mRNA_H-elongata_contig140179.2795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140179.2795.1
Unique NamemRNA_H-elongata_contig140179.2795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.340e-47
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 RVQEARLKEAEARVKEIEERGAIKAREEAKARGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPEV 345
            R QEARL+ A AR +EIE RGA KAR+EAKARGLALPEDFNDGPP+  D++LS LPY LPLMDSLV+G HIF T+P QL  LEPLVA+L IYRSLP SGLILFFGLQ+FA+KPEV
Sbjct:  221 RAQEARLEAAAAREREIENRGADKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEV 335          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 64.7 bits (156), Expect = 3.160e-10
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   94 RGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLK-ILEPLVAVLFIYRSLPLSGLILFFGLQYFASK 336
            R + +   +N G P G DR  S LPYFLPL+DSL YG+++F  +P   + +L PL     IYR +P   L +FFG+ +   +
Sbjct:   39 RSVKVSMSYNSGKPEGKDRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVR 120          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A6M0C2W3_9CYAN (Uncharacterized protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C2W3_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.250e-8
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  127 GPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
            G  +  DR  + LPY LPL++ LV+G+++F  +P+   IL PL  VL ++ ++P + LI+FFGL +   + E
Sbjct:    5 GSTTPSDRFFACLPYLLPLVEGLVFGSYLFREFPDLRIILLPLTPVLQLFAAIPFAELIIFFGLYFLVVRNE 76          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A6P0QFZ3_9CYAN (Uncharacterized protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=A0A6P0QFZ3_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 8.830e-8
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
            DR+ + LPY LPL+ +L +G+ +F  +P    +L PL  VLFIY+S+P +G+I+FF L     + E
Sbjct:   11 DRIFACLPYLLPLVSALPFGSFLFQQFPALGVLLIPLQPVLFIYQSIPFAGIIIFFLLFLLVVRNE 76          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A3C0N9I1_9CYAN (Uncharacterized protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0N9I1_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-7
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1
Query:  127 GPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
            G  +  DRV +ALPY LP++  L +G+ +F  +P     L PL  VLFIY  +P +GL++FF L     + E
Sbjct:    5 GSTTAKDRVFAALPYLLPIISGLPFGSFLFRQFPALSVFLLPLQPVLFIYNQIPFAGLVVFFLLFLLVVRNE 76          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: UPI001446CD18 (hypothetical protein n=1 Tax=unclassified Anabaena TaxID=2619674 RepID=UPI001446CD18)

HSP 1 Score: 56.2 bits (134), Expect = 2.590e-7
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
            DR+L+ LPY LPL++ L++G+ +F+ +P    +  PL  +  IYRS+P +GLI+FF L     + E
Sbjct:   11 DRILACLPYLLPLIEGLMFGSILFNQFPVLKLLFLPLFPLQQIYRSIPYAGLIIFFALWLLVVRNE 76          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S3Q1P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1P5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  118 FNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLF-IYRSLPLSGLILFFGLQYFASKPEV 345
             ND  P+ GD+V+S LPY  PLMD L YG  +      +       VA+L+ +YRS+P SG I FF L +    P +
Sbjct:  205 LNDNKPTTGDKVISLLPYLFPLMDGLQYGRFLLVGEGAESNPFVVAVAILYALYRSVPFSGFIAFFVLNFLGGNPGI 281          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A7S3Q1B9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1B9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  118 FNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQL----KILEPLVAVLF-IYRSLPLSGLILFFGLQYFASK 336
             ND PP+G DR +S LPY LPLMD L YG  +             I   + A+L+ +YRS+P SGLI FF LQ+    
Sbjct:  207 LNDKPPTGRDRYISLLPYLLPLMDGLQYGRFLLGGADGSADAGGNIFVAITAILYSLYRSVPFSGLIAFFVLQFLGGN 284          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A383VS91_TETOB (Protein TIC 20 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VS91_TETOB)

