mRNA_H-elongata_contig140516.2814.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140516.2814.1
Unique NamemRNA_H-elongata_contig140516.2814.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.460e-38
Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
            LHFDYL +G          D  DGY Y+LV++DD+S+F  ++P  +CT+ + A+ +L W   LG PEV+VS+ A+ FK   +  +   LG   RF+VA S WSNG  ERM  EV+RT + V+ ER R L +W D + AVQ+ALN+AYRE
Sbjct:   41 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRE 189          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 2.670e-36
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
            LHFDYL +G          D  DGY Y+LV++DD+S+F  ++P  +CT+ + A+ +L W   LG PEV+VS+ A+ FK   +  +   LG   RF+VA S WSNG  ERM  E++RT + V+ ER R + +W D + AVQ+ALN+AYRE
Sbjct:  488 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRE 636          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.600e-36
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query:    1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
            LHFDYL +G          D  DGY Y+LV++DD+S+F  ++P  +CT+ + A+ +L W   LG PEV+VS+ A+ FK   +  +   LG   RF+VA S WSNG  ERM  E++RT + V+ ER R + +W D + AVQ+ALN+AYRE
Sbjct: 1264 LHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRE 1412          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.960e-32
Identity = 66/150 (44.00%), Postives = 97/150 (64.67%), Query Frame = 1
Query:    1 LHFDYLKLG----------DSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFR-VVMSERGRPLSEWPDTIFAVQFALNSAYRE 417
            +HFDYL +G          D ++G+ Y+LV++DD+S++V L+P  +CT+ + A+ +L W  +LG PEV+VS+ AS FK   +  +   LG    FSVA S WSNG  ERM  EV+RT + ++  ERGR   +W D + AVQ+ALN+A+RE
Sbjct: 1366 VHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRT-RDWVDLVPAVQWALNTAFRE 1514          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: R7QLY9_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLY9_CHOCR)

HSP 1 Score: 112 bits (279), Expect = 1.450e-26
Identity = 54/135 (40.00%), Postives = 80/135 (59.26%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNS 405
            L FDY+ LG   DG  YVL++ DD S +    P A  ++  AA +I++W + LG P+  +S+G +  + ET++LV   L   H F++ Y  WSNGAVER+  E++RT R  +SE      EWPD +  +Q  LN+
Sbjct:  183 LQFDYIDLGTGSDGANYVLMMRDDFSDYKWFFPFADTSAANAATAIIDWCAALGVPKSLMSDGPTHLRNETIRLVAKGLKVPHHFTLPYCPWSNGAVERLGKELVRTCRATLSELQMRPEEWPDILPIIQSTLNN 317          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.550e-24
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
            LHFD+L +GDS     Y+LVL DD++ F  L    + T++V   ++L+W    G PE ++S+  S FK   +K V AKL   H+F++ YS W NG +ER+N ++++  RV++ E      EW   +  VQ  LN
Sbjct: 1046 LHFDFLFMGDSFGPMKYILVLKDDLTHFCELIACEAPTADVVVTALLDWHKRFGIPETWISDQGSHFKNHVMKTVAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLN 1179          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A8K1FDA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDA4_PYTOL)

HSP 1 Score: 106 bits (264), Expect = 6.330e-24
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
            LH+DYL LG+S   + Y+LV+ DD + +V L P A  TS V A +IL+W S  G P +++S+  S FK + ++ V+ +L     F++AYS W NG+VER+N +VI+    +  E    + +W   +  +Q  LN
Sbjct:  775 LHWDYLYLGESFGDFEYLLVMKDDATHYVELVPCAKPTSTVTAEAILDWHSRFGVPRIWISDNGSHFKNDVMRQVSRRLNCHQEFTLAYSPWINGSVERVNKDVIQVLSAMCLEHKVDIRDWTYFVPVLQANLN 908          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 104 bits (260), Expect = 2.100e-23
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSA 408
            +H D+L +G       Y+L+L DD+SS++ L P    T+  AA ++  W+ V G  E  VS+  S FK   +K +T +L   H F+ AYS W+NG++ERM  EV+R+ R ++SE      +WP    AVQ  +N A
Sbjct:  359 VHMDFLYMGQGLSNKKYLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHFTTAYSPWANGSIERMCREVLRSCRALLSEWRLGAKDWPAVTEAVQSVINHA 494          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.110e-22
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
            LHFD+L LG+S  G +Y+LVL D+ + F  L P ++ TS V   SIL W S  G   V++S+  S FK E +  +  +L A H F+V YS W NG+VER N ++++  RV+  E      +W   +  +Q +LN
Sbjct:  205 LHFDFLTLGESFSGDSYLLVLKDEATHFTELVPCSAPTSTVVVESILAWYSRFGVAPVWISDQGSHFKAEIVGELCRRLKARHEFTVVYSPWINGSVERANRDIMQVLRVMCLEYKVDTHDWTFFVPMLQASLN 338          
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Match: A0A6A3L5Z6_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L5Z6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.720e-22
Identity = 49/134 (36.57%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    1 LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWVSVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERMNLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALN 402
            LH+D+L LG+S     YVLV+ D+ + F  L      TSEVAA +IL+W S  G P  +VS+  S F ++ +  +  +L A  +F++AY+ W NG++ER+N ++I+  + ++ E     ++WP  +  VQ +LN
Sbjct:  240 LHWDFLTLGESFGSSQYVLVMKDEATHFAELVACDGPTSEVAAAAILDWHSRFGIPPTWVSDSGSHFTSKVIGELNRRLKAQQKFTLAYTPWKNGSIERVNRDIIQVLKALILELKVSAADWPYLLPLVQSSLN 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140516.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVS6_9PHAE4.460e-3846.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE2.670e-3644.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE3.600e-3644.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE3.960e-3244.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
R7QLY9_CHOCR1.450e-2640.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A485LNJ2_9STRA2.550e-2438.06Aste57867_23616 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1FDA4_PYTOL6.330e-2438.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R7Q542_CHOCR2.100e-2338.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A225UQG0_9STRA1.110e-2239.55Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3L5Z6_9STRA7.720e-2236.57Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140516contigH-elongata_contig140516:1..420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue9e-21
Seed eggNOG ortholog164328.Phyra85588
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.5464253-CDS-H-elongata_contig140516:0..4201622929835.5464253-CDS-H-elongata_contig140516:0..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140516 1..420 +
1691679176.91374-CDS-H-elongata_contig140516:0..4201691679176.91374-CDS-H-elongata_contig140516:0..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140516 1..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140516.2814.1prot_H-elongata_contig140516.2814.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140516 1..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140516.2814.1

