mRNA_H-elongata_contig140203.2796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140203.2796.1
Unique NamemRNA_H-elongata_contig140203.2796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.540e-20
Identity = 38/57 (66.67%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
            +LSIGDIAVVARLNWL DGT EG+P+T+++E+PLL +LV R+M+EP+IVAYM+  P+
Sbjct:   99 KLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGRPK 155          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.360e-19
Identity = 39/57 (68.42%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
            +LSIGDIAVVARLNWL DGT EG+P+T++DE PL+ +LV RVM+EP+IVAYM+  P+
Sbjct:  149 KLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPK 205          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.240e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAP 168
            +LSIGDI VVARLNWLK G L+GIP TIVD++PLL ALV  VMSE KIV Y+++ P
Sbjct:  150 KLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLESGP 205          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.740e-17
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTL-EGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPR 171
            +LSIGDIAVVARLNWL DGT  E +P+ I++E+PLL +LV RVM+EP+IVAYM+  P+
Sbjct:  149 KLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPK 206          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.030e-16
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYMKNAPRST 177
            +LSIGDIAVVARL WLK+G+L+GIPT+IVDEYPLL AL+ RV +EP I  Y +    +T
Sbjct:  152 KLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQERSETT 210          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: D7FHE9_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 9.310e-9
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
            Q+++ D+ +  RL+ +K+G L+GIPTTI D  P L AL   V+SEPK+ A++
Sbjct:   57 QMTVADMMIAYRLHHMKNGVLDGIPTTIADSCPSLCALYDAVVSEPKVAAFL 108          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-8
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
            ++++ DI +  RL+ +++G L+GIPTTI D YP L A+   V+SEPK+ A++
Sbjct:  149 KMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFL 200          
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Match: A0A2E1MVP6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MVP6_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 9.550e-7
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVAYM 156
             L+I D+A+   L WLK G L+G+PTTI+DEY  L  L   +   PK++ +M
Sbjct:  159 NLTIADLAIWRLLGWLKSGMLDGVPTTILDEYENLNKLREEIYKNPKVIKWM 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140203.2796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JAZ7_9PHAE1.540e-2066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHF0_ECTSI1.360e-1968.42Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E6_9PHAE3.240e-1769.64Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
D8LK37_ECTSI4.740e-1765.52Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E7_9PHAE1.030e-1664.41Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
D7FHE9_ECTSI9.310e-946.15Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A6H5KRV2_9PHAE1.570e-844.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E1MVP6_9BACT9.550e-744.23Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140203contigH-elongata_contig140203:211..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.551313-CDS-H-elongata_contig140203:210..4021622929833.551313-CDS-H-elongata_contig140203:210..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140203 211..402 +
1691679176.2948928-CDS-H-elongata_contig140203:210..4021691679176.2948928-CDS-H-elongata_contig140203:210..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140203 211..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140203.2796.1prot_H-elongata_contig140203.2796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140203 211..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140203.2796.1

>prot_H-elongata_contig140203.2796.1 ID=prot_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
QLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVGRVMSEPKIVA
YMKNAPRSTMQRL*
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mRNA from alignment at H-elongata_contig140203:211..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140203.2796.1 ID=mRNA_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig140203:211..402+ (Himanthalia elongata Himel1 dioecious)
CAGCTTTCTATCGGGGACATTGCCGTGGTAGCCCGTTTGAACTGGCTCAA GGACGGCACACTCGAGGGCATCCCTACAACGATTGTTGACGAATACCCCC TGCTCTTAGCGCTAGTTGGCCGCGTGATGTCGGAGCCCAAGATCGTGGCC TACATGAAGAACGCTCCCAGATCCACGATGCAGCGACTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig140203:211..402+

>mRNA_H-elongata_contig140203.2796.1 ID=mRNA_H-elongata_contig140203.2796.1|Name=mRNA_H-elongata_contig140203.2796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig140203:211..402+ (Himanthalia elongata Himel1 dioecious)
CAGCTTTCTATCGGGGACATTGCCGTGGTAGCCCGTTTGAACTGGCTCAA
GGACGGCACACTCGAGGGCATCCCTACAACGATTGTTGACGAATACCCCC
TGCTCTTAGCGCTAGTTGGCCGCGTGATGTCGGAGCCCAAGATCGTGGCC
TACATGAAGAACGCTCCCAGATCCACGATGCAGCGACTTTGACAGCTTTC
TATCGGGGACATTGCCGTGGTAGCCCGTTTGAACTGGCTCAAGGACGGCA
CACTCGAGGGCATCCCTACAACGATTGTTGACGAATACCCCCTGCTCTTA
GCGCTAGTTGGCCGCGTGATGTCGGAGCCCAAGATCGTGGCCTACATGAA
GAACGCTCCCAGATCCACGATGCAGCGACTTTGA
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