HSP 1 Score: 57.0 bits (136), Expect = 3.100e-7
Identity = 32/95 (33.68%), Postives = 49/95 (51.58%), Query Frame = 1
Query:   64 AIKAREEAKARGLALPEDFNDGPPSGGDRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPEVW 348
            A K +  A+   +A       G P   +RVL+A+PY LPL+DS  YG  +F  YP     + PL  +L +Y S+P + L+ FF +     + + W
Sbjct:   53 AAKQQPRARCVAVAARSSRGGGSPDIQERVLAAVPYLLPLLDSFGYGRFLFYQYPIIRSFISPLAPLLGVYSSVPFAPLLCFFAVYLGIVQNQQW 147          
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Match: A0A1Z4NGH8_9CYAN (Uncharacterized protein n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NGH8_9CYAN)

HSP 1 Score: 55.5 bits (132), Expect = 4.750e-7
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  145 DRVLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGLILFFGLQYFASKPE 342
            DR+ + LPY LPL+D LV+GT +   +P    I  PL  ++ IY S+P   L++FF L +   + E
Sbjct:   11 DRIFACLPYTLPLVDVLVFGTFLIQQFPALSVIFVPLAPIIAIYGSIPFGSLVVFFALFFLVVRNE 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140179.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTM8_ECTSI4.340e-4775.65TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A7S2ZG79_9RHOD3.160e-1040.24Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A6M0C2W3_9CYAN2.250e-838.89Uncharacterized protein n=1 Tax=Okeania sp. SIO2H7... [more]
A0A6P0QFZ3_9CYAN8.830e-842.42Uncharacterized protein n=2 Tax=unclassified Micro... [more]
A0A3C0N9I1_9CYAN2.420e-740.28Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
UPI001446CD182.590e-740.91hypothetical protein n=1 Tax=unclassified Anabaena... [more]
A0A7S3Q1P5_9STRA2.980e-740.26Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3Q1B9_9STRA2.980e-743.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A383VS91_TETOB3.100e-733.68Protein TIC 20 n=2 Tax=Scenedesmaceae TaxID=3086 R... [more]
A0A1Z4NGH8_9CYAN4.750e-739.39Uncharacterized protein n=1 Tax=Calothrix sp. NIES... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140179contigH-elongata_contig140179:258..1133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue7.7e-40
Seed eggNOG ortholog2880.D8LTM8
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.protein transport
EggNOG OGs2BYWW@1,2QUSD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTIC 20 related, plastid import
Ec32 orthologEc-28_003500.1
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.4695206-CDS-H-elongata_contig140179:257..3951622929833.4695206-CDS-H-elongata_contig140179:257..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140179 258..395 -
1691679176.2744176-CDS-H-elongata_contig140179:257..3951691679176.2744176-CDS-H-elongata_contig140179:257..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140179 258..395 -
1622929833.5057466-CDS-H-elongata_contig140179:899..11331622929833.5057466-CDS-H-elongata_contig140179:899..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140179 900..1133 -
1691679176.2860677-CDS-H-elongata_contig140179:899..11331691679176.2860677-CDS-H-elongata_contig140179:899..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140179 900..1133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140179.2795.1prot_H-elongata_contig140179.2795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140179 258..1133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140179.2795.1

