mRNA_H-elongata_contig140466.2809.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: D7G906_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G906_ECTSI) HSP 1 Score: 109 bits (273), Expect = 1.980e-29 Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1
Query: 4 SKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
SK+EA+K VV DISGGCGSMYKIEVESPLFRGKGLVAQHR+VK AL EIADMHG+TL TRP+P
Sbjct: 66 SKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPSP 129
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A7S2CEL3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL3_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.430e-23 Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 1
Query: 10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
+E T +VED+SGGCGSMYKIEVESPLFRG LV QHR+V D LKKEI +MHG+T++TR +P
Sbjct: 69 LEPTDVLVEDVSGGCGSMYKIEVESPLFRGVNLVKQHRMVTDTLKKEIGEMHGLTINTRRSP 130
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A836CI04_9STRA (Bola protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI04_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.040e-21 Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 7 KVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
+++ATK VEDISGGCGSMY I +ESPLF+G LV QH++VK LKKEIA MHG+TL T+ +P
Sbjct: 51 ELKATKVTVEDISGGCGSMYSIAIESPLFKGLSLVKQHQLVKSTLKKEIAAMHGLTLQTKVSP 113
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A1V9Y5G4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5G4_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.630e-20 Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 1 RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
R ++ AT V+DISGGCGSMYKIEV SP F GK +VAQHR+V LK+EIA MHG+TL T
Sbjct: 27 RQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKT 87
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A7S2H125_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H125_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.680e-19 Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRPTP 195
+ A+ V+DISGGCG+MYK+EVESP FRG ++ QHR+V LKKEI +MHG+TL TR TP
Sbjct: 50 LNASFVSVDDISGGCGAMYKLEVESPDFRGLNMLKQHRLVTQVLKKEIGEMHGLTLQTRVTP 111
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A067C2D2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2D2_SAPPC) HSP 1 Score: 82.4 bits (202), Expect = 5.670e-19 Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 1 RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
R + AT V+DISGGCGSMYKIEV SP F GK VAQHR+V + LK+EI MHG+TL T
Sbjct: 31 RQALSATHVKVDDISGGCGSMYKIEVASPTFEGKNRVAQHRLVNEVLKEEIGGMHGLTLKT 91
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A4D9DBR1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.540e-19 Identity = 36/57 (63.16%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 19 TKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHTRP 189
T +++D+SGGCG+MY +EVES LFRGK LVAQHR+V L KEI++MHG++L TRP
Sbjct: 67 THLLIQDVSGGCGAMYNMEVESELFRGKALVAQHRMVNQVLAKEISEMHGLSLKTRP 123
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A024TUJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUJ1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 9.080e-18 Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
++AT V+DISGGCGSMYKIEV SP F GK VAQHR+V + +K+EI MHG+T+ T
Sbjct: 34 LDATHVQVDDISGGCGSMYKIEVVSPAFEGKSRVAQHRLVNEVIKEEIGGMHGLTVKT 91
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: A0A3R7BMA4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BMA4_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.000e-17 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 10 VEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
++AT V+DISGGCGSMYKIEV S F GK VAQHR+V D +K+EI MHG+T+ T
Sbjct: 9 LDATHVQVDDISGGCGSMYKIEVVSAAFEGKSRVAQHRLVNDVIKEEIGGMHGLTVKT 66
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Match: UPI000A2A47BA (bolA-like protein 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A47BA) HSP 1 Score: 78.6 bits (192), Expect = 2.200e-17 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 4 SKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEIADMHGVTLHT 183
SK++AT V DISGGCG+MY+I VES +FRGK V QHRIV +AL +E+ MHG+ +HT
Sbjct: 45 SKIDATVIRVRDISGGCGAMYEISVESEIFRGKRKVQQHRIVNEALSEEVKAMHGLRIHT 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140466.2809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140466.2809.1 >prot_H-elongata_contig140466.2809.1 ID=prot_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp RSKVEATKTVVEDISGGCGSMYKIEVESPLFRGKGLVAQHRIVKDALKKEback to top mRNA from alignment at H-elongata_contig140466:1266..1466- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140466.2809.1 ID=mRNA_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig140466:1266..1466- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140466:1266..1466- >mRNA_H-elongata_contig140466.2809.1 ID=mRNA_H-elongata_contig140466.2809.1|Name=mRNA_H-elongata_contig140466.2809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig140466:1266..1466- (Himanthalia elongata Himel1 dioecious)back to top |