>prot_H-elongata_contig140516.2814.1 ID=prot_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
LHFDYLKLGDSDDGYAYVLVLVDDVSSFVSLQPAASCTSEVAARSILEWV
SVLGTPEVFVSNGASQFKTETLKLVTAKLGASHRFSVAYSSWSNGAVERM
NLEVIRTFRVVMSERGRPLSEWPDTIFAVQFALNSAYRE*
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mRNA from alignment at H-elongata_contig140516:1..420+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140516.2814.1 ID=mRNA_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig140516:1..420+ (Himanthalia elongata Himel1 dioecious)
CTTCACTTCGACTATCTTAAATTGGGCGACAGTGACGATGGGTATGCGTA CGTGCTCGTACTTGTTGATGACGTGAGCTCGTTCGTGTCTTTGCAACCGG CGGCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTGGAGTGGGTG TCAGTATTGGGCACTCCCGAGGTGTTCGTGAGCAATGGAGCATCGCAATT CAAAACTGAGACGCTGAAGTTGGTTACTGCGAAACTGGGAGCCTCGCATC GTTTTTCGGTGGCATACTCATCGTGGAGCAATGGTGCTGTGGAGCGAATG AACTTGGAGGTGATTCGGACGTTTCGAGTGGTTATGAGTGAAAGGGGACG CCCGCTTTCGGAATGGCCCGACACCATCTTTGCGGTGCAGTTTGCGCTAA ACTCAGCCTACCGGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig140516:1..420+

>mRNA_H-elongata_contig140516.2814.1 ID=mRNA_H-elongata_contig140516.2814.1|Name=mRNA_H-elongata_contig140516.2814.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig140516:1..420+ (Himanthalia elongata Himel1 dioecious)
CTTCACTTCGACTATCTTAAATTGGGCGACAGTGACGATGGGTATGCGTA
CGTGCTCGTACTTGTTGATGACGTGAGCTCGTTCGTGTCTTTGCAACCGG
CGGCGTCTTGCACAAGTGAAGTTGCTGCAAGAAGTATTCTGGAGTGGGTG
TCAGTATTGGGCACTCCCGAGGTGTTCGTGAGCAATGGAGCATCGCAATT
CAAAACTGAGACGCTGAAGTTGGTTACTGCGAAACTGGGAGCCTCGCATC
GTTTTTCGGTGGCATACTCATCGTGGAGCAATGGTGCTGTGGAGCGAATG
AACTTGGAGGTGATTCGGACGTTTCGAGTGGTTATGAGTGAAAGGGGACG
CCCGCTTTCGGAATGGCCCGACACCATCTTTGCGGTGCAGTTTGCGCTAA
ACTCAGCCTACCGGGAGTAGCTTCACTTCGACTATCTTAAATTGGGCGAC
AGTGACGATGGGTATGCGTACGTGCTCGTACTTGTTGATGACGTGAGCTC
GTTCGTGTCTTTGCAACCGGCGGCGTCTTGCACAAGTGAAGTTGCTGCAA
GAAGTATTCTGGAGTGGGTGTCAGTATTGGGCACTCCCGAGGTGTTCGTG
AGCAATGGAGCATCGCAATTCAAAACTGAGACGCTGAAGTTGGTTACTGC
GAAACTGGGAGCCTCGCATCGTTTTTCGGTGGCATACTCATCGTGGAGCA
ATGGTGCTGTGGAGCGAATGAACTTGGAGGTGATTCGGACGTTTCGAGTG
GTTATGAGTGAAAGGGGACGCCCGCTTTCGGAATGGCCCGACACCATCTT
TGCGGTGCAGTTTGCGCTAAACTCAGCCTACCGGGAGTAG
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