mRNA_H-elongata_contig140287.2798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140287.2798.1
Unique NamemRNA_H-elongata_contig140287.2798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 9.790e-21
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEADKLIVEQEVC 156
            + K+LYLGVYESELEAAKAHDRAARFHFPDKSMTNFATE+EAD++I EQE C
Sbjct:  161 ERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQEEC 212
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BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.820e-21
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    1 QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEADKLIVEQEVC 156
            + K+LYLGVYESELEAAKAHDRAARFHFPDKSMTNFATE+EAD++I EQE C
Sbjct:  148 ERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQEEC 199
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BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.950e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEADKLIV 141
            + K+LYLGVYESE++AAKAHDRAARFHF D ++ NF +E EAD+  V
Sbjct:  125 ERKQLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADRQAV 171
[Close]
BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: D8LM11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM11_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.820e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 KLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEADKLIV 141
            KLYLGVYESE++AAKAHDRAARFHF D ++ NF +E EAD+  V
Sbjct:   18 KLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADRQAV 61
[Close]
BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.830e-9
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 108
            + K+LYLGV+ESE++AAKAHDRAAR HF D++M NF
Sbjct:   19 ERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
[Close]
BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEAD 129
            + K+LYLGV+ESE++AAKAHDRAAR+HF  ++M NF   ++ +
Sbjct:   49 ERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNFLEPTDPE 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140287.2798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZ71_ECTSI9.790e-2184.62AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE9.820e-2184.62AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JUY3_9PHAE2.950e-1165.96AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D8LM11_ECTSI3.820e-1170.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH07_9STRA7.830e-969.44AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A836CI56_9STRA1.330e-755.81AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140287contigH-elongata_contig140287:1211..1387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.6471553-CDS-H-elongata_contig140287:1210..13871622929833.6471553-CDS-H-elongata_contig140287:1210..1387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140287 1211..1387 -
1691679176.3147619-CDS-H-elongata_contig140287:1210..13871691679176.3147619-CDS-H-elongata_contig140287:1210..1387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140287 1211..1387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140287.2798.1prot_H-elongata_contig140287.2798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140287 1211..1387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140287.2798.1

>prot_H-elongata_contig140287.2798.1 ID=prot_H-elongata_contig140287.2798.1|Name=mRNA_H-elongata_contig140287.2798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QSKKLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATESEADKLIVEQE
VCLMSSVS*
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mRNA from alignment at H-elongata_contig140287:1211..1387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140287.2798.1 ID=mRNA_H-elongata_contig140287.2798.1|Name=mRNA_H-elongata_contig140287.2798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig140287:1211..1387- (Himanthalia elongata Himel1 dioecious)
CAATCTAAAAAGTTGTATCTGGGCGTGTACGAGTCAGAGCTGGAGGCCGC
AAAGGCTCACGATCGCGCGGCCCGATTTCACTTTCCGGATAAATCCATGA
CCAACTTCGCTACCGAATCGGAGGCCGACAAGCTCATCGTCGAACAGGAG
GTGTGTTTGATGTCAAGTGTGTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig140287:1211..1387-

>mRNA_H-elongata_contig140287.2798.1 ID=mRNA_H-elongata_contig140287.2798.1|Name=mRNA_H-elongata_contig140287.2798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig140287:1211..1387- (Himanthalia elongata Himel1 dioecious)
CAATCTAAAAAGTTGTATCTGGGCGTGTACGAGTCAGAGCTGGAGGCCGC
AAAGGCTCACGATCGCGCGGCCCGATTTCACTTTCCGGATAAATCCATGA
CCAACTTCGCTACCGAATCGGAGGCCGACAAGCTCATCGTCGAACAGGAG
GTGTGTTTGATGTCAAGTGTGTCGTAGCAATCTAAAAAGTTGTATCTGGG
CGTGTACGAGTCAGAGCTGGAGGCCGCAAAGGCTCACGATCGCGCGGCCC
GATTTCACTTTCCGGATAAATCCATGACCAACTTCGCTACCGAATCGGAG
GCCGACAAGCTCATCGTCGAACAGGAGGTGTGTTTGATGTCAAGTGTGTC
GTAG
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