mRNA_H-elongata_contig140082.2791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140082.2791.1
Unique NamemRNA_H-elongata_contig140082.2791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140082.2791.1 vs. uniprot
Match: D7FS86_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS86_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.730e-10
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   10 AEKEVSTMKTAK-AKRVVDIDELDRQMAAVEKAAGIKARFEEIQGHVKVT 156
            AEKEV  MK    ++R  DIDELDRQM+A+EKAAGIKAR++E+QGHVK +
Sbjct:  269 AEKEVVAMKAGGGSRRFTDIDELDRQMSAIEKAAGIKARYDELQGHVKAS 318
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140082.2791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS86_ECTSI3.730e-1066.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140082contigH-elongata_contig140082:1406..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.0367253-UTR-H-elongata_contig140082:1405..14351622929833.0367253-UTR-H-elongata_contig140082:1405..1435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140082 1406..1435 +
1691679176.057855-UTR-H-elongata_contig140082:1405..14351691679176.057855-UTR-H-elongata_contig140082:1405..1435Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig140082 1406..1435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929833.0553453-CDS-H-elongata_contig140082:1435..15671622929833.0553453-CDS-H-elongata_contig140082:1435..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140082 1436..1567 +
1691679176.0745852-CDS-H-elongata_contig140082:1435..15671691679176.0745852-CDS-H-elongata_contig140082:1435..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140082 1436..1567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140082.2791.1prot_H-elongata_contig140082.2791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140082 1436..1567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140082.2791.1

>prot_H-elongata_contig140082.2791.1 ID=prot_H-elongata_contig140082.2791.1|Name=mRNA_H-elongata_contig140082.2791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MKTAKAKRVVDIDELDRQMAAVEKAAGIKARFEEIQGHVKVTNA
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mRNA from alignment at H-elongata_contig140082:1406..1567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140082.2791.1 ID=mRNA_H-elongata_contig140082.2791.1|Name=mRNA_H-elongata_contig140082.2791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig140082:1406..1567+ (Himanthalia elongata Himel1 dioecious)
AGATTCGAAGCGGAGAAGGAAGTGTCAACGATGAAGACGGCGAAGGCAAA
GCGCGTCGTCGACATCGACGAGCTCGACCGCCAGATGGCTGCGGTGGAAA
AAGCGGCCGGAATCAAGGCACGCTTCGAGGAGATTCAAGGCCACGTTAAG
GTAACTAACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig140082:1406..1567+

>mRNA_H-elongata_contig140082.2791.1 ID=mRNA_H-elongata_contig140082.2791.1|Name=mRNA_H-elongata_contig140082.2791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig140082:1406..1567+ (Himanthalia elongata Himel1 dioecious)
ATGAAGACGGCGAAGGCAAAGCGCGTCGTCGACATCGACGAGCTCGACCG
CCAGATGGCTGCGGTGGAAAAAGCGGCCGGAATCAAGGCACGCTTCGAGG
AGATTCAAGGCCACGTTAAGGTAACTAACGCCATGAAGACGGCGAAGGCA
AAGCGCGTCGTCGACATCGACGAGCTCGACCGCCAGATGGCTGCGGTGGA
AAAAGCGGCCGGAATCAAGGCACGCTTCGAGGAGATTCAAGGCCACGTTA
AGGTAACTAACGCC
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