRSSFMEKKTQRRTHYDVLGLEKVATCDQIKKAYRKLALVYHPDKS-NTASHVDLFKEMTAAYNVLSD 610
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: F0Y0R6_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R6_AURAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.400e-12
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  430 HYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            HY TLG+K  A   E+KKAYR LA Q HPDKN GNA AAE+F E+ +AYE  S+
Sbjct:    2 HYRTLGVKPRAKEAEIKKAYRSLAKQWHPDKNPGNAQAAEKFSEIASAYEVLSD 55
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: UPI0013968129 (DnaJ domain-containing protein n=1 Tax=Treponema endosymbiont of Eucomonympha sp. TaxID=1580831 RepID=UPI0013968129)

HSP 1 Score: 68.2 bits (165), Expect = 1.690e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  430 HYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            +Y  LG++  AT  E+KK YRKLA+QHHPDKN GN DA  +FKE T AYE  S+
Sbjct:    6 YYEVLGVQKNATKDEIKKGYRKLAIQHHPDKNPGNKDAETKFKEATEAYEVLSD 59
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A8J2JGB2_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JGB2_9HEXA)

HSP 1 Score: 69.3 bits (168), Expect = 3.410e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  415 TPSSGHYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAY 576
            T    HY TLGL+  AT  E+KK+YR+LALQ HPDKN GN DA E+FKE+  A+
Sbjct:    8 TAGETHYRTLGLEKTATPEEIKKSYRRLALQFHPDKNLGNPDAGEKFKEINQAH 61
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A800M4H7_9BACT (J domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4H7_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 4.170e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  412 VTPSSGHYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYE 579
            + PS  HYATLG+   ATA E+KKAYR LA Q+HPD+N G+  A ERFKEV +AY+
Sbjct:    1 MPPSPDHYATLGVDENATAKEIKKAYRTLAQQYHPDRNAGDTAAEERFKEVQSAYD 56
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A2M3Z8S2_9DIPT (Putative molecular chaperone dnaj superfamily (Fragment) n=2 Tax=Anopheles braziliensis TaxID=58242 RepID=A0A2M3Z8S2_9DIPT)

HSP 1 Score: 67.4 bits (163), Expect = 5.720e-11
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  433 YATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAY 576
            Y TLGL+  ATA E+KK YRKLAL++HPDKN  N DAAE+FKEV  A+
Sbjct:   11 YQTLGLQKTATADEIKKTYRKLALKYHPDKNPNNPDAAEKFKEVNRAH 58
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A538CDW6_9ACTN (Chaperone protein DnaJ n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CDW6_9ACTN)

HSP 1 Score: 70.9 bits (172), Expect = 5.770e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:  430 HYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYE 579
            +Y  LG+   A+A E+KK YRKLA QHHPD+NRGN DA +RFKE++AAY+
Sbjct:   16 YYQVLGVPKNASAAEIKKTYRKLAQQHHPDRNRGNKDAEDRFKEISAAYD 65
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: A0A662CIY5_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Aquificae bacterium TaxID=2202151 RepID=A0A662CIY5_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 7.280e-11
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  430 HYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            +YA LG+   AT  E+K+AYR+LALQ+HPDKN GN +A E+FKE+T AY+  S+
Sbjct:    5 YYAILGISRNATQEEIKRAYRRLALQYHPDKNPGNREAEEKFKEITEAYQVLSD 58
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BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Match: DNAJ_CHLPD (Chaperone protein DnaJ n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) TaxID=290317 RepID=DNAJ_CHLPD)

