mRNA_H-elongata_contig140611.2816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140611.2816.1
Unique NamemRNA_H-elongata_contig140611.2816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A6H5KWG9_9PHAE (ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG9_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 7.900e-59
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:    1 KVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            +VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDV ++R+MPF+MKGSFFN GQNCIGVERVYVYEKVYDRFV++VTELA  LRQGPVLG + VDCGAMVMPAQLDIVQ
Sbjct:  301 EVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVDMERVMPFVMKGSFFNAGQNCIGVERVYVYEKVYDRFVARVTELASKLRQGPVLGPESVDCGAMVMPAQLDIVQ 407
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.070e-57
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 1 
Query:    1 KVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            +VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDV ++R+MPF+MKGSFFN GQNCIGVERVYVYEKVYDRFV++VTELA  LRQGPVLG + VDCGAMVMPAQLDIVQ
Sbjct:  301 EVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVDIERVMPFVMKGSFFNAGQNCIGVERVYVYEKVYDRFVARVTELASKLRQGPVLGPESVDCGAMVMPAQLDIVQ 407
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A7S2XYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 9.660e-41
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            VGRKVM G    LKPV+LELGGKDP V+C+D  L  ++P +M+G + NCGQNC GVERVYVYE +Y+ F+         LRQGPVLGKDPVDCGAMVMPAQ+D++Q
Sbjct:  316 VGRKVMAGAAPLLKPVILELGGKDPLVLCEDASLRDVLPMVMRGCYQNCGQNCCGVERVYVYEAIYEEFLDMAQREVNQLRQGPVLGKDPVDCGAMVMPAQIDLIQ 421
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A835YP03_9STRA (Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP03_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.490e-38
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            VGRKV       LKPV+LELGGKDP VVCDD  +  ++PF ++G F NCGQNC GVERVY Y  VYD F +        LRQGP LG+D VDCGAMVMPAQLDIVQ
Sbjct:  228 VGRKVAAAAAPLLKPVILELGGKDPMVVCDDARVAAVLPFALRGVFQNCGQNCCGVERVYAYAAVYDAFCAAAARAVAALRQGPALGRDDVDCGAMVMPAQLDIVQ 333
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A4D9CS12_9STRA (Aldedh domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS12_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.060e-37
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVL-GKDPVDCGAMVMPAQLDIVQ 321
            +G+KVMEG    LKPV+LELGGKDP VV +D  ++ L+P  MKG+FFNCGQNC GVER YVYE V+DRFV++V +    LRQGP L G + VDCGA+VMP Q++I+Q
Sbjct:  299 IGKKVMEGAAPHLKPVILELGGKDPMVVMEDADIEGLVPMAMKGAFFNCGQNCCGVERFYVYESVHDRFVAEVVKRVAALRQGPPLSGAERVDCGALVMPRQVEIIQ 405
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A7S1D196_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D196_CYCTE)

HSP 1 Score: 129 bits (325), Expect = 2.580e-35
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1 
Query:    1 KVGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVL---GKD-PVDCGAMVMPAQLDIVQ 321
            +VGR VM+G    LKPV+LELGGKDP V CDDV L+ ++P+ M+G F NCGQNC GVER++VYE ++D F++ V    +GLRQG  L   G D  VDCG+MVM  Q+DI+Q
Sbjct:   68 QVGRLVMKGAAPHLKPVILELGGKDPMVFCDDVKLEAVLPWAMRGCFQNCGQNCCGVERLFVYESIHDEFINAVKPKIEGLRQGIPLATCGADGDVDCGSMVMERQIDIIQ 178
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A6S8YE02_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YE02_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.760e-34
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVL---GKD-PVDCGAMVMPAQLDIVQ 321
            VGR VMEGC K LKPV+LELGGKDP V CDDV +  ++P+ M+G F NCGQNC GVER++VYE +   F+  V    KGLRQG  L   G D  VDCGAMVM AQ+D +Q
Sbjct:  307 VGRLVMEGCSKNLKPVILELGGKDPMVFCDDVKIKDVVPWAMRGCFQNCGQNCCGVERLFVYESIVTEFIDTVLPRVKGLRQGVPLKTCGSDGDVDCGAMVMDAQMDHIQ 416
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A7S1SRN7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SRN7_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 4.130e-34
Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            +G+KVME    TL PVVLELGGKD F+VCDD +L +++P  ++G+F +CGQNC G ER +V+ K+Y +FV ++ E AK +RQGP LG   VDCGAM MP   D +Q
Sbjct:  322 IGKKVMEAAASTLTPVVLELGGKDAFIVCDDANLKQVVPTALRGTFQSCGQNCAGAERFFVHTKIYAKFVERIVEAAKKIRQGPALGSATVDCGAMCMPGLTDKIQ 427
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A4RZT7_OSTLU (Aldehyde dehydrogenase n=3 Tax=Ostreococcus TaxID=70447 RepID=A4RZT7_OSTLU)

