mRNA_H-elongata_contig140203.2796.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.540e-20 Identity = 38/57 (66.67%), Postives = 51/57 (89.47%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
+LSIGDIAVVARLNWL DGT EG+P+T+++E+PLL +LV R+M+EP+IVAYM+ P+
Sbjct: 99 KLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGRPK 155
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.360e-19 Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
+LSIGDIAVVARLNWL DGT EG+P+T++DE PL+ +LV RVM+EP+IVAYM+ P+
Sbjct: 149 KLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPK 205
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 3.240e-17 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAP 168
+LSIGDI VVARLNWLK G L+GIP TIVD++PLL ALV VMSE KIV Y+++ P
Sbjct: 150 KLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLESGP 205
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 4.740e-17 Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTL-EGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
+LSIGDIAVVARLNWL DGT E +P+ I++E+PLL +LV RVM+EP+IVAYM+ P+
Sbjct: 149 KLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPK 206
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.030e-16 Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPRST 177
+LSIGDIAVVARL WLK+G+L+GIPT+IVDEYPLL AL+ RV +EP I Y + +T
Sbjct: 152 KLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQERSETT 210
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D7FHE9_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE9_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 9.310e-9 Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
Q+++ D+ + RL+ +K+G L+GIPTTI D P L AL V+SEPK+ A++
Sbjct: 57 QMTVADMMIAYRLHHMKNGVLDGIPTTIADSCPSLCALYDAVVSEPKVAAFL 108
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.570e-8 Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
++++ DI + RL+ +++G L+GIPTTI D YP L A+ V+SEPK+ A++
Sbjct: 149 KMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFL 200
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A2E1MVP6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MVP6_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 9.550e-7 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query: 1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
L+I D+A+ L WLK G L+G+PTTI+DEY L L + PK++ +M
Sbjct: 159 NLTIADLAIWRLLGWLKSGMLDGVPTTILDEYENLNKLREEIYKNPKVIKWM 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140203.2796.1 >prot_H-elongata_contig140203.2796.1 ID=prot_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAback to top mRNA from alignment at H-elongata_contig140203:211..402+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140203.2796.1 ID=mRNA_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig140203:211..402+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140203:211..402+ >mRNA_H-elongata_contig140203.2796.1 ID=mRNA_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig140203:211..402+ (Himanthalia elongata Himel1 dioecious)back to top |