mRNA_H-elongata_contig140466.2809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140466.2809.1
Unique NamemRNA_H-elongata_contig140466.2809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: D7G906_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G906_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.980e-29
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    4 SKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
            SK+EA+K VV DISGGCGSMYKIEVESPLFRGKGLVAQHR+VK AL  EIADMHG+TL TRP+P
Sbjct:   66 SKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 129          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A7S2CEL3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.430e-23
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
            +E T  +VED+SGGCGSMYKIEVESPLFRG  LV QHR+V D LKKEI +MHG+T++TR +P
Sbjct:   69 LEPTDVLVEDVSGGCGSMYKIEVESPLFRGVNLVKQHRMVTDTLKKEIGEMHGLTINTRRSP 130          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A836CI04_9STRA (Bola protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI04_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.040e-21
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    7 KVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
            +++ATK  VEDISGGCGSMY I +ESPLF+G  LV QH++VK  LKKEIA MHG+TL T+ +P
Sbjct:   51 ELKATKVTVEDISGGCGSMYSIAIESPLFKGLSLVKQHQLVKSTLKKEIAAMHGLTLQTKVSP 113          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A1V9Y5G4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5G4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.630e-20
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
            R ++ AT   V+DISGGCGSMYKIEV SP F GK +VAQHR+V   LK+EIA MHG+TL T
Sbjct:   27 RQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKT 87          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A7S2H125_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H125_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.680e-19
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
            + A+   V+DISGGCG+MYK+EVESP FRG  ++ QHR+V   LKKEI +MHG+TL TR TP
Sbjct:   50 LNASFVSVDDISGGCGAMYKLEVESPDFRGLNMLKQHRLVTQVLKKEIGEMHGLTLQTRVTP 111          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A067C2D2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2D2_SAPPC)

HSP 1 Score: 82.4 bits (202), Expect = 5.670e-19
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
            R  + AT   V+DISGGCGSMYKIEV SP F GK  VAQHR+V + LK+EI  MHG+TL T
Sbjct:   31 RQALSATHVKVDDISGGCGSMYKIEVASPTFEGKNRVAQHRLVNEVLKEEIGGMHGLTLKT 91          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A4D9DBR1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.540e-19
Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   19 TKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRP 189
            T  +++D+SGGCG+MY +EVES LFRGK LVAQHR+V   L KEI++MHG++L TRP
Sbjct:   67 THLLIQDVSGGCGAMYNMEVESELFRGKALVAQHRMVNQVLAKEISEMHGLSLKTRP 123          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A024TUJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUJ1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.080e-18
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
            ++AT   V+DISGGCGSMYKIEV SP F GK  VAQHR+V + +K+EI  MHG+T+ T
Sbjct:   34 LDATHVQVDDISGGCGSMYKIEVVSPAFEGKSRVAQHRLVNEVIKEEIGGMHGLTVKT 91          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A3R7BMA4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BMA4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-17
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
            ++AT   V+DISGGCGSMYKIEV S  F GK  VAQHR+V D +K+EI  MHG+T+ T
Sbjct:    9 LDATHVQVDDISGGCGSMYKIEVVSAAFEGKSRVAQHRLVNDVIKEEIGGMHGLTVKT 66          
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: UPI000A2A47BA (bolA-like protein 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A47BA)

HSP 1 Score: 78.6 bits (192), Expect = 2.200e-17
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    4 SKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
            SK++AT   V DISGGCG+MY+I VES +FRGK  V QHRIV +AL +E+  MHG+ +HT
Sbjct:   45 SKIDATVIRVRDISGGCGAMYEISVESEIFRGKRKVQQHRIVNEALSEEVKAMHGLRIHT 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G906_ECTSI1.980e-2982.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CEL3_9STRA2.430e-2369.35Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CI04_9STRA1.040e-2165.08Bola protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A1V9Y5G4_9STRA4.630e-2065.57Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2H125_9STRA3.680e-1961.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A067C2D2_SAPPC5.670e-1963.93Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A4D9DBR1_9STRA7.540e-1963.16Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024TUJ1_9STRA9.080e-1862.07Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7BMA4_9STRA2.000e-1762.07Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI000A2A47BA2.200e-1760.00bolA-like protein 3 n=1 Tax=Exaiptasia diaphana Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140466contigH-elongata_contig140466:1266..1466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.1e-22
Seed eggNOG ortholog2880.D7G906
Preferred nameBOLA3
KEGG koko:K22075
GOsGO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006355,GO:0006357,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0010467,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0097428,GO:0106035,GO:0140110,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG3348@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBolA protein
Ec32 orthologEc-15_002390.1
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929834.9997666-CDS-H-elongata_contig140466:1265..14661622929834.9997666-CDS-H-elongata_contig140466:1265..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140466 1266..1466 -
1691679176.8106883-CDS-H-elongata_contig140466:1265..14661691679176.8106883-CDS-H-elongata_contig140466:1265..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140466 1266..1466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140466.2809.1prot_H-elongata_contig140466.2809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140466 1266..1466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140466.2809.1

>prot_H-elongata_contig140466.2809.1 ID=prot_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKE
IADMHGVTLHTRPTPI*
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mRNA from alignment at H-elongata_contig140466:1266..1466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140466.2809.1 ID=mRNA_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig140466:1266..1466- (Himanthalia elongata Himel1 dioecious)
AGGTCCAAGGTAGAAGCAACAAAGACGGTTGTGGAGGATATTTCGGGGGG CTGTGGGAGCATGTACAAAATCGAGGTCGAGTCACCACTCTTTCGCGGGA AAGGCCTGGTGGCACAGCATCGGATAGTGAAGGACGCTCTTAAGAAAGAG ATCGCCGACATGCACGGTGTTACGCTCCACACGCGGCCGACTCCAATTTA G
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Coding sequence (CDS) from alignment at H-elongata_contig140466:1266..1466-

>mRNA_H-elongata_contig140466.2809.1 ID=mRNA_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig140466:1266..1466- (Himanthalia elongata Himel1 dioecious)
AGGTCCAAGGTAGAAGCAACAAAGACGGTTGTGGAGGATATTTCGGGGGG
CTGTGGGAGCATGTACAAAATCGAGGTCGAGTCACCACTCTTTCGCGGGA
AAGGCCTGGTGGCACAGCATCGGATAGTGAAGGACGCTCTTAAGAAAGAG
ATCGCCGACATGCACGGTGTTACGCTCCACACGCGGCCGACTCCAATTTA
GAGGTCCAAGGTAGAAGCAACAAAGACGGTTGTGGAGGATATTTCGGGGG
GCTGTGGGAGCATGTACAAAATCGAGGTCGAGTCACCACTCTTTCGCGGG
AAAGGCCTGGTGGCACAGCATCGGATAGTGAAGGACGCTCTTAAGAAAGA
GATCGCCGACATGCACGGTGTTACGCTCCACACGCGGCCGACTCCAATTT
AG
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