HSP 1 Score: 131 bits (329), Expect = 8.540e-34
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    4 VGRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            +GRKVME   KTL PVVLELGGKDPF+VC D  L + +P  ++G+F +CGQNC G ER YV+EK++D+F++KV E A+ LRQG  L    VDCGAM MP Q   VQ
Sbjct:  199 IGRKVMEAAAKTLTPVVLELGGKDPFIVCADADLKQCVPMALRGAFQSCGQNCAGAERFYVHEKIHDKFLAKVLESARKLRQGWALSSS-VDCGAMCMPKQAQYVQ 303
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BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Match: A0A2D5EUV4_9DELT (Aldehyde dehydrogenase n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5EUV4_9DELT)

HSP 1 Score: 131 bits (329), Expect = 1.060e-33
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    7 GRKVMEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIGVERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIVQ 321
            GRKVME   +    VVLELGGKDP +VCDD  LD  +   M G F  CGQ C+GVER+YV++ VYD FV +VT  AK LRQGP LG + VDCGAM MP QLDI++
Sbjct:  228 GRKVMEAASQGPTDVVLELGGKDPMIVCDDADLDHAVEQAMLGVFTACGQMCVGVERIYVFDAVYDEFVRRVTAGAKKLRQGPPLGAETVDCGAMTMPRQLDIIE 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140611.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWG9_9PHAE7.900e-5986.92ALDH protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G3G9_ECTSI2.070e-5786.92Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A7S2XYE7_9STRA9.660e-4163.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YP03_9STRA1.490e-3863.21Aldehyde/histidinol dehydrogenase n=1 Tax=Tribonem... [more]
A0A4D9CS12_9STRA1.060e-3761.68Aldedh domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S1D196_CYCTE2.580e-3556.76Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A6S8YE02_9STRA3.760e-3460.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1SRN7_9CHLO4.130e-3454.72Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A4RZT7_OSTLU8.540e-3458.49Aldehyde dehydrogenase n=3 Tax=Ostreococcus TaxID=... [more]
A0A2D5EUV4_9DELT1.060e-3360.00Aldehyde dehydrogenase n=2 Tax=Myxococcales TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140611contigH-elongata_contig140611:786..1508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140611.2816.1prot_H-elongata_contig140611.2816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140611 786..1490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.684272-CDS-H-elongata_contig140611:785..9111622929835.684272-CDS-H-elongata_contig140611:785..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140611 786..911 -
1691679176.9602888-CDS-H-elongata_contig140611:785..9111691679176.9602888-CDS-H-elongata_contig140611:785..911Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140611 786..911 -
1622929835.6991162-CDS-H-elongata_contig140611:1313..14901622929835.6991162-CDS-H-elongata_contig140611:1313..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140611 1314..1490 -
1691679176.9736032-CDS-H-elongata_contig140611:1313..14901691679176.9736032-CDS-H-elongata_contig140611:1313..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140611 1314..1490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.7145545-UTR-H-elongata_contig140611:1490..15081622929835.7145545-UTR-H-elongata_contig140611:1490..1508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140611 1491..1508 -
1691679176.9827712-UTR-H-elongata_contig140611:1490..15081691679176.9827712-UTR-H-elongata_contig140611:1490..1508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140611 1491..1508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140611.2816.1