>prot_H-elongata_contig140179.2795.1 ID=prot_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
RVQEARLKEAEARVKEIEERGAIKAREEAKARGLALPEDFNDGPPSGGDR
VLSALPYFLPLMDSLVYGTHIFSTYPEQLKILEPLVAVLFIYRSLPLSGL
ILFFGLQYFASKPEVWWYGGILQ*
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mRNA from alignment at H-elongata_contig140179:258..1133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140179.2795.1 ID=mRNA_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=876bp|location=Sequence derived from alignment at H-elongata_contig140179:258..1133- (Himanthalia elongata Himel1 dioecious)
CGTGTGCAGGAGGCGCGGTTAAAAGAGGCGGAGGCGAGAGTAAAAGAAAT TGAAGAGCGCGGCGCCATAAAAGCCAGGGAAGAGGCCAAGGCCAGGGGAC TCGCGCTACCGGAAGATTTCAACGACGGCCCGCCCTCGGGAGGCGACAGG GTGCTCTCCGCCCTGCCCTACTTCCTGCCCCTCATGGACAGCCTCGTGTA CGGGACGCATATATTCTCGACGTATCCTGAGCAGGTCTGATCGGGTTGGT TGCCTGGAAGGCTTTATTCATTGCGGAGCCGAGGGGAGAGAGGATAAAAA ATGTCGAATCCCCGCGTGTTTTGTTTTTAATCCCTCGCTTAAAAAGTGCT GGTGAGAGTCGAGCTCTTCTAACGGACGAGAGGCGCGTCGACGAGGCCAA TAACCGATGACTGTAACTGACCTCCCCTCTTGCACTCTCGAGAGCAAGCA ATCGATGCATTCCGACGAGCTCCACGTACAGCTCGCCGTGTTTTCATCCA GCAGAGGGGCTAAAGCCCCTGTGTTTTGCCGCCGATACTACTGTGGACTC TAATAACACATACTGTATACTATATAGAGAGAAATAGCTAAATATTAGTA ACAAGTACCGGCACATTTTATCTGTTTATTTCACCTTGACCAATCATATC CTAGAGCCTAATAAGCGTGCCTCGTATCCCCCTCCCCCTCTTCGCGTTAT CCCCCCCTTCCTTAACCCTTCCTTCCTTCCTTACCCAGCTCAAGATCCTG GAGCCGCTGGTGGCCGTTCTGTTCATCTACCGCTCCCTGCCTCTTAGCGG CTTGATCTTGTTCTTCGGGCTGCAGTATTTTGCCAGCAAGCCAGAGGTAT GGTGGTATGGCGGTATACTGCAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig140179:258..1133-

>mRNA_H-elongata_contig140179.2795.1 ID=mRNA_H-elongata_contig140179.2795.1|Name=mRNA_H-elongata_contig140179.2795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig140179:258..1133- (Himanthalia elongata Himel1 dioecious)
CGTGTGCAGGAGGCGCGGTTAAAAGAGGCGGAGGCGAGAGTAAAAGAAAT
TGAAGAGCGCGGCGCCATAAAAGCCAGGGAAGAGGCCAAGGCCAGGGGAC
TCGCGCTACCGGAAGATTTCAACGACGGCCCGCCCTCGGGAGGCGACAGG
GTGCTCTCCGCCCTGCCCTACTTCCTGCCCCTCATGGACAGCCTCGTGTA
CGGGACGCATATATTCTCGACGTATCCTGAGCAGCGTGTGCAGGAGGCGC
GGTTAAAAGAGGCGGAGGCGAGAGTAAAAGAAATTGAAGAGCGCGGCGCC
ATAAAAGCCAGGGAAGAGGCCAAGGCCAGGGGACTCGCGCTACCGGAAGA
TTTCAACGACGGCCCGCCCTCGGGAGGCGACAGGGTGCTCTCCGCCCTGC
CCTACTTCCTGCCCCTCATGGACAGCCTCGTGTACGGGACGCATATATTC
TCGACGTATCCTGAGCAGCTCAAGATCCTGGAGCCGCTGGTGGCCGTTCT
GTTCATCTACCGCTCCCTGCCTCTTAGCGGCTTGATCTTGTTCTTCGGGC
TGCAGTATTTTGCCAGCAAGCCAGAGGTATGGTGGTATGGCGGTATACTG
CAGTAGCTCAAGATCCTGGAGCCGCTGGTGGCCGTTCTGTTCATCTACCG
CTCCCTGCCTCTTAGCGGCTTGATCTTGTTCTTCGGGCTGCAGTATTTTG
CCAGCAAGCCAGAGGTATGGTGGTATGGCGGTATACTGCAGTAG
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