HSP 1 Score: 70.5 bits (171), Expect = 7.990e-11
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  430 HYATLGLKSCATAVEVKKAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN 591
            +Y  LGL   AT  E+KKAYRKLA+Q+HPDKN  N DA E FKEV  AYEA SN
Sbjct:    5 YYEVLGLSRSATKDEIKKAYRKLAMQYHPDKNPDNKDAEEHFKEVNEAYEALSN 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14065.2818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI1.050e-4747.51Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A662XH08_9STRA6.120e-1339.50J domain-containing protein n=1 Tax=Nothophytophth... [more]
F0Y0R6_AURAN3.400e-1261.11J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
UPI00139681291.690e-1159.26DnaJ domain-containing protein n=1 Tax=Treponema e... [more]
A0A8J2JGB2_9HEXA3.410e-1159.26Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A800M4H7_9BACT4.170e-1160.71J domain-containing protein n=1 Tax=Bacteroidetes ... [more]
A0A2M3Z8S2_9DIPT5.720e-1166.67Putative molecular chaperone dnaj superfamily (Fra... [more]
A0A538CDW6_9ACTN5.770e-1162.00Chaperone protein DnaJ n=1 Tax=Actinomycetia bacte... [more]
A0A662CIY5_9BACT7.280e-1157.41Molecular chaperone DnaJ (Fragment) n=1 Tax=Aquifi... [more]
DNAJ_CHLPD7.990e-1164.81Chaperone protein DnaJ n=1 Tax=Chlorobium phaeobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14065contigH-elongata_contig14065:3591..5336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue7.8e-36
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size594
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14065.2818.1prot_H-elongata_contig14065.2818.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14065 3591..5306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.8136487-CDS-H-elongata_contig14065:3590..37101622929835.8136487-CDS-H-elongata_contig14065:3590..3710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 3591..3710 -
1691679177.0146947-CDS-H-elongata_contig14065:3590..37101691679177.0146947-CDS-H-elongata_contig14065:3590..3710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 3591..3710 -
1622929835.8287716-CDS-H-elongata_contig14065:4208..43421622929835.8287716-CDS-H-elongata_contig14065:4208..4342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 4209..4342 -
1691679177.0269008-CDS-H-elongata_contig14065:4208..43421691679177.0269008-CDS-H-elongata_contig14065:4208..4342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 4209..4342 -
1622929835.849705-CDS-H-elongata_contig14065:4780..50301622929835.849705-CDS-H-elongata_contig14065:4780..5030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 4781..5030 -
1691679177.0356615-CDS-H-elongata_contig14065:4780..50301691679177.0356615-CDS-H-elongata_contig14065:4780..5030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 4781..5030 -
1622929835.8643785-CDS-H-elongata_contig14065:5246..53061622929835.8643785-CDS-H-elongata_contig14065:5246..5306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 5247..5306 -
1691679177.0437832-CDS-H-elongata_contig14065:5246..53061691679177.0437832-CDS-H-elongata_contig14065:5246..5306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 5247..5306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.8907988-UTR-H-elongata_contig14065:5306..53361622929835.8907988-UTR-H-elongata_contig14065:5306..5336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14065 5307..5336 -
1691679177.054609-UTR-H-elongata_contig14065:5306..53361691679177.054609-UTR-H-elongata_contig14065:5306..5336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14065 5307..5336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14065.2818.1

>prot_H-elongata_contig14065.2818.1 ID=prot_H-elongata_contig14065.2818.1|Name=mRNA_H-elongata_contig14065.2818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MLLRKARLHSRLCRWEEAVKDYETYVNNIDILHETWKEAATELDECRTNL
RKVRDHERKKEREADAKSRSRVHNHSRQTSSKDYSYYPSGSDGEYDDPFS
FFDRTSRGGRRAGGRCGGRSGHSAFDSVTPSSGHYATLGLKSCATAVEVK
KAYRKLALQHHPDKNRGNADAAERFKEVTAAYEASSN*
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mRNA from alignment at H-elongata_contig14065:3591..5336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14065.2818.1 ID=mRNA_H-elongata_contig14065.2818.1|Name=mRNA_H-elongata_contig14065.2818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1746bp|location=Sequence derived from alignment at H-elongata_contig14065:3591..5336- (Himanthalia elongata Himel1 dioecious)
GCTTTGCGACTGAAGCCGAACTACCCGAAGATGCTCCTTAGAAAGGCCCG
GCTGCACAGTCGCCTCTGCCGCTGGGAGGAAGCCGTGAAGGTAACCAAAT
ATTTCGCCGATAACAACATCTAGGGCAATATTTAGGAATTATTGGCTCCT
GTTTGACGTACGTGTGTATATGAGACTGAGAGGGCTCTATCCCCCTAACG
CTCCACAGCAGCCGACGGTGACAATATCGTTGAAATGAGTGACCGCTCCA
CCGAAAGAAAGGTCCAACGACAACATTTTCCCCTGATAACTCACGCGTGT
CCTCAGGACTACGAAACTTACGTGAACAACATCGATATATTGCATGAGAC
TTGGAAGGAGGCAGCCACCGAGTTGGACGAGTGCCGCACAAACCTCCGCA
AAGTGCGCGACCATGAGCGTAAGAAGGAAAGAGAGGCGGACGCGAAGTCG
CGCTCTCGCGTACACAACCATTCGCGGCAGACCAGCTCGAAAGACTACTC
GTACTACCCCAGCGGCTCAGATGGTGAATACGACGACCCGTTCAGCTTCT
TCGACAGTAAGTCTTTCCGGTTTGACGGGAAGGGAGTTTTGATCGGTTTG
GGAGGTAATTTGTATCAGAAAGGATATGAATGTCAAGGAAGATCCATTCG
GGGCAAGGACATCTTCTTTGAGGGCTGTTGTGCGAAAGAAAGAAAAAAAT
CGTCGCCCTCGTCTCTAATCGTCCCACAAAAAAAAACAAACTTTTATTAT
CTTCGCGTTCCTCTCACAGACACACTTAAGCGCGTTTAAAAAAAACGGTA
ATGACGGCACACTCGGGCAAGAGCTCGTTTCTCTTGCGACAAGCTATCTA
GAAAAAGGTTTGAAGAGTGTACATTGTACGATCCTGTTATCCGTATTGCC
CCCGCTGCCTTTGAATCGATTATCGCACCCTCTACCTATACCGTATCGTA
CCGTACTTCGTTTTACCGCACCCTCTTCCACTGTCGTCGTGCAGGAACTT
CCAGGGGTGGCAGGAGAGCTGGAGGGCGTTGCGGCGGCAGGTCCGGGCAC
TCAGCGTTCGATTCAGTGACGCCGTCTTCGGGTCACTACGCTACGCTAGG
CCTCAAGTCGTGCGCTACGGCGGTGGAGGTGAGCACTAGTGTGATGGTTT
AACGCTTATGTATGACACCAGAGCTGCTGATATTGAAAAGAAAATGTCGC
GGTGGCGTAGAGCAGGGAAGAAGGCGCTGGTGTGAAACGGTCGCGCGGCG
TTTAACTTTGCAATGCAGTAGTCATATTGGTAGTACCGTACCCCCTTTCC
GCTGCACAACTTAAGCTATTATTTTATTTTAATCGCGAAAACGTTGATCT
GGATTTTATTTTCGAACTTCGTCGAAAACGAAAAATAATTCCTCTCCTAT
ACAGAGGAAAATTATTTCCCCTGTTCAGCTGACCACGAGCAGAAGGCAAT
CAAATCCGGTTGATCTTCTGCTAAATGTGTAATCAACAACAAAAACAAAA
CCTTGCTTCAAATCGTCCCCGTGATGCCCATATGTAACCCGATTCCGCTC
GCTCGGCCAGAATAAGTTGCCATTAATATTAGTAGGTTTTGACTGTCGTT
CGTCTTTTGCACCTGTTGCTTTACAGGTGAAAAAGGCCTACCGTAAGTTA
GCGTTGCAGCACCACCCCGACAAAAACCGGGGCAATGCCGATGCCGCCGA
GCGCTTCAAGGAAGTCACGGCTGCTTACGAGGCGAGCAGTAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14065:3591..5336-

>mRNA_H-elongata_contig14065.2818.1 ID=mRNA_H-elongata_contig14065.2818.1|Name=mRNA_H-elongata_contig14065.2818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig14065:3591..5336- (Himanthalia elongata Himel1 dioecious)
ATGCTCCTTAGAAAGGCCCGGCTGCACAGTCGCCTCTGCCGCTGGGAGGA
AGCCGTGAAGATGCTCCTTAGAAAGGCCCGGCTGCACAGTCGCCTCTGCC
GCTGGGAGGAAGCCGTGAAGGACTACGAAACTTACGTGAACAACATCGAT
ATATTGCATGAGACTTGGAAGGAGGCAGCCACCGAGTTGGACGAGTGCCG
CACAAACCTCCGCAAAGTGCGCGACCATGAGCGTAAGAAGGAAAGAGAGG
CGGACGCGAAGTCGCGCTCTCGCGTACACAACCATTCGCGGCAGACCAGC
TCGAAAGACTACTCGTACTACCCCAGCGGCTCAGATGGTGAATACGACGA
CCCGTTCAGCTTCTTCGACAGACTACGAAACTTACGTGAACAACATCGAT
ATATTGCATGAGACTTGGAAGGAGGCAGCCACCGAGTTGGACGAGTGCCG
CACAAACCTCCGCAAAGTGCGCGACCATGAGCGTAAGAAGGAAAGAGAGG
CGGACGCGAAGTCGCGCTCTCGCGTACACAACCATTCGCGGCAGACCAGC
TCGAAAGACTACTCGTACTACCCCAGCGGCTCAGATGGTGAATACGACGA
CCCGTTCAGCTTCTTCGACAGAACTTCCAGGGGTGGCAGGAGAGCTGGAG
GGCGTTGCGGCGGCAGGTCCGGGCACTCAGCGTTCGATTCAGTGACGCCG
TCTTCGGGTCACTACGCTACGCTAGGCCTCAAGTCGTGCGCTACGGCGGT
GGAGGAACTTCCAGGGGTGGCAGGAGAGCTGGAGGGCGTTGCGGCGGCAG
GTCCGGGCACTCAGCGTTCGATTCAGTGACGCCGTCTTCGGGTCACTACG
CTACGCTAGGCCTCAAGTCGTGCGCTACGGCGGTGGAGGTGAAAAAGGCC
TACCGTAAGTTAGCGTTGCAGCACCACCCCGACAAAAACCGGGGCAATGC
CGATGCCGCCGAGCGCTTCAAGGAAGTCACGGCTGCTTACGAGGCGAGCA
GTAACTAGGTGAAAAAGGCCTACCGTAAGTTAGCGTTGCAGCACCACCCC
GACAAAAACCGGGGCAATGCCGATGCCGCCGAGCGCTTCAAGGAAGTCAC
GGCTGCTTACGAGGCGAGCAGTAACTAG
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