>prot_H-elongata_contig140611.2816.1 ID=prot_H-elongata_contig140611.2816.1|Name=mRNA_H-elongata_contig140611.2816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MEGCCKTLKPVVLELGGKDPFVVCDDVHLDRLMPFIMKGSFFNCGQNCIG
VERVYVYEKVYDRFVSKVTELAKGLRQGPVLGKDPVDCGAMVMPAQLDIV
Q
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mRNA from alignment at H-elongata_contig140611:786..1508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140611.2816.1 ID=mRNA_H-elongata_contig140611.2816.1|Name=mRNA_H-elongata_contig140611.2816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=723bp|location=Sequence derived from alignment at H-elongata_contig140611:786..1508- (Himanthalia elongata Himel1 dioecious)
AAGGTGGGGCGCAAGGTGATGGAGGGGTGCTGCAAGACGCTCAAGCCCGT
CGTGCTGGAGCTGGGCGGGAAGGACCCATTCGTGGTGTGCGACGATGTAC
ACCTCGATCGGCTGATGCCGTTCATCATGAAGGGGTCCTTCTTCAACTGC
GGACAAAACTGCATCGGAGTCGAGAGGGTTTACGTCTACGAGAAGGTGGC
GTTTCTTGTGATGGGAGACGGACGTAAATGGTTTTATTTGTAACTGTAAA
CTTTCGGGAGGGGTTTGGCGGATCGTAAAGGAAACAATTTAAGAAAGGAG
GGGAAGGGGGACGTGAGACACGTTCCTTTGTACTCTATTCTAGCTGTAGG
TAGTAGTAGTCCCTCGCTGGTTCGAAGGCGTTTTCTAGATTCATATTAGT
GGAAACGTCGGATGAGAGGAGGCGTTTTTCGACGGCACCAAGCATTTGAC
TTGGAGACAGTAATGTAGCATCCAGCTTCCGTTGAGGAGGGTTTTTGTTA
CGGCGCAGCTGGCTTGAAATACTTTGAGCTCGAAGGTTTCTCTTTGTCGT
CCTTCTCCCCATGTACTCGTACTCCTACTCGTACCCGTACCCGTCAGGTG
TACGACCGATTTGTATCGAAGGTCACGGAGCTTGCGAAAGGCCTCAGGCA
GGGGCCCGTCCTAGGCAAGGACCCCGTGGACTGCGGTGCCATGGTGATGC
CTGCCCAGCTCGACATCGTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig140611:786..1508-

>mRNA_H-elongata_contig140611.2816.1 ID=mRNA_H-elongata_contig140611.2816.1|Name=mRNA_H-elongata_contig140611.2816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig140611:786..1508- (Himanthalia elongata Himel1 dioecious)
ATGGAGGGGTGCTGCAAGACGCTCAAGCCCGTCGTGCTGGAGCTGGGCGG
GAAGGACCCATTCGTGGTGTGCGACGATGTACACCTCGATCGGCTGATGC
CGTTCATCATGAAGGGGTCCTTCTTCAACTGCGGACAAAACTGCATCGGA
GTCGAGAGGGTTTACGTCTACGAGAAGATGGAGGGGTGCTGCAAGACGCT
CAAGCCCGTCGTGCTGGAGCTGGGCGGGAAGGACCCATTCGTGGTGTGCG
ACGATGTACACCTCGATCGGCTGATGCCGTTCATCATGAAGGGGTCCTTC
TTCAACTGCGGACAAAACTGCATCGGAGTCGAGAGGGTTTACGTCTACGA
GAAGGTGTACGACCGATTTGTATCGAAGGTCACGGAGCTTGCGAAAGGCC
TCAGGCAGGGGCCCGTCCTAGGCAAGGACCCCGTGGACTGCGGTGCCATG
GTGATGCCTGCCCAGCTCGACATCGTGCAGGTGTACGACCGATTTGTATC
GAAGGTCACGGAGCTTGCGAAAGGCCTCAGGCAGGGGCCCGTCCTAGGCA
AGGACCCCGTGGACTGCGGTGCCATGGTGATGCCTGCCCAGCTCGACATC
GTGCAG
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