mRNA_H-elongata_contig140516.2814.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 4.460e-38 Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
LHFDYL +G D DGY Y+LV++DD+S+F ++P +CT+ + A+ +L W LG PEV+VS+ A+ FK + + LG RF+VA S WSNG ERM EV+RT + V+ ER R L +W D + AVQ+ALN+AYRE
Sbjct: 41 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRE 189
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 141 bits (355), Expect = 2.670e-36 Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
LHFDYL +G D DGY Y+LV++DD+S+F ++P +CT+ + A+ +L W LG PEV+VS+ A+ FK + + LG RF+VA S WSNG ERM E++RT + V+ ER R + +W D + AVQ+ALN+AYRE
Sbjct: 488 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRE 636
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 141 bits (355), Expect = 3.600e-36 Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
LHFDYL +G D DGY Y+LV++DD+S+F ++P +CT+ + A+ +L W LG PEV+VS+ A+ FK + + LG RF+VA S WSNG ERM E++RT + V+ ER R + +W D + AVQ+ALN+AYRE
Sbjct: 1264 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRE 1412
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.960e-32 Identity = 66/150 (44.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query: 1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFR-VVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
+HFDYL +G D ++G+ Y+LV++DD+S++V L+P +CT+ + A+ +L W +LG PEV+VS+ AS FK + + LG FSVA S WSNG ERM EV+RT + ++ ERGR +W D + AVQ+ALN+A+RE
Sbjct: 1366 VHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRT-RDWVDLVPAVQWALNTAFRE 1514
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: R7QLY9_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLY9_CHOCR) HSP 1 Score: 112 bits (279), Expect = 1.450e-26 Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNS 405
L FDY+ LG DG YVL++ DD S + P A ++ AA +I++W + LG P+ +S+G + + ET++LV L H F++ Y WSNGAVER+ E++RT R +SE EWPD + +Q LN+
Sbjct: 183 LQFDYIDLGTGSDGANYVLMMRDDFSDYKWFFPFADTSAANAATAIIDWCAALGVPKSLMSDGPTHLRNETIRLVAKGLKVPHHFTLPYCPWSNGAVERLGKELVRTCRATLSELQMRPEEWPDILPIIQSTLNN 317
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.550e-24 Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
LHFD+L +GDS Y+LVL DD++ F L + T++V ++L+W G PE ++S+ S FK +K V AKL H+F++ YS W NG +ER+N ++++ RV++ E EW + VQ LN
Sbjct: 1046 LHFDFLFMGDSFGPMKYILVLKDDLTHFCELIACEAPTADVVVTALLDWHKRFGIPETWISDQGSHFKNHVMKTVAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLN 1179
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A8K1FDA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDA4_PYTOL) HSP 1 Score: 106 bits (264), Expect = 6.330e-24 Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
LH+DYL LG+S + Y+LV+ DD + +V L P A TS V A +IL+W S G P +++S+ S FK + ++ V+ +L F++AYS W NG+VER+N +VI+ + E + +W + +Q LN
Sbjct: 775 LHWDYLYLGESFGDFEYLLVMKDDATHYVELVPCAKPTSTVTAEAILDWHSRFGVPRIWISDNGSHFKNDVMRQVSRRLNCHQEFTLAYSPWINGSVERVNKDVIQVLSAMCLEHKVDIRDWTYFVPVLQANLN 908
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 104 bits (260), Expect = 2.100e-23 Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSA 408
+H D+L +G Y+L+L DD+SS++ L P T+ AA ++ W+ V G E VS+ S FK +K +T +L H F+ AYS W+NG++ERM EV+R+ R ++SE +WP AVQ +N A
Sbjct: 359 VHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIERMCREVLRSCRALLSEWRLGAKDWPAVTEAVQSVINHA 494
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.110e-22 Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
LHFD+L LG+S G +Y+LVL D+ + F L P ++ TS V SIL W S G V++S+ S FK E + + +L A H F+V YS W NG+VER N ++++ RV+ E +W + +Q +LN
Sbjct: 205 LHFDFLTLGESFSGDSYLLVLKDEATHFTELVPCSAPTSTVVVESILAWYSRFGVAPVWISDQGSHFKAEIVGELCRRLKARHEFTVVYSPWINGSVERANRDIMQVLRVMCLEYKVDTHDWTFFVPMLQASLN 338
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6A3L5Z6_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L5Z6_9STRA) HSP 1 Score: 100 bits (248), Expect = 7.720e-22 Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
LH+D+L LG+S YVLV+ D+ + F L TSEVAA +IL+W S G P +VS+ S F ++ + + +L A +F++AY+ W NG++ER+N ++I+ + ++ E ++WP + VQ +LN
Sbjct: 240 LHWDFLTLGESFGSSQYVLVMKDEATHFAELVACDGPTSEVAAAAILDWHSRFGIPPTWVSDSGSHFTSKVIGELNRRLKAQQKFTLAYTPWKNGSIERVNRDIIQVLKALILELKVSAADWPYLLPLVQSSLN 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140516.2814.1 >prot_H-elongata_contig140516.2814.1 ID=prot_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVback to top mRNA from alignment at H-elongata_contig140516:1..420+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140516.2814.1 ID=mRNA_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig140516:1..420+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140516:1..420+ >mRNA_H-elongata_contig140516.2814.1 ID=mRNA_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig140516:1..420+ (Himanthalia elongata Himel1 dioecious)back to top |