mRNA_H-elongata_contig140179.2795.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 166 bits (419), Expect = 4.340e-47 Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 1
Query: 1 RVQEARLKEAEARVKEIEERGAIKAREEAKARGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPEV 345
R QEARL+ A AR +EIE RGA KAR+EAKARGLALPEDFNDGPP+ D++LS LPY LPLMDSLV+G HIF T+P QL LEPLVA+L IYRSLP SGLILFFGLQ+FA+KPEV
Sbjct: 221 RAQEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEV 335
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD) HSP 1 Score: 64.7 bits (156), Expect = 3.160e-10 Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 94 RGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLK-ILEPLVAVLFIYRSLPLSGLILFFGLQYFASK 336
R + + +N G P G DR S LPYFLPL+DSL YG+++F +P + +L PL IYR +P L +FFG+ + +
Sbjct: 39 RSVKVSMSYNSGKPEGKDRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVR 120
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A6M0C2W3_9CYAN (Uncharacterized protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C2W3_9CYAN) HSP 1 Score: 58.9 bits (141), Expect = 2.250e-8 Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 127 GPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
G + DR + LPY LPL++ LV+G+++F +P+ IL PL VL ++ ++P + LI+FFGL + + E
Sbjct: 5 GSTTPSDRFFACLPYLLPLVEGLVFGSYLFREFPDLRIILLPLTPVLQLFAAIPFAELIIFFGLYFLVVRNE 76
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A6P0QFZ3_9CYAN (Uncharacterized protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QFZ3_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 8.830e-8 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
DR+ + LPY LPL+ +L +G+ +F +P +L PL VLFIY+S+P +G+I+FF L + E
Sbjct: 11 DRIFACLPYLLPLVSALPFGSFLFQQFPALGVLLIPLQPVLFIYQSIPFAGIIIFFLLFLLVVRNE 76
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A3C0N9I1_9CYAN (Uncharacterized protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0N9I1_9CYAN) HSP 1 Score: 56.2 bits (134), Expect = 2.420e-7 Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query: 127 GPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
G + DRV +ALPY LP++ L +G+ +F +P L PL VLFIY +P +GL++FF L + E
Sbjct: 5 GSTTAKDRVFAALPYLLPIISGLPFGSFLFRQFPALSVFLLPLQPVLFIYNQIPFAGLVVFFLLFLLVVRNE 76
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: UPI001446CD18 (hypothetical protein n=1 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI001446CD18) HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7 Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
DR+L+ LPY LPL++ L++G+ +F+ +P + PL + IYRS+P +GLI+FF L + E
Sbjct: 11 DRILACLPYLLPLIEGLMFGSILFNQFPVLKLLFLPLFPLQQIYRSIPYAGLIIFFALWLLVVRNE 76
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S3Q1P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1P5_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7 Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 118 FNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLF-IYRSLPLSGLILFFGLQYFASKPEV 345
ND P+ GD+V+S LPY PLMD L YG + + VA+L+ +YRS+P SG I FF L + P +
Sbjct: 205 LNDNKPTTGDKVISLLPYLFPLMDGLQYGRFLLVGEGAESNPFVVAVAILYALYRSVPFSGFIAFFVLNFLGGNPGI 281
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S3Q1B9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1B9_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7 Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 118 FNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQL----KILEPLVAVLF-IYRSLPLSGLILFFGLQYFASK 336
ND PP+G DR +S LPY LPLMD L YG + I + A+L+ +YRS+P SGLI FF LQ+
Sbjct: 207 LNDKPPTGRDRYISLLPYLLPLMDGLQYGRFLLGGADGSADAGGNIFVAITAILYSLYRSVPFSGLIAFFVLQFLGGN 284
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A383VS91_TETOB (Protein TIC 20 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VS91_TETOB) HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7 Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 64 AIKAREEAKARGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPEVW 348
A K + A+ +A G P +RVL+A+PY LPL+DS YG +F YP + PL +L +Y S+P + L+ FF + + + W
Sbjct: 53 AAKQQPRARCVAVAARSSRGGGSPDIQERVLAAVPYLLPLLDSFGYGRFLFYQYPIIRSFISPLAPLLGVYSSVPFAPLLCFFAVYLGIVQNQQW 147
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A1Z4NGH8_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NGH8_9CYAN) HSP 1 Score: 55.5 bits (132), Expect = 4.750e-7 Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1
Query: 145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
DR+ + LPY LPL+D LV+GT + +P I PL ++ IY S+P L++FF L + + E
Sbjct: 11 DRIFACLPYTLPLVDVLVFGTFLIQQFPALSVIFVPLAPIIAIYGSIPFGSLVVFFALFFLVVRNE 76 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140179.2795.1 >prot_H-elongata_contig140179.2795.1 ID=prot_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp RVQEARLKEAEARVKEIEERGAIKAREEAKARGLALPEDFNDGPPSGGDRback to top mRNA from alignment at H-elongata_contig140179:258..1133- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140179.2795.1 ID=mRNA_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig140179:258..1133- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140179:258..1133- >mRNA_H-elongata_contig140179.2795.1 ID=mRNA_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig140179:258..1133- (Himanthalia elongata Himel1 dioecious